RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 BBS4Q96RK4 519 aa27.68■■■□□ 2.02
LIMCH1-211ENST00000509638 ELAC2Q9BQ52 826 aaKnown RBP27.68■■■□□ 2.02
LIMCH1-211ENST00000509638 TUBB6Q9BUF5 446 aa27.68■■■□□ 2.02
LIMCH1-211ENST00000509638 TRIM33Q9UPN9 1127 aa27.68■■■□□ 2.02
LIMCH1-211ENST00000509638 MAPRE3Q9UPY8 281 aa27.68■■■□□ 2.02
LIMCH1-211ENST00000509638 ATMQ13315 3056 aa27.67■■■□□ 2.02
LIMCH1-211ENST00000509638 ARGFXA6NJG6 315 aa27.67■■■□□ 2.02
LIMCH1-211ENST00000509638 C17orf105B2RV13 164 aa27.67■■■□□ 2.02
LIMCH1-211ENST00000509638 PDPK1O15530 556 aa27.67■■■□□ 2.02
LIMCH1-211ENST00000509638 SHOX2O60902 331 aaPredicted RBP27.67■■■□□ 2.02
LIMCH1-211ENST00000509638 NTSP30990 170 aa27.67■■■□□ 2.02
LIMCH1-211ENST00000509638 PTGER1P34995 402 aa27.67■■■□□ 2.02
LIMCH1-211ENST00000509638 STX1BP61266 288 aa27.67■■■□□ 2.02
LIMCH1-211ENST00000509638 ST3GAL2Q16842 350 aa27.67■■■□□ 2.02
LIMCH1-211ENST00000509638 DCAF10Q5QP82 559 aa27.67■■■□□ 2.02
LIMCH1-211ENST00000509638 DGAT2L6Q6ZPD8 337 aa27.67■■■□□ 2.02
LIMCH1-211ENST00000509638 CRELD1Q96HD1 420 aa27.67■■■□□ 2.02
LIMCH1-211ENST00000509638 COPG1Q9Y678 874 aaKnown RBP27.67■■■□□ 2.02
LIMCH1-211ENST00000509638 CLCA3PQ9Y6N3 262 aa27.67■■■□□ 2.02
LIMCH1-211ENST00000509638 C9JVG2 144 aa27.66■■■□□ 2.02
LIMCH1-211ENST00000509638 ATP1B1P05026 303 aa27.66■■■□□ 2.02
LIMCH1-211ENST00000509638 PCSK2P16519 638 aa27.66■■■□□ 2.02
LIMCH1-211ENST00000509638 DDX5P17844 614 aaKnown RBP27.66■■■□□ 2.02
LIMCH1-211ENST00000509638 TNNI3P19429 210 aa27.66■■■□□ 2.02
LIMCH1-211ENST00000509638 CLNS1AP54105 237 aaKnown RBP27.66■■■□□ 2.02
LIMCH1-211ENST00000509638 CEBPEQ15744 281 aa27.66■■■□□ 2.02
LIMCH1-211ENST00000509638 MPEG1Q2M385 716 aa27.66■■■□□ 2.02
LIMCH1-211ENST00000509638 CPTPQ5TA50 214 aa27.66■■■□□ 2.02
LIMCH1-211ENST00000509638 MIER2Q8N344 545 aa27.66■■■□□ 2.02
LIMCH1-211ENST00000509638 AMER2Q8N7J2 671 aa27.66■■■□□ 2.02
LIMCH1-211ENST00000509638 OR14A16Q8NHC5 309 aa27.66■■■□□ 2.02
LIMCH1-211ENST00000509638 PTPMT1Q8WUK0 201 aaPredicted RBP27.66■■■□□ 2.02
LIMCH1-211ENST00000509638 SNRNP27Q8WVK2 155 aaKnown RBP27.66■■■□□ 2.02
LIMCH1-211ENST00000509638 FER1L6-AS2Q96M78 137 aa27.66■■■□□ 2.02
LIMCH1-211ENST00000509638 PRPF18Q99633 342 aaKnown RBP27.66■■■□□ 2.02
LIMCH1-211ENST00000509638 CLMPQ9H6B4 373 aa27.66■■■□□ 2.02
LIMCH1-211ENST00000509638 SLAMF7Q9NQ25 335 aa27.66■■■□□ 2.02
LIMCH1-211ENST00000509638 ATAD3AQ9NVI7 634 aa27.66■■■□□ 2.02
LIMCH1-211ENST00000509638 LAMP1P11279 417 aa27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 NCF2P19878 526 aaPredicted RBP27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 PGDP52209 483 aa27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 CHAF1BQ13112 559 aa27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 SUN3Q8TAQ9 357 aa27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 DAZLQ92904 295 aaKnown RBP27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 RIT1Q92963 219 aa27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 TESCQ96BS2 214 aa27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 IMMP1LQ96LU5 166 aa27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 EPN3Q9H201 632 aa27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 ZIM2Q9NZV7 527 aa27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 CACNA1GO43497 2377 aa27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 DOCK10Q96BY6 2186 aa27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 MYO1GB0I1T2 1018 aa27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 NT5EP21589 574 aa27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 NCBP2P52298 156 aaKnown RBP eCLIP27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 RRADP55042 308 aa27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 SLC26A5P58743 744 aa27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 LTB4RQ15722 352 aa27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 PGS1Q32NB8 556 aa27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 CAMKMTQ7Z624 323 aa27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 GALNT12Q8IXK2 581 aa27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 CCDC116Q8IYX3 515 aa27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 TMEM102Q8N9M5 508 aaPredicted RBP27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 CLEC1AQ8NC01 280 aa27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 OR9I1Q8NGQ6 314 aa27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 DOK4Q8TEW6 326 aa27.65■■■□□ 2.02
LIMCH1-211ENST00000509638 IL12AP29459 219 aa27.64■■■□□ 2.01
LIMCH1-211ENST00000509638 MRPL19P49406 292 aaKnown RBP27.64■■■□□ 2.01
LIMCH1-211ENST00000509638 BTBD16Q32M84 506 aa27.64■■■□□ 2.01
LIMCH1-211ENST00000509638 OR9A2Q8NGT5 310 aa27.64■■■□□ 2.01
LIMCH1-211ENST00000509638 ZBTB18Q99592 522 aa27.64■■■□□ 2.01
LIMCH1-211ENST00000509638 CXorf21Q9HAI6 301 aa27.64■■■□□ 2.01
LIMCH1-211ENST00000509638 DYRK3O43781 588 aa27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 SNX3O60493 162 aa27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 SLC22A3O75751 556 aa27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 CELA2AP08217 269 aa27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 EFNA1P20827 205 aaPredicted RBP27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 GALNSP34059 522 aa27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 MPIP34949 423 aa27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 SQLEQ14534 574 aa27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 EXT1Q16394 746 aa27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 SPRED3Q2MJR0 410 aa27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 DPY19L1Q2PZI1 675 aa27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 FAM174BQ3ZCQ3 159 aa27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 SPANXN4Q5MJ08 99 aa27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 C6orf163Q5TEZ5 329 aa27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 METTL21CQ5VZV1 264 aa27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 PLAG1Q6DJT9 500 aa27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 PAOXQ6QHF9 649 aa27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 NFAM1Q8NET5 270 aaPredicted RBP27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 B3GNT7Q8NFL0 401 aa27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 ADCY4Q8NFM4 1077 aa27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 COQ8BQ96D53 544 aa27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 AMDHD1Q96NU7 426 aa27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 DUSP26Q9BV47 211 aa27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 CNPPD1Q9BV87 410 aa27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 ING2Q9H160 280 aa27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 GLIPR2Q9H4G4 154 aa27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 KCNMB2Q9Y691 235 aa27.63■■■□□ 2.01
LIMCH1-211ENST00000509638 DDAH2O95865 285 aa27.62■■■□□ 2.01
LIMCH1-211ENST00000509638 GPX3P22352 226 aa27.62■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms