RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 RIPK1Q13546 671 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 MLC1Q15049 377 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 OR52E8Q6IFG1 317 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 NAXDQ8IW45 347 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 METTL27Q8N6F8 245 aaPredicted RBP17.54■□□□□ 0.4
CLN3-206ENST00000360019 HIPK4Q8NE63 616 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 PNPT1Q8TCS8 783 aaKnown RBP17.54■□□□□ 0.4
CLN3-206ENST00000360019 ZNF681Q96N22 645 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 PRDM9Q9NQV7 894 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 SIRT3Q9NTG7 399 aaPredicted RBP17.54■□□□□ 0.4
CLN3-206ENST00000360019 FAM86C1Q9NVL1 165 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 EGFL7Q9UHF1 273 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 ACSL6Q9UKU0 697 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 GMEB1Q9Y692 573 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 FAM227AF5H4B4 570 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 AGRPO00253 132 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 CHST10O43529 356 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 CBFA2T3O75081 653 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 TLX1P31314 330 aaPredicted RBP17.54■□□□□ 0.4
CLN3-206ENST00000360019 FEN1P39748 380 aaKnown RBP17.54■□□□□ 0.4
CLN3-206ENST00000360019 CDK9P50750 372 aaKnown RBP17.54■□□□□ 0.4
CLN3-206ENST00000360019 GZMMP51124 257 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 OR4D2P58180 307 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 SKP1P63208 163 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 MAT1AQ00266 395 aaKnown RBP17.54■□□□□ 0.4
CLN3-206ENST00000360019 SPIDRQ14159 915 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 FXNQ16595 210 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 FAM214AQ32MH5 1076 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 NIPAL1Q6NVV3 410 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 TTLL10Q6ZVT0 673 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 GPR135Q8IZ08 494 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 OR5AK3PQ8NH89 298 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 BBS4Q96RK4 519 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 SLC35A5Q9BS91 424 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 NEUROD4Q9HD90 331 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 HCN3Q9P1Z3 774 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 SERTAD3Q9UJW9 196 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 ENTPD4Q9Y227 616 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 SPACA6W5XKT8 324 aa17.54■□□□□ 0.4
CLN3-206ENST00000360019 CFAP54Q96N23 3096 aa17.53■□□□□ 0.4
CLN3-206ENST00000360019 ZNF749O43361 778 aa17.53■□□□□ 0.4
CLN3-206ENST00000360019 HYAL3O43820 417 aaPredicted RBP17.53■□□□□ 0.4
CLN3-206ENST00000360019 HTR1EP28566 365 aa17.53■□□□□ 0.4
CLN3-206ENST00000360019 NTSP30990 170 aa17.53■□□□□ 0.4
CLN3-206ENST00000360019 PTGER1P34995 402 aa17.53■□□□□ 0.4
CLN3-206ENST00000360019 SOX11P35716 441 aa17.53■□□□□ 0.4
CLN3-206ENST00000360019 AVPR1BP47901 424 aa17.53■□□□□ 0.4
CLN3-206ENST00000360019 NCBP2P52298 156 aaKnown RBP eCLIP17.53■□□□□ 0.4
CLN3-206ENST00000360019 TRAP1Q12931 704 aaKnown RBP17.53■□□□□ 0.4
CLN3-206ENST00000360019 BNIP2Q12982 314 aa17.53■□□□□ 0.4
CLN3-206ENST00000360019 CSRP2Q16527 193 aa17.53■□□□□ 0.4
CLN3-206ENST00000360019 SYT16Q17RD7 645 aa17.53■□□□□ 0.4
CLN3-206ENST00000360019 PHF19Q5T6S3 580 aa17.53■□□□□ 0.4
CLN3-206ENST00000360019 TLDC1Q6P9B6 456 aa17.53■□□□□ 0.4
CLN3-206ENST00000360019 B3GNT8Q7Z7M8 397 aa17.53■□□□□ 0.4
CLN3-206ENST00000360019 CALHM3Q86XJ0 350 aa17.53■□□□□ 0.4
CLN3-206ENST00000360019 PTRH1Q86Y79 214 aaKnown RBP17.53■□□□□ 0.4
CLN3-206ENST00000360019 TRIML2Q8N7C3 387 aa17.53■□□□□ 0.4
CLN3-206ENST00000360019 BHLHE22Q8NFJ8 381 aaPredicted RBP17.53■□□□□ 0.4
CLN3-206ENST00000360019 PSMA8Q8TAA3 256 aa17.53■□□□□ 0.4
CLN3-206ENST00000360019 MMABQ96EY8 250 aaPredicted RBP17.53■□□□□ 0.4
CLN3-206ENST00000360019 TMEM121BQ9BXQ6 578 aaPredicted RBP17.53■□□□□ 0.4
CLN3-206ENST00000360019 FANCEQ9HB96 536 aa17.53■□□□□ 0.4
CLN3-206ENST00000360019 GPATCH2Q9NW75 528 aa17.53■□□□□ 0.4
CLN3-206ENST00000360019 SIDT1Q9NXL6 827 aaKnown RBP17.53■□□□□ 0.4
CLN3-206ENST00000360019 DHCR7Q9UBM7 475 aaKnown RBP17.53■□□□□ 0.4
CLN3-206ENST00000360019 PSME2Q9UL46 239 aa17.53■□□□□ 0.4
CLN3-206ENST00000360019 CLCA2Q9UQC9 943 aa17.53■□□□□ 0.4
CLN3-206ENST00000360019 EVPLLA8MZ36 301 aa17.52■□□□□ 0.4
CLN3-206ENST00000360019 ATP6V1G2O95670 118 aa17.52■□□□□ 0.4
CLN3-206ENST00000360019 NTRK1P04629 796 aa17.52■□□□□ 0.4
CLN3-206ENST00000360019 GPX2P18283 190 aa17.52■□□□□ 0.4
CLN3-206ENST00000360019 SOAT1P35610 550 aa17.52■□□□□ 0.4
CLN3-206ENST00000360019 PDX1P52945 283 aa17.52■□□□□ 0.4
CLN3-206ENST00000360019 MVDP53602 400 aa17.52■□□□□ 0.4
CLN3-206ENST00000360019 ACY1Q03154 408 aa17.52■□□□□ 0.4
CLN3-206ENST00000360019 GLIPR1L2Q4G1C9 344 aa17.52■□□□□ 0.4
CLN3-206ENST00000360019 OR4N5Q8IXE1 308 aa17.52■□□□□ 0.4
CLN3-206ENST00000360019 CCDC116Q8IYX3 515 aa17.52■□□□□ 0.4
CLN3-206ENST00000360019 NCDNQ9UBB6 729 aa17.52■□□□□ 0.4
CLN3-206ENST00000360019 AP3M1Q9Y2T2 418 aa17.52■□□□□ 0.4
CLN3-206ENST00000360019 SNX8Q9Y5X2 465 aa17.52■□□□□ 0.4
CLN3-206ENST00000360019 ZNF780BQ9Y6R6 833 aa17.52■□□□□ 0.4
CLN3-206ENST00000360019 SEC16AO15027 2179 aa17.52■□□□□ 0.39
CLN3-206ENST00000360019 SCN2AQ99250 2005 aa17.52■□□□□ 0.39
CLN3-206ENST00000360019 C4orf47A7E2U8 309 aa17.51■□□□□ 0.39
CLN3-206ENST00000360019 H0YIG0 161 aa17.51■□□□□ 0.39
CLN3-206ENST00000360019 CSNK2A2P19784 350 aaPredicted RBP17.51■□□□□ 0.39
CLN3-206ENST00000360019 ATP6V1B2P21281 511 aa17.51■□□□□ 0.39
CLN3-206ENST00000360019 TGM1P22735 817 aa17.51■□□□□ 0.39
CLN3-206ENST00000360019 FOLH1Q04609 750 aa17.51■□□□□ 0.39
CLN3-206ENST00000360019 ZFP36L1Q07352 338 aaKnown RBP17.51■□□□□ 0.39
CLN3-206ENST00000360019 ABHD18Q0P651 414 aa17.51■□□□□ 0.39
CLN3-206ENST00000360019 OR2T12Q8NG77 320 aa17.51■□□□□ 0.39
CLN3-206ENST00000360019 OR4K14Q8NGD5 310 aa17.51■□□□□ 0.39
CLN3-206ENST00000360019 FAM120BQ96EK7 910 aaKnown RBP17.51■□□□□ 0.39
CLN3-206ENST00000360019 OR6C1Q96RD1 312 aa17.51■□□□□ 0.39
CLN3-206ENST00000360019 RBCK1Q9BYM8 510 aa17.51■□□□□ 0.39
CLN3-206ENST00000360019 EPS8L2Q9H6S3 715 aa17.51■□□□□ 0.39
CLN3-206ENST00000360019 GIMAP4Q9NUV9 329 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms