RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 ZBTB20Q9HC78 741 aaPredicted RBP17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 MS4A12Q9NXJ0 267 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 TAS2R16Q9NYV7 291 aa17.43■□□□□ 0.38
SHKBP1-201ENST00000291842 MYO9BQ13459 2157 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 EFCAB9A8MZ26 197 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 M0R082 166 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 ALPPL2P10696 532 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 CCT3P49368 545 aaKnown RBP17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 MAPK11Q15759 364 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 DGUOKQ16854 277 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 UBE2UQ5VVX9 321 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 JPH3Q8WXH2 748 aaPredicted RBP17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 COX4I2Q96KJ9 171 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 SERHL2Q9H4I8 314 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 FZD3Q9NPG1 666 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 ERGIC3Q9Y282 383 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 MYO10Q9HD67 2058 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 ANHXE9PGG2 379 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 CDK1P06493 297 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 IGFBP1P08833 259 aaPredicted RBP17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 ZNF12P17014 697 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 GABRB1P18505 474 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 CBLP22681 906 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 MAT2AP31153 395 aaKnown RBP17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 PXNP49023 591 aaPredicted RBP17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 HMGA2P52926 109 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 CRISP3P54108 245 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 CSNK2BP67870 215 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 COL9A2Q14055 689 aaPredicted RBP17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 SYPL1Q16563 259 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 DEF8Q6ZN54 512 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 STX19Q8N4C7 294 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 KIAA1958Q8N8K9 716 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 MYDGFQ969H8 173 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 DPH7Q9BTV6 452 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 DOLKQ9UPQ8 538 aa17.42■□□□□ 0.38
SHKBP1-201ENST00000291842 MFN2O95140 757 aa17.41■□□□□ 0.38
SHKBP1-201ENST00000291842 OR12D1P0DN82 309 aa17.41■□□□□ 0.38
SHKBP1-201ENST00000291842 CD72P21854 359 aa17.41■□□□□ 0.38
SHKBP1-201ENST00000291842 HSD17B2P37059 387 aa17.41■□□□□ 0.38
SHKBP1-201ENST00000291842 SSR2P43308 183 aa17.41■□□□□ 0.38
SHKBP1-201ENST00000291842 ST3GAL4Q11206 333 aa17.41■□□□□ 0.38
SHKBP1-201ENST00000291842 KRT33BQ14525 404 aa17.41■□□□□ 0.38
SHKBP1-201ENST00000291842 DUSP6Q16828 381 aa17.41■□□□□ 0.38
SHKBP1-201ENST00000291842 TIGD6Q17RP2 521 aa17.41■□□□□ 0.38
SHKBP1-201ENST00000291842 OR4C11Q6IEV9 310 aa17.41■□□□□ 0.38
SHKBP1-201ENST00000291842 ZNF793Q6ZN11 406 aa17.41■□□□□ 0.38
SHKBP1-201ENST00000291842 YAF2Q8IY57 180 aa17.41■□□□□ 0.38
SHKBP1-201ENST00000291842 ZNF513Q8N8E2 541 aaPredicted RBP17.41■□□□□ 0.38
SHKBP1-201ENST00000291842 OR4D11Q8NGI4 311 aa17.41■□□□□ 0.38
SHKBP1-201ENST00000291842 CAMK1GQ96NX5 476 aa17.41■□□□□ 0.38
SHKBP1-201ENST00000291842 PCBD2Q9H0N5 130 aa17.41■□□□□ 0.38
SHKBP1-201ENST00000291842 A4GALTQ9NPC4 353 aa17.41■□□□□ 0.38
SHKBP1-201ENST00000291842 AKIP1Q9NQ31 210 aa17.41■□□□□ 0.38
SHKBP1-201ENST00000291842 PLCXD1Q9NUJ7 323 aa17.41■□□□□ 0.38
SHKBP1-201ENST00000291842 GDE1Q9NZC3 331 aa17.41■□□□□ 0.38
SHKBP1-201ENST00000291842 KLHL20Q9Y2M5 609 aa17.41■□□□□ 0.38
SHKBP1-201ENST00000291842 SLC28A2O43868 658 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 MRPS14O60783 128 aaKnown RBP17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 SULT1C4O75897 302 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 SOX14O95416 240 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 CHMP24386 653 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 TIE1P35590 1138 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 FEN1P39748 380 aaKnown RBP17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 CLK1P49759 484 aaKnown RBP17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 KCNC4Q03721 635 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 ZNF846Q147U1 533 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 SEC23BQ15437 767 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 RGS21Q2M5E4 152 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 TBC1D25Q3MII6 688 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 PERM1Q5SV97 790 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 NDUFAF5Q5TEU4 345 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 TP53I13Q8NBR0 393 aaPredicted RBP17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 OR2A1Q8NGT9 310 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 APOBEC4Q8WW27 367 aaKnown RBP17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 XAGE5Q8WWM1 108 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 SLC38A4Q969I6 547 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 ZHX1-C8orf76Q96EF9 292 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 ZBED6CLQ96FA7 236 aaPredicted RBP17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 COL21A1Q96P44 957 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 QRFPRQ96P65 431 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 BCL7BQ9BQE9 202 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 YIPF4Q9BSR8 244 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 BTBD2Q9BX70 525 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 RSPH9Q9H1X1 276 aaPredicted RBP17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 NEUROD4Q9HD90 331 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 HMG20AQ9NP66 347 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 GPSM3Q9Y4H4 160 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 CKAP5Q14008 2032 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 PRAMEF27A3QJZ7 478 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 PTHP01270 115 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 HSMCR30P0CW71 290 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 GADD45AP24522 165 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 CNR2P34972 360 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 GPC1P35052 558 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 PRKAG1P54619 331 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 PRDX1Q06830 199 aaKnown RBP17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 ZNF750Q32MQ0 723 aa17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 SOWAHCQ53LP3 525 aaPredicted RBP17.4■□□□□ 0.38
SHKBP1-201ENST00000291842 COLEC12Q5KU26 742 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms