RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 SMPDL3AQ92484 453 aa6.47□□□□□ -1.37
NUP54-215ENST00000514313 CASP10Q92851 521 aa6.47□□□□□ -1.37
NUP54-215ENST00000514313 MRPL53Q96EL3 112 aaKnown RBP6.47□□□□□ -1.37
NUP54-215ENST00000514313 C2orf48Q96LS8 159 aa6.47□□□□□ -1.37
NUP54-215ENST00000514313 NKX3-1Q99801 234 aaPredicted RBP6.47□□□□□ -1.37
NUP54-215ENST00000514313 SSX3Q99909 188 aa6.47□□□□□ -1.37
NUP54-215ENST00000514313 CCM2Q9BSQ5 444 aa6.47□□□□□ -1.37
NUP54-215ENST00000514313 TDRD1Q9BXT4 1180 aaKnown RBP6.47□□□□□ -1.37
NUP54-215ENST00000514313 DDX28Q9NUL7 540 aaKnown RBP6.47□□□□□ -1.37
NUP54-215ENST00000514313 COPS7AQ9UBW8 275 aa6.47□□□□□ -1.37
NUP54-215ENST00000514313 PLA2G4CQ9UP65 541 aa6.47□□□□□ -1.37
NUP54-215ENST00000514313 FAM205AQ6ZU69 1335 aa6.47□□□□□ -1.37
NUP54-215ENST00000514313 K7EPI3 171 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 BMPR1BO00238 502 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 SSX5O60225 188 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 KRT36O76013 467 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 PAK4O96013 591 aaPredicted RBP6.46□□□□□ -1.38
NUP54-215ENST00000514313 UMODP07911 640 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 CD48P09326 243 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 AADACP22760 399 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 MARCKSP29966 332 aaPredicted RBP6.46□□□□□ -1.38
NUP54-215ENST00000514313 STIP1P31948 543 aaKnown RBP6.46□□□□□ -1.38
NUP54-215ENST00000514313 HSPA1LP34931 641 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 CSNK2BP67870 215 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 IRX4P78413 519 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 GABPAQ06546 454 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 HEPACAMQ14CZ8 416 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 CEBPEQ15744 281 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 FASTKD1Q53R41 847 aaKnown RBP6.46□□□□□ -1.38
NUP54-215ENST00000514313 ATP1A1-AS1Q5TC04 95 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 NKAIN2Q5VXU1 208 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 PLPP4Q5VZY2 271 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 SNRNP48Q6IEG0 339 aaKnown RBP6.46□□□□□ -1.38
NUP54-215ENST00000514313 UNC5DQ6UXZ4 953 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 GPR148Q8TDV2 347 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 GANCQ8TET4 914 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 PRAC1Q96KF2 57 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 CXorf58Q96LI9 332 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 LURAP1Q96LR2 239 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 TAAR6Q96RI8 345 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 AGPAT1Q99943 283 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 PLEK2Q9NYT0 353 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 TEKT2Q9UIF3 430 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 KCNG2Q9UJ96 466 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 BLOC1S6Q9UL45 172 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 OR1A2Q9Y585 309 aa6.46□□□□□ -1.38
NUP54-215ENST00000514313 SPATA31D1Q6ZQQ2 1576 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 GLTPD2A6NH11 291 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 ZNF195O14628 629 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 B4GAT1O43505 415 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 ECE2O60344 883 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 SMPD2O60906 423 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 LRCH4O75427 683 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 CALCAP01258 141 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 IFNB1P01574 187 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 GSTA2P09210 222 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 CT45A8P0DMV1 189 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 CT45A9P0DMV2 189 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 CEACAM1P13688 526 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 PRDX6P30041 224 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 SOX3P41225 446 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 TNFRSF4P43489 277 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 SLC6A12P48065 614 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 GEMP55040 296 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 KCNJ10P78508 379 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 INAQ16352 499 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 FAM106AQ4KMX7 169 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 CT45A2Q5DJT8 189 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 C9orf50Q5SZB4 431 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 STPG1Q5TH74 334 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 PSRC1Q6PGN9 363 aaPredicted RBP6.45□□□□□ -1.38
NUP54-215ENST00000514313 TRMT1LQ7Z2T5 733 aaKnown RBP6.45□□□□□ -1.38
NUP54-215ENST00000514313 CCDC197Q8NCU1 140 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 OR5AP2Q8NGF4 316 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 OR10G8Q8NGN5 311 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 C14orf79Q96F83 325 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 GPR137Q96N19 417 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 S1PR3Q99500 378 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 IL12RB2Q99665 862 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 COQ7Q99807 217 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 MARCH7Q9H992 704 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 VIPAS39Q9H9C1 493 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 FAM212BQ9NTI7 297 aaPredicted RBP6.45□□□□□ -1.38
NUP54-215ENST00000514313 ZNF319Q9P2F9 582 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 SH3BGRL2Q9UJC5 107 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 C2CD2Q9Y426 696 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 ATP6V0A2Q9Y487 856 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 UBE4BO95155 1302 aa6.45□□□□□ -1.38
NUP54-215ENST00000514313 IGHV4-4A0A075B6R2 117 aa6.44□□□□□ -1.38
NUP54-215ENST00000514313 TMEM89A2RUT3 159 aa6.44□□□□□ -1.38
NUP54-215ENST00000514313 SLC1A7O00341 560 aa6.44□□□□□ -1.38
NUP54-215ENST00000514313 EEF2KO00418 725 aaKnown RBP6.44□□□□□ -1.38
NUP54-215ENST00000514313 P2RX6O15547 441 aa6.44□□□□□ -1.38
NUP54-215ENST00000514313 LMX1BO60663 402 aa6.44□□□□□ -1.38
NUP54-215ENST00000514313 AP2A2O94973 939 aa6.44□□□□□ -1.38
NUP54-215ENST00000514313 AKR7A3O95154 331 aa6.44□□□□□ -1.38
NUP54-215ENST00000514313 OR6A2O95222 327 aa6.44□□□□□ -1.38
NUP54-215ENST00000514313 MAP2K2P36507 400 aa6.44□□□□□ -1.38
NUP54-215ENST00000514313 LEPRP48357 1165 aaKnown RBP6.44□□□□□ -1.38
NUP54-215ENST00000514313 CCL11P51671 97 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms