RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 ZBTB32Q9Y2Y4 487 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 SDK1Q7Z5N4 2213 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 TOR1BO14657 336 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 TPST2O60704 377 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 CHRM1P11229 460 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 ZNF43P17038 809 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 EFNA1P20827 205 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 IL1R2P27930 398 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 ACSL1P33121 698 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 RPL14P50914 215 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 EFNA3P52797 238 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 NAGLUP54802 743 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 CCL7P80098 99 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 MPP1Q00013 466 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 COX10Q12887 443 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 CCDC92Q53HC0 331 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 C9orf135Q5VTT2 229 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 RHOJQ9H4E5 214 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 NLGN3Q9NZ94 848 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 SAMD4AQ9UPU9 718 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 OSGIN2Q9Y236 505 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 BAZ2BQ9UIF8 2168 aaKnown RBP8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 TMEM120BA0PK00 339 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 METTL12A8MUP2 240 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 NRG1Q02297 640 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 MSS51Q4VC12 460 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 SPIN4Q56A73 249 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 DRICH1Q6PGQ1 229 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 FCRL4Q96PJ5 515 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 CD180Q99467 661 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 ARL8BQ9NVJ2 186 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 PEAK1Q9H792 1746 aa8.84□□□□□ -0.99
LIMCH1-202ENST00000381753 LOC105369274A0A096LPK9 316 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 FEZF1A0PJY2 475 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 GPR89AB7ZAQ6 455 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 RDH16O75452 317 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 CXCL10P02778 98 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 GPR89BP0CG08 455 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 HOXA11P31270 313 aaPredicted RBP8.83□□□□□ -1
LIMCH1-202ENST00000381753 OR4N4Q8N0Y3 316 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 MAGEE2Q8TD90 523 aaPredicted RBP8.83□□□□□ -1
LIMCH1-202ENST00000381753 UBE2FQ969M7 185 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 TP53INP1Q96A56 240 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 CDKN2AIPNLQ96HQ2 116 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 MAGEE1Q9HCI5 957 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 H0Y8X5 98 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 FOXE1O00358 373 aaPredicted RBP8.83□□□□□ -1
LIMCH1-202ENST00000381753 LIASO43766 372 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 EIF4EP06730 217 aaKnown RBP8.83□□□□□ -1
LIMCH1-202ENST00000381753 PCMT1P22061 227 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 TNFRSF8P28908 595 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 OGFOD2Q6N063 350 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 TRAF7Q6Q0C0 670 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 PRR22Q8IZ63 422 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 C19orf47Q8N9M1 422 aaKnown RBP8.83□□□□□ -1
LIMCH1-202ENST00000381753 KIFC1Q9BW19 673 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 ADAM19Q9H013 955 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 OBP2BQ9NPH6 170 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 FKBP7Q9Y680 259 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 OR5K3A6NET4 321 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 SULT2B1O00204 365 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 PRAMEF2O60811 474 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 PRAMEF12O95522 483 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 FCGR1AP12314 374 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 RPS3P23396 243 aaKnown RBP eCLIP8.83□□□□□ -1
LIMCH1-202ENST00000381753 IDH2P48735 452 aaKnown RBP8.83□□□□□ -1
LIMCH1-202ENST00000381753 TARDBPQ13148 414 aaKnown RBP eCLIP8.83□□□□□ -1
LIMCH1-202ENST00000381753 SLAMF1Q13291 335 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 IER5LQ5T953 404 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 BPHLQ86WA6 291 aaPredicted RBP8.83□□□□□ -1
LIMCH1-202ENST00000381753 SIAH1Q8IUQ4 282 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 TIGD4Q8IY51 512 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 KYQ8NBH2 561 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 Q96MT0 163 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 FCRL5Q96RD9 977 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 HDHD2Q9H0R4 259 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 PLGRKTQ9HBL7 147 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 IL1RAPQ9NPH3 570 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 THUMPD1Q9NXG2 353 aaKnown RBP8.83□□□□□ -1
LIMCH1-202ENST00000381753 TOR4AQ9NXH8 423 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 VDAC3Q9Y277 283 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 PCDHGB1Q9Y5G3 927 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 C2orf72A6NCS6 295 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 TLCD2A6NGC4 264 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 OR51F1A6NGY5 319 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 SH2D7A6NKC9 451 aaPredicted RBP8.83□□□□□ -1
LIMCH1-202ENST00000381753 LRRC30A6NM36 301 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 CENPXA8MT69 81 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 CCL21O00585 134 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 ZNF500O60304 480 aaPredicted RBP8.83□□□□□ -1
LIMCH1-202ENST00000381753 STK17BO94768 372 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 RLN1P04808 185 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 ZNF16P17020 682 aaPredicted RBP8.83□□□□□ -1
LIMCH1-202ENST00000381753 FAM86B1Q8N7N1 296 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 ZNF689Q96CS4 500 aaPredicted RBP8.83□□□□□ -1
LIMCH1-202ENST00000381753 OMA1Q96E52 524 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 KREMEN1Q96MU8 473 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 APOL4Q9BPW4 351 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 LRFN3Q9BTN0 628 aa8.83□□□□□ -1
LIMCH1-202ENST00000381753 SPRTNQ9H040 489 aaPredicted RBP8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms