RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 PRO3102Q9H379 93 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 TUBB1Q9H4B7 451 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 B3GAT2Q9NPZ5 323 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 SERINC1Q9NRX5 453 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 BLOC1S4Q9NUP1 217 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 SEC63Q9UGP8 760 aaKnown RBP2.78□□□□□ -1.96
SCFD1-219ENST00000556413 GRIP1Q9Y3R0 1128 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 WIPI2Q9Y4P8 454 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 ARAP2Q8WZ64 1704 aa2.78□□□□□ -1.96
SCFD1-219ENST00000556413 SPTBN5Q9NRC6 3674 aaKnown RBP2.78□□□□□ -1.97
SCFD1-219ENST00000556413 UNC80Q8N2C7 3258 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 OR2A25A4D2G3 310 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 C2orf81A6NN90 581 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 TFECO14948 347 aaPredicted RBP2.77□□□□□ -1.97
SCFD1-219ENST00000556413 MED24O75448 989 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 WDHD1O75717 1129 aaPredicted RBP2.77□□□□□ -1.97
SCFD1-219ENST00000556413 POP4O95707 220 aaKnown RBP2.77□□□□□ -1.97
SCFD1-219ENST00000556413 DARSP14868 501 aaKnown RBP2.77□□□□□ -1.97
SCFD1-219ENST00000556413 OXTRP30559 389 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 HOXD13P35453 343 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 PSMB10P40306 273 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 SLC15A1P46059 708 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 PSMC6P62333 389 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 DYNLL1P63167 89 aaKnown RBP2.77□□□□□ -1.97
SCFD1-219ENST00000556413 CDK3Q00526 305 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 CREB5Q02930 508 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 CALD1Q05682 793 aaKnown RBP2.77□□□□□ -1.97
SCFD1-219ENST00000556413 SPP2Q13103 211 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 AIMP2Q13155 320 aaKnown RBP2.77□□□□□ -1.97
SCFD1-219ENST00000556413 NR1D2Q14995 579 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 ZNF74Q16587 644 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 ODF4Q2M2E3 257 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 DUSP28Q4G0W2 176 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 CAVIN4Q5BKX8 364 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 ELFN2Q5R3F8 820 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 FAM205BPQ63HN1 556 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 NOTUMQ6P988 496 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 C15orf52Q6ZUT6 534 aaKnown RBP2.77□□□□□ -1.97
SCFD1-219ENST00000556413 TMPRSS11FQ6ZWK6 438 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 SZRD1Q7Z422 152 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 ZFAND4Q86XD8 727 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 DZIP1Q86YF9 867 aaKnown RBP2.77□□□□□ -1.97
SCFD1-219ENST00000556413 GPD1LQ8N335 351 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 KLHL30-AS1Q8NEE0 82 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 SPAG5Q96R06 1193 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 LGMNQ99538 433 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 PORCNQ9H237 461 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 GHITMQ9H3K2 345 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 KCNK15Q9H427 330 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 SMARCAD1Q9H4L7 1026 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 FAM207AQ9NSI2 230 aaPredicted RBP2.77□□□□□ -1.97
SCFD1-219ENST00000556413 SUCLA2Q9P2R7 463 aaPredicted RBP2.77□□□□□ -1.97
SCFD1-219ENST00000556413 TSPAN16Q9UKR8 245 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 ZNF215Q9UL58 517 aaPredicted RBP2.77□□□□□ -1.97
SCFD1-219ENST00000556413 STUB1Q9UNE7 303 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 A0A0C4DFX4 3053 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 VCANP13611 3396 aa2.77□□□□□ -1.97
SCFD1-219ENST00000556413 HCFC1P51610 2035 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 RFX7Q2KHR2 1363 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 KIAA0100Q14667 2235 aaKnown RBP2.76□□□□□ -1.97
SCFD1-219ENST00000556413 ITIH6Q6UXX5 1313 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 MROH5Q6ZUA9 1318 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 A0A1W2PQ09 198 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 A6NCN8 305 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 ZBED4O75132 1171 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 LRCH4O75427 683 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 ZWINTO95229 277 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 PDHA2P29803 388 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 MNDAP41218 407 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 CLCN4P51793 760 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 GEMIN4P57678 1058 aaKnown RBP2.76□□□□□ -1.97
SCFD1-219ENST00000556413 TIMM10P62072 90 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 FKBP1AP62942 108 aaKnown RBP2.76□□□□□ -1.97
SCFD1-219ENST00000556413 MC1RQ01726 317 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 MECOMQ03112 1051 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 ZNF415Q09FC8 603 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 FCHO2Q0JRZ9 810 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 TFCP2Q12800 502 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 UGT3A1Q6NUS8 523 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 VITQ6UXI7 678 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 RAPH1Q70E73 1250 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 LDB1Q86U70 411 aaPredicted RBP2.76□□□□□ -1.97
SCFD1-219ENST00000556413 FAM131BQ86XD5 332 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 FAM151AQ8WW52 585 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 FAM120BQ96EK7 910 aaKnown RBP2.76□□□□□ -1.97
SCFD1-219ENST00000556413 SAT2Q96F10 170 aaPredicted RBP2.76□□□□□ -1.97
SCFD1-219ENST00000556413 CNRIP1Q96F85 164 aaPredicted RBP2.76□□□□□ -1.97
SCFD1-219ENST00000556413 CNOT6LQ96LI5 555 aaKnown RBP2.76□□□□□ -1.97
SCFD1-219ENST00000556413 PAFAH2Q99487 392 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 NAP1L4Q99733 375 aaKnown RBP2.76□□□□□ -1.97
SCFD1-219ENST00000556413 MAP3K3Q99759 626 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 OVOL2Q9BRP0 275 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 KIFC3Q9BVG8 833 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 MIS12Q9H081 205 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 FAM49AQ9H0Q0 323 aaPredicted RBP2.76□□□□□ -1.97
SCFD1-219ENST00000556413 C11orf49Q9H6J7 331 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 AATFQ9NY61 560 aaKnown RBP eCLIP2.76□□□□□ -1.97
SCFD1-219ENST00000556413 RAI14Q9P0K7 980 aa2.76□□□□□ -1.97
SCFD1-219ENST00000556413 THAP10Q9P2Z0 257 aaPredicted RBP2.76□□□□□ -1.97
SCFD1-219ENST00000556413 STYXL1Q9Y6J8 313 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms