RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 FANCIQ9NVI1 1328 aa17.16■□□□□ 0.34
GTF3A-209ENST00000640289 COL5A3P25940 1745 aaPredicted RBP17.16■□□□□ 0.34
GTF3A-209ENST00000640289 GOLGA2Q08379 1002 aa17.15■□□□□ 0.34
GTF3A-209ENST00000640289 RC3H1Q5TC82 1133 aaKnown RBP17.15■□□□□ 0.34
GTF3A-209ENST00000640289 CDCA7LQ96GN5 454 aa17.15■□□□□ 0.34
GTF3A-209ENST00000640289 CCDC87Q9NVE4 849 aa17.15■□□□□ 0.34
GTF3A-209ENST00000640289 ZBTB1Q9Y2K1 713 aa17.15■□□□□ 0.34
GTF3A-209ENST00000640289 PNPLA7Q6ZV29 1317 aa17.15■□□□□ 0.34
GTF3A-209ENST00000640289 ELL2O00472 640 aaPredicted RBP17.14■□□□□ 0.33
GTF3A-209ENST00000640289 PHF14O94880 888 aa17.14■□□□□ 0.33
GTF3A-209ENST00000640289 STARD3NLO95772 234 aa17.14■□□□□ 0.33
GTF3A-209ENST00000640289 A1BGP04217 495 aa17.14■□□□□ 0.33
GTF3A-209ENST00000640289 HMGB2P26583 209 aaKnown RBP17.14■□□□□ 0.33
GTF3A-209ENST00000640289 PIP4K2AP48426 406 aaPredicted RBP17.14■□□□□ 0.33
GTF3A-209ENST00000640289 PDGFDQ9GZP0 370 aaPredicted RBP17.14■□□□□ 0.33
GTF3A-209ENST00000640289 CANXP27824 592 aaKnown RBP17.13■□□□□ 0.33
GTF3A-209ENST00000640289 DUSP27Q5VZP5 1158 aa17.13■□□□□ 0.33
GTF3A-209ENST00000640289 C8orf58Q8NAV2 365 aa17.13■□□□□ 0.33
GTF3A-209ENST00000640289 RPS6KA4O75676 772 aa17.12■□□□□ 0.33
GTF3A-209ENST00000640289 EIF2S2P20042 333 aaKnown RBP17.12■□□□□ 0.33
GTF3A-209ENST00000640289 TSPYL6Q8N831 410 aa17.12■□□□□ 0.33
GTF3A-209ENST00000640289 NECTIN2Q92692 538 aa17.12■□□□□ 0.33
GTF3A-209ENST00000640289 MYH16Q9H6N6 1097 aa17.12■□□□□ 0.33
GTF3A-209ENST00000640289 RTCBQ9Y3I0 505 aaKnown RBP17.12■□□□□ 0.33
GTF3A-209ENST00000640289 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.11■□□□□ 0.33
GTF3A-209ENST00000640289 SLFN5Q08AF3 891 aa17.11■□□□□ 0.33
GTF3A-209ENST00000640289 COL23A1Q86Y22 540 aaPredicted RBP17.11■□□□□ 0.33
GTF3A-209ENST00000640289 NBPF26B4DH59 902 aa17.1■□□□□ 0.33
GTF3A-209ENST00000640289 E9PSI1 815 aa17.1■□□□□ 0.33
GTF3A-209ENST00000640289 SSFA2P28290 1259 aa17.1■□□□□ 0.33
GTF3A-209ENST00000640289 EXOSC9Q06265 439 aaKnown RBP17.1■□□□□ 0.33
GTF3A-209ENST00000640289 NBPF10Q6P3W6 841 aaKnown RBP17.1■□□□□ 0.33
GTF3A-209ENST00000640289 NBPF15Q8N660 670 aa17.1■□□□□ 0.33
GTF3A-209ENST00000640289 ZNF330Q9Y3S2 320 aaPredicted RBP17.1■□□□□ 0.33
GTF3A-209ENST00000640289 SOS1Q07889 1333 aaPredicted RBP17.1■□□□□ 0.33
GTF3A-209ENST00000640289 TUBGCP6Q96RT7 1819 aa17.1■□□□□ 0.33
GTF3A-209ENST00000640289 MYH14Q7Z406 1995 aaKnown RBP17.09■□□□□ 0.33
GTF3A-209ENST00000640289 MSH5O43196 834 aa17.09■□□□□ 0.33
GTF3A-209ENST00000640289 HOXB7P09629 217 aa17.09■□□□□ 0.33
GTF3A-209ENST00000640289 UBR3Q6ZT12 1888 aa17.08■□□□□ 0.33
GTF3A-209ENST00000640289 LAMB4A4D0S4 1761 aa17.08■□□□□ 0.33
GTF3A-209ENST00000640289 ZBED9Q6R2W3 1325 aa17.08■□□□□ 0.32
GTF3A-209ENST00000640289 TWISTNBQ3B726 338 aaPredicted RBP17.08■□□□□ 0.32
GTF3A-209ENST00000640289 TRAPPC3LQ5T215 181 aa17.08■□□□□ 0.32
GTF3A-209ENST00000640289 HDGFL1Q5TGJ6 251 aa17.08■□□□□ 0.32
GTF3A-209ENST00000640289 ARHGEF1Q92888 912 aaKnown RBP17.08■□□□□ 0.32
GTF3A-209ENST00000640289 COL15A1P39059 1388 aa17.07■□□□□ 0.32
GTF3A-209ENST00000640289 ANXA1P04083 346 aa17.07■□□□□ 0.32
GTF3A-209ENST00000640289 MYL6BP14649 208 aa17.07■□□□□ 0.32
GTF3A-209ENST00000640289 IL6STP40189 918 aaPredicted RBP17.07■□□□□ 0.32
GTF3A-209ENST00000640289 EIF5P55010 431 aaKnown RBP17.07■□□□□ 0.32
GTF3A-209ENST00000640289 PDIA6Q15084 440 aa17.07■□□□□ 0.32
GTF3A-209ENST00000640289 TRMT2AQ8IZ69 625 aaKnown RBP17.07■□□□□ 0.32
GTF3A-209ENST00000640289 FLAD1Q8NFF5 587 aa17.07■□□□□ 0.32
GTF3A-209ENST00000640289 ADRA2BP18089 450 aa17.06■□□□□ 0.32
GTF3A-209ENST00000640289 PROSER3Q2NL68 480 aa17.06■□□□□ 0.32
GTF3A-209ENST00000640289 YTHDC1Q96MU7 727 aaKnown RBP17.06■□□□□ 0.32
GTF3A-209ENST00000640289 CASZ1Q86V15 1759 aa17.05■□□□□ 0.32
GTF3A-209ENST00000640289 VAMP4O75379 141 aa17.05■□□□□ 0.32
GTF3A-209ENST00000640289 ZBTB7AO95365 584 aa17.05■□□□□ 0.32
GTF3A-209ENST00000640289 CHPF2Q9P2E5 772 aa17.05■□□□□ 0.32
GTF3A-209ENST00000640289 SRP68Q9UHB9 627 aaKnown RBP17.05■□□□□ 0.32
GTF3A-209ENST00000640289 QSER1Q2KHR3 1735 aa17.04■□□□□ 0.32
GTF3A-209ENST00000640289 ERBB4Q15303 1308 aa17.04■□□□□ 0.32
GTF3A-209ENST00000640289 TCERG1O14776 1098 aaKnown RBP17.04■□□□□ 0.32
GTF3A-209ENST00000640289 RFC4P35249 363 aa17.04■□□□□ 0.32
GTF3A-209ENST00000640289 LRP10Q7Z4F1 713 aa17.04■□□□□ 0.32
GTF3A-209ENST00000640289 TBC1D2BQ9UPU7 963 aa17.04■□□□□ 0.32
GTF3A-209ENST00000640289 MSL1Q68DK7 614 aa17.03■□□□□ 0.32
GTF3A-209ENST00000640289 ARXQ96QS3 562 aa17.03■□□□□ 0.32
GTF3A-209ENST00000640289 USP42Q9H9J4 1324 aaKnown RBP17.02■□□□□ 0.32
GTF3A-209ENST00000640289 USPL1Q5W0Q7 1092 aa17.02■□□□□ 0.32
GTF3A-209ENST00000640289 NPM2Q86SE8 214 aaKnown RBP17.02■□□□□ 0.32
GTF3A-209ENST00000640289 DDX21Q9NR30 783 aaKnown RBP eCLIP17.02■□□□□ 0.32
GTF3A-209ENST00000640289 ATF5Q9Y2D1 282 aaPredicted RBP17.02■□□□□ 0.32
GTF3A-209ENST00000640289 A0A087WZG4 1122 aa17.01■□□□□ 0.31
GTF3A-209ENST00000640289 CCDC30Q5VVM6 783 aa17.01■□□□□ 0.31
GTF3A-209ENST00000640289 TTLL7Q6ZT98 887 aa17.01■□□□□ 0.31
GTF3A-209ENST00000640289 DZIP3Q86Y13 1208 aaKnown RBP17.01■□□□□ 0.31
GTF3A-209ENST00000640289 SLC16A10Q8TF71 515 aa17.01■□□□□ 0.31
GTF3A-209ENST00000640289 MTFR1LQ9H019 292 aa17.01■□□□□ 0.31
GTF3A-209ENST00000640289 DBF4Q9UBU7 674 aaPredicted RBP17.01■□□□□ 0.31
GTF3A-209ENST00000640289 NARFQ9UHQ1 456 aa17.01■□□□□ 0.31
GTF3A-209ENST00000640289 ZPR1O75312 459 aa17■□□□□ 0.31
GTF3A-209ENST00000640289 C4AP0C0L4 1744 aa17■□□□□ 0.31
GTF3A-209ENST00000640289 GYS1P13807 737 aa17■□□□□ 0.31
GTF3A-209ENST00000640289 AIMP1Q12904 312 aaKnown RBP17■□□□□ 0.31
GTF3A-209ENST00000640289 BCL2L12Q9HB09 334 aa17■□□□□ 0.31
GTF3A-209ENST00000640289 CAMTA2O94983 1202 aa16.99■□□□□ 0.31
GTF3A-209ENST00000640289 COPS6Q7L5N1 327 aa16.99■□□□□ 0.31
GTF3A-209ENST00000640289 XAGE3Q8WTP9 111 aa16.99■□□□□ 0.31
GTF3A-209ENST00000640289 PHAXQ9H814 394 aaKnown RBP16.99■□□□□ 0.31
GTF3A-209ENST00000640289 FKBP8Q14318 412 aa16.98■□□□□ 0.31
GTF3A-209ENST00000640289 STK31Q9BXU1 1019 aa16.98■□□□□ 0.31
GTF3A-209ENST00000640289 CHMP4AQ9BY43 222 aa16.97■□□□□ 0.31
GTF3A-209ENST00000640289 ZBTB3Q9H5J0 574 aa16.97■□□□□ 0.31
GTF3A-209ENST00000640289 HYPKQ9NX55 129 aa16.97■□□□□ 0.31
GTF3A-209ENST00000640289 SLC4A2P04920 1241 aa16.96■□□□□ 0.31
GTF3A-209ENST00000640289 PTGER2P43116 358 aa16.96■□□□□ 0.31
GTF3A-209ENST00000640289 HLFQ16534 295 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms