RNA–Protein interactions for RNA: ENST00000638016.1

PNKP-230, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 109 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-230ENST00000638016 BTBD11A6QL63 1104 aa23.6■■□□□ 1.37
PNKP-230ENST00000638016 DDR1Q08345 913 aa23.6■■□□□ 1.37
PNKP-230ENST00000638016 USPL1Q5W0Q7 1092 aa23.6■■□□□ 1.37
PNKP-230ENST00000638016 PLEKHF1Q96S99 279 aa23.6■■□□□ 1.37
PNKP-230ENST00000638016 RTF1Q92541 710 aaKnown RBP23.59■■□□□ 1.37
PNKP-230ENST00000638016 PXDNLA1KZ92 1463 aa23.59■■□□□ 1.37
PNKP-230ENST00000638016 PRAMEF22A3QJZ6 481 aa23.58■■□□□ 1.37
PNKP-230ENST00000638016 RALBP1Q15311 655 aa23.58■■□□□ 1.37
PNKP-230ENST00000638016 PARP3Q9Y6F1 533 aa23.57■■□□□ 1.36
PNKP-230ENST00000638016 ZNF784Q8NCA9 323 aaPredicted RBP23.56■■□□□ 1.36
PNKP-230ENST00000638016 FMNL2Q96PY5 1086 aa23.56■■□□□ 1.36
PNKP-230ENST00000638016 THUMPD2Q9BTF0 503 aaKnown RBP23.56■■□□□ 1.36
PNKP-230ENST00000638016 BCL2L12Q9HB09 334 aa23.56■■□□□ 1.36
PNKP-230ENST00000638016 PIP4K2AP48426 406 aaPredicted RBP23.55■■□□□ 1.36
PNKP-230ENST00000638016 MIS18AQ9NYP9 233 aa23.55■■□□□ 1.36
PNKP-230ENST00000638016 A0A0G2JLW4 131 aa23.54■■□□□ 1.36
PNKP-230ENST00000638016 ZPR1O75312 459 aa23.54■■□□□ 1.36
PNKP-230ENST00000638016 STARD3NLO95772 234 aa23.54■■□□□ 1.36
PNKP-230ENST00000638016 A1BGP04217 495 aa23.54■■□□□ 1.36
PNKP-230ENST00000638016 NARFQ9UHQ1 456 aa23.54■■□□□ 1.36
PNKP-230ENST00000638016 ZNF330Q9Y3S2 320 aaPredicted RBP23.54■■□□□ 1.36
PNKP-230ENST00000638016 MYBBP1AQ9BQG0 1328 aaKnown RBP23.54■■□□□ 1.36
PNKP-230ENST00000638016 POLRMTO00411 1230 aaKnown RBP23.53■■□□□ 1.36
PNKP-230ENST00000638016 EIF5P55010 431 aaKnown RBP23.53■■□□□ 1.36
PNKP-230ENST00000638016 USP16Q9Y5T5 823 aa23.53■■□□□ 1.36
PNKP-230ENST00000638016 AFDNP55196 1824 aaKnown RBP23.53■■□□□ 1.36
PNKP-230ENST00000638016 TM4SF1P30408 202 aa23.52■■□□□ 1.36
PNKP-230ENST00000638016 HTATSF1O43719 755 aaKnown RBP23.51■■□□□ 1.35
PNKP-230ENST00000638016 GRIN3BO60391 1043 aa23.51■■□□□ 1.35
PNKP-230ENST00000638016 DPEP1P16444 411 aa23.51■■□□□ 1.35
PNKP-230ENST00000638016 NFIXQ14938 502 aa23.51■■□□□ 1.35
PNKP-230ENST00000638016 NFE2L2Q16236 605 aa23.51■■□□□ 1.35
PNKP-230ENST00000638016 BRCA1P38398 1863 aaKnown RBP23.51■■□□□ 1.35
PNKP-230ENST00000638016 SCN7AQ01118 1682 aa23.51■■□□□ 1.35
PNKP-230ENST00000638016 KDM3BQ7LBC6 1761 aa23.5■■□□□ 1.35
PNKP-230ENST00000638016 NEFMP07197 916 aa23.49■■□□□ 1.35
PNKP-230ENST00000638016 TBC1D2BQ9UPU7 963 aa23.49■■□□□ 1.35
PNKP-230ENST00000638016 MAPK8IP3Q9UPT6 1336 aa23.49■■□□□ 1.35
PNKP-230ENST00000638016 TAF7Q15545 349 aaPredicted RBP23.48■■□□□ 1.35
PNKP-230ENST00000638016 CCDC146Q8IYE0 955 aa23.48■■□□□ 1.35
PNKP-230ENST00000638016 TEX13AQ9BXU3 409 aaPredicted RBP23.48■■□□□ 1.35
PNKP-230ENST00000638016 NRXN2Q9P2S2 1712 aa23.47■■□□□ 1.35
PNKP-230ENST00000638016 TGFB2P61812 414 aa23.47■■□□□ 1.35
PNKP-230ENST00000638016 BICDL1Q6ZP65 573 aa23.47■■□□□ 1.35
PNKP-230ENST00000638016 KCNA3P22001 575 aa23.46■■□□□ 1.35
PNKP-230ENST00000638016 PRKRIP1Q9H875 184 aaPredicted RBP23.46■■□□□ 1.35
PNKP-230ENST00000638016 BCS1LQ9Y276 419 aa23.46■■□□□ 1.35
PNKP-230ENST00000638016 CARMIL3Q8ND23 1372 aa23.45■■□□□ 1.34
PNKP-230ENST00000638016 SNRPA1P09661 255 aaKnown RBP23.45■■□□□ 1.34
PNKP-230ENST00000638016 CHRNA5P30532 468 aa23.45■■□□□ 1.34
PNKP-230ENST00000638016 IL6STP40189 918 aaPredicted RBP23.45■■□□□ 1.34
PNKP-230ENST00000638016 TBC1D9BQ66K14 1250 aa23.45■■□□□ 1.34
PNKP-230ENST00000638016 RRP7AQ9Y3A4 280 aaKnown RBP23.45■■□□□ 1.34
PNKP-230ENST00000638016 BCORQ6W2J9 1755 aa23.45■■□□□ 1.34
PNKP-230ENST00000638016 LAMB4A4D0S4 1761 aa23.44■■□□□ 1.34
PNKP-230ENST00000638016 A0A087WZG4 1122 aa23.42■■□□□ 1.34
PNKP-230ENST00000638016 NBPF26B4DH59 902 aa23.42■■□□□ 1.34
PNKP-230ENST00000638016 CAMTA2O94983 1202 aa23.42■■□□□ 1.34
PNKP-230ENST00000638016 SERPINB2P05120 415 aa23.42■■□□□ 1.34
PNKP-230ENST00000638016 NBPF10Q6P3W6 841 aaKnown RBP23.42■■□□□ 1.34
PNKP-230ENST00000638016 NBPF15Q8N660 670 aa23.42■■□□□ 1.34
PNKP-230ENST00000638016 PNNQ9H307 717 aaKnown RBP23.42■■□□□ 1.34
PNKP-230ENST00000638016 TMPOP42166 694 aaKnown RBP23.41■■□□□ 1.34
PNKP-230ENST00000638016 RIPK4P57078 832 aa23.41■■□□□ 1.34
PNKP-230ENST00000638016 CCDC24Q8N4L8 307 aa23.41■■□□□ 1.34
PNKP-230ENST00000638016 DZIP3Q86Y13 1208 aaKnown RBP23.4■■□□□ 1.34
PNKP-230ENST00000638016 ANKRD31Q8N7Z5 1873 aa23.39■■□□□ 1.34
PNKP-230ENST00000638016 EIF4A1P60842 406 aaKnown RBP23.39■■□□□ 1.33
PNKP-230ENST00000638016 NEUROD2Q15784 382 aa23.39■■□□□ 1.33
PNKP-230ENST00000638016 ADAMTS8Q9UP79 889 aa23.39■■□□□ 1.33
PNKP-230ENST00000638016 ATP10DQ9P241 1426 aa23.39■■□□□ 1.33
PNKP-230ENST00000638016 ARFGEF1Q9Y6D6 1849 aa23.38■■□□□ 1.33
PNKP-230ENST00000638016 ZEB1P37275 1124 aaPredicted RBP23.38■■□□□ 1.33
PNKP-230ENST00000638016 ADCY9O60503 1353 aa23.38■■□□□ 1.33
PNKP-230ENST00000638016 GIGYF1O75420 1035 aaPredicted RBP23.37■■□□□ 1.33
PNKP-230ENST00000638016 WDR43Q15061 677 aaKnown RBP eCLIP23.37■■□□□ 1.33
PNKP-230ENST00000638016 PNISRQ8TF01 805 aaKnown RBP23.36■■□□□ 1.33
PNKP-230ENST00000638016 PIM2Q9P1W9 311 aa23.36■■□□□ 1.33
PNKP-230ENST00000638016 DLEC1Q9Y238 1755 aa23.36■■□□□ 1.33
PNKP-230ENST00000638016 NPM2Q86SE8 214 aaKnown RBP23.35■■□□□ 1.33
PNKP-230ENST00000638016 TSPYL4Q9UJ04 414 aa23.35■■□□□ 1.33
PNKP-230ENST00000638016 COL11A2P13942 1736 aaPredicted RBP23.35■■□□□ 1.33
PNKP-230ENST00000638016 CCDC184Q52MB2 194 aa23.34■■□□□ 1.33
PNKP-230ENST00000638016 ARHGAP27Q6ZUM4 889 aa23.34■■□□□ 1.33
PNKP-230ENST00000638016 NGEFQ8N5V2 710 aa23.34■■□□□ 1.33
PNKP-230ENST00000638016 ZNF526Q8TF50 670 aaPredicted RBP23.34■■□□□ 1.33
PNKP-230ENST00000638016 DALRD3Q5D0E6 543 aaKnown RBP23.33■■□□□ 1.33
PNKP-230ENST00000638016 PRR5LQ6MZQ0 368 aa23.33■■□□□ 1.33
PNKP-230ENST00000638016 RUNDC1Q96C34 613 aa23.33■■□□□ 1.33
PNKP-230ENST00000638016 TRIM35Q9UPQ4 493 aa23.32■■□□□ 1.32
PNKP-230ENST00000638016 C2CD5Q86YS7 1000 aa23.31■■□□□ 1.32
PNKP-230ENST00000638016 HLFQ16534 295 aa23.3■■□□□ 1.32
PNKP-230ENST00000638016 SETDB2Q96T68 719 aa23.3■■□□□ 1.32
PNKP-230ENST00000638016 MYL6BP14649 208 aa23.29■■□□□ 1.32
PNKP-230ENST00000638016 KRT24Q2M2I5 525 aa23.29■■□□□ 1.32
PNKP-230ENST00000638016 LMOD3Q0VAK6 560 aa23.28■■□□□ 1.32
PNKP-230ENST00000638016 TTLL7Q6ZT98 887 aa23.28■■□□□ 1.32
PNKP-230ENST00000638016 CNBD1Q8NA66 436 aa23.28■■□□□ 1.32
PNKP-230ENST00000638016 FAM177BA6PVY3 158 aa23.27■■□□□ 1.32
PNKP-230ENST00000638016 LAS1LQ9Y4W2 734 aaKnown RBP23.27■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms