RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 PRKRIP1Q9H875 184 aaPredicted RBP25.51■■□□□ 1.67
CLN3-260ENST00000637578 YY1P25490 414 aa25.5■■□□□ 1.67
CLN3-260ENST00000637578 FKBP8Q14318 412 aa25.48■■□□□ 1.67
CLN3-260ENST00000637578 TAF7Q15545 349 aaPredicted RBP25.48■■□□□ 1.67
CLN3-260ENST00000637578 COL15A1P39059 1388 aa25.48■■□□□ 1.67
CLN3-260ENST00000637578 EIF5P55010 431 aaKnown RBP25.48■■□□□ 1.67
CLN3-260ENST00000637578 NARFQ9UHQ1 456 aa25.48■■□□□ 1.67
CLN3-260ENST00000637578 YBX3P16989 372 aaKnown RBP eCLIP25.47■■□□□ 1.67
CLN3-260ENST00000637578 GOLGB1Q14789 3259 aaKnown RBP25.46■■□□□ 1.67
CLN3-260ENST00000637578 ZPR1O75312 459 aa25.46■■□□□ 1.67
CLN3-260ENST00000637578 MAPK8IP3Q9UPT6 1336 aa25.46■■□□□ 1.67
CLN3-260ENST00000637578 CANXP27824 592 aaKnown RBP25.45■■□□□ 1.66
CLN3-260ENST00000637578 TM4SF1P30408 202 aa25.45■■□□□ 1.66
CLN3-260ENST00000637578 USPL1Q5W0Q7 1092 aa25.45■■□□□ 1.66
CLN3-260ENST00000637578 PARP3Q9Y6F1 533 aa25.45■■□□□ 1.66
CLN3-260ENST00000637578 DLG5Q8TDM6 1919 aa25.44■■□□□ 1.66
CLN3-260ENST00000637578 C10orf71Q711Q0 1435 aa25.44■■□□□ 1.66
CLN3-260ENST00000637578 KIF13BQ9NQT8 1826 aa25.43■■□□□ 1.66
CLN3-260ENST00000637578 SNRPA1P09661 255 aaKnown RBP25.43■■□□□ 1.66
CLN3-260ENST00000637578 DDR1Q08345 913 aa25.43■■□□□ 1.66
CLN3-260ENST00000637578 PELP1Q8IZL8 1130 aaKnown RBP25.43■■□□□ 1.66
CLN3-260ENST00000637578 BCL2L12Q9HB09 334 aa25.43■■□□□ 1.66
CLN3-260ENST00000637578 USP16Q9Y5T5 823 aa25.43■■□□□ 1.66
CLN3-260ENST00000637578 GRIN3BO60391 1043 aa25.42■■□□□ 1.66
CLN3-260ENST00000637578 IL6STP40189 918 aaPredicted RBP25.42■■□□□ 1.66
CLN3-260ENST00000637578 TGFB2P61812 414 aa25.42■■□□□ 1.66
CLN3-260ENST00000637578 A0A087WZG4 1122 aa25.41■■□□□ 1.66
CLN3-260ENST00000637578 A1BGP04217 495 aa25.41■■□□□ 1.66
CLN3-260ENST00000637578 PNISRQ8TF01 805 aaKnown RBP25.41■■□□□ 1.66
CLN3-260ENST00000637578 PRAMEF22A3QJZ6 481 aa25.4■■□□□ 1.66
CLN3-260ENST00000637578 POLRMTO00411 1230 aaKnown RBP25.4■■□□□ 1.66
CLN3-260ENST00000637578 MIS18AQ9NYP9 233 aa25.4■■□□□ 1.66
CLN3-260ENST00000637578 TMPOP42166 694 aaKnown RBP25.39■■□□□ 1.66
CLN3-260ENST00000637578 THUMPD2Q9BTF0 503 aaKnown RBP25.39■■□□□ 1.66
CLN3-260ENST00000637578 PXDNLA1KZ92 1463 aa25.39■■□□□ 1.65
CLN3-260ENST00000637578 RIPK4P57078 832 aa25.39■■□□□ 1.65
CLN3-260ENST00000637578 NFIXQ14938 502 aa25.38■■□□□ 1.65
CLN3-260ENST00000637578 ADAMTS8Q9UP79 889 aa25.38■■□□□ 1.65
CLN3-260ENST00000637578 CHD4Q14839 1912 aa25.38■■□□□ 1.65
CLN3-260ENST00000637578 KIAA1551Q9HCM1 1747 aa25.36■■□□□ 1.65
CLN3-260ENST00000637578 WDR43Q15061 677 aaKnown RBP eCLIP25.36■■□□□ 1.65
CLN3-260ENST00000637578 RUNDC1Q96C34 613 aa25.35■■□□□ 1.65
CLN3-260ENST00000637578 EIF4A1P60842 406 aaKnown RBP25.35■■□□□ 1.65
CLN3-260ENST00000637578 A0A0G2JLW4 131 aa25.34■■□□□ 1.65
CLN3-260ENST00000637578 CCDC146Q8IYE0 955 aa25.34■■□□□ 1.65
CLN3-260ENST00000637578 TBC1D2BQ9UPU7 963 aa25.34■■□□□ 1.65
CLN3-260ENST00000637578 KDM3BQ7LBC6 1761 aa25.34■■□□□ 1.65
CLN3-260ENST00000637578 GIGYF1O75420 1035 aaPredicted RBP25.33■■□□□ 1.65
CLN3-260ENST00000637578 KCNA3P22001 575 aa25.33■■□□□ 1.65
CLN3-260ENST00000637578 LMOD3Q0VAK6 560 aa25.33■■□□□ 1.65
CLN3-260ENST00000637578 NBPF26B4DH59 902 aa25.32■■□□□ 1.64
CLN3-260ENST00000637578 DPEP1P16444 411 aa25.32■■□□□ 1.64
CLN3-260ENST00000637578 NBPF10Q6P3W6 841 aaKnown RBP25.32■■□□□ 1.64
CLN3-260ENST00000637578 NBPF15Q8N660 670 aa25.32■■□□□ 1.64
CLN3-260ENST00000637578 BABAM1Q9NWV8 329 aa25.32■■□□□ 1.64
CLN3-260ENST00000637578 CAMTA2O94983 1202 aa25.31■■□□□ 1.64
CLN3-260ENST00000637578 ZNF330Q9Y3S2 320 aaPredicted RBP25.31■■□□□ 1.64
CLN3-260ENST00000637578 NRXN2Q9P2S2 1712 aa25.3■■□□□ 1.64
CLN3-260ENST00000637578 SERPINB2P05120 415 aa25.3■■□□□ 1.64
CLN3-260ENST00000637578 PIP4K2AP48426 406 aaPredicted RBP25.3■■□□□ 1.64
CLN3-260ENST00000637578 ZNF784Q8NCA9 323 aaPredicted RBP25.3■■□□□ 1.64
CLN3-260ENST00000637578 RRP7AQ9Y3A4 280 aaKnown RBP25.3■■□□□ 1.64
CLN3-260ENST00000637578 TBC1D9BQ66K14 1250 aa25.29■■□□□ 1.64
CLN3-260ENST00000637578 NPM2Q86SE8 214 aaKnown RBP25.29■■□□□ 1.64
CLN3-260ENST00000637578 DZIP3Q86Y13 1208 aaKnown RBP25.29■■□□□ 1.64
CLN3-260ENST00000637578 WWC3Q9ULE0 1092 aa25.29■■□□□ 1.64
CLN3-260ENST00000637578 TRIM35Q9UPQ4 493 aa25.29■■□□□ 1.64
CLN3-260ENST00000637578 SCN7AQ01118 1682 aa25.29■■□□□ 1.64
CLN3-260ENST00000637578 N4BP2Q86UW6 1770 aaPredicted RBP25.29■■□□□ 1.64
CLN3-260ENST00000637578 RGL2O15211 777 aa25.27■■□□□ 1.64
CLN3-260ENST00000637578 TSPYL4Q9UJ04 414 aa25.27■■□□□ 1.64
CLN3-260ENST00000637578 AFDNP55196 1824 aaKnown RBP25.26■■□□□ 1.63
CLN3-260ENST00000637578 NEUROD2Q15784 382 aa25.26■■□□□ 1.63
CLN3-260ENST00000637578 CLEC4GQ6UXB4 293 aa25.26■■□□□ 1.63
CLN3-260ENST00000637578 BICDL1Q6ZP65 573 aa25.26■■□□□ 1.63
CLN3-260ENST00000637578 ANP32CO43423 234 aa25.25■■□□□ 1.63
CLN3-260ENST00000637578 PIM2Q9P1W9 311 aa25.25■■□□□ 1.63
CLN3-260ENST00000637578 LAMB4A4D0S4 1761 aa25.24■■□□□ 1.63
CLN3-260ENST00000637578 BCS1LQ9Y276 419 aa25.24■■□□□ 1.63
CLN3-260ENST00000637578 BRCA1P38398 1863 aaKnown RBP25.24■■□□□ 1.63
CLN3-260ENST00000637578 CHL1O00533 1208 aa25.23■■□□□ 1.63
CLN3-260ENST00000637578 CHRNA5P30532 468 aa25.22■■□□□ 1.63
CLN3-260ENST00000637578 CCDC184Q52MB2 194 aa25.22■■□□□ 1.63
CLN3-260ENST00000637578 CARMIL3Q8ND23 1372 aa25.22■■□□□ 1.63
CLN3-260ENST00000637578 BCORQ6W2J9 1755 aa25.22■■□□□ 1.63
CLN3-260ENST00000637578 SETDB2Q96T68 719 aa25.22■■□□□ 1.63
CLN3-260ENST00000637578 DALRD3Q5D0E6 543 aaKnown RBP25.19■■□□□ 1.62
CLN3-260ENST00000637578 PRR5LQ6MZQ0 368 aa25.19■■□□□ 1.62
CLN3-260ENST00000637578 ZNF652Q9Y2D9 606 aa25.19■■□□□ 1.62
CLN3-260ENST00000637578 ERBB4Q15303 1308 aa25.19■■□□□ 1.62
CLN3-260ENST00000637578 BRIP1Q9BX63 1249 aa25.18■■□□□ 1.62
CLN3-260ENST00000637578 ADCY9O60503 1353 aa25.18■■□□□ 1.62
CLN3-260ENST00000637578 APAF1O14727 1248 aa25.18■■□□□ 1.62
CLN3-260ENST00000637578 ERVV-1B6SEH8 477 aa25.17■■□□□ 1.62
CLN3-260ENST00000637578 DIEXFQ68CQ4 756 aaKnown RBP25.17■■□□□ 1.62
CLN3-260ENST00000637578 PDIA6Q15084 440 aa25.16■■□□□ 1.62
CLN3-260ENST00000637578 LRP10Q7Z4F1 713 aa25.16■■□□□ 1.62
CLN3-260ENST00000637578 HLFQ16534 295 aa25.15■■□□□ 1.62
CLN3-260ENST00000637578 CFAP44Q96MT7 982 aa25.15■■□□□ 1.62
CLN3-260ENST00000637578 PDZRN3Q9UPQ7 1066 aa25.15■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms