RNA–Protein interactions for RNA: ENST00000629667.2

PDLIM3-213, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 1,016 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-213ENST00000629667 SOS1Q07889 1333 aaPredicted RBP21.3■■□□□ 1
PDLIM3-213ENST00000629667 HTRA3P83110 453 aa21.3■■□□□ 1
PDLIM3-213ENST00000629667 LGR6Q9HBX8 967 aa21.3■■□□□ 1
PDLIM3-213ENST00000629667 KLRG1Q96E93 195 aa21.29■■□□□ 1
PDLIM3-213ENST00000629667 CYP19A1P11511 503 aaPredicted RBP21.28■■□□□ 1
PDLIM3-213ENST00000629667 SLC39A6Q13433 755 aa21.28■■□□□ 1
PDLIM3-213ENST00000629667 NARFQ9UHQ1 456 aa21.28■■□□□ 1
PDLIM3-213ENST00000629667 COL15A1P39059 1388 aa21.27■■□□□ 1
PDLIM3-213ENST00000629667 RNMTO43148 476 aaKnown RBP21.27■■□□□ 1
PDLIM3-213ENST00000629667 NFIXQ14938 502 aa21.27■■□□□ 1
PDLIM3-213ENST00000629667 DLEC1Q9Y238 1755 aa21.27■■□□□ 1
PDLIM3-213ENST00000629667 NRXN2Q9P2S2 1712 aa21.26■□□□□ 0.99
PDLIM3-213ENST00000629667 MRC1P22897 1456 aa21.26■□□□□ 0.99
PDLIM3-213ENST00000629667 CCDC88AQ3V6T2 1871 aa21.26■□□□□ 0.99
PDLIM3-213ENST00000629667 RASSF7Q02833 373 aa21.26■□□□□ 0.99
PDLIM3-213ENST00000629667 HMOX1P09601 288 aa21.25■□□□□ 0.99
PDLIM3-213ENST00000629667 SMC1BQ8NDV3 1235 aa21.25■□□□□ 0.99
PDLIM3-213ENST00000629667 ZBTB1Q9Y2K1 713 aa21.25■□□□□ 0.99
PDLIM3-213ENST00000629667 ZC3H4Q9UPT8 1303 aaKnown RBP21.25■□□□□ 0.99
PDLIM3-213ENST00000629667 SERPINB2P05120 415 aa21.24■□□□□ 0.99
PDLIM3-213ENST00000629667 LMNB1P20700 586 aa21.23■□□□□ 0.99
PDLIM3-213ENST00000629667 TTLL6Q8N841 843 aa21.23■□□□□ 0.99
PDLIM3-213ENST00000629667 JMYQ8N9B5 988 aa21.23■□□□□ 0.99
PDLIM3-213ENST00000629667 VSIG10Q8N0Z9 540 aa21.22■□□□□ 0.99
PDLIM3-213ENST00000629667 BCL2L12Q9HB09 334 aa21.22■□□□□ 0.99
PDLIM3-213ENST00000629667 UBR2Q8IWV8 1755 aa21.21■□□□□ 0.99
PDLIM3-213ENST00000629667 CANXP27824 592 aaKnown RBP21.21■□□□□ 0.99
PDLIM3-213ENST00000629667 MTHFSDQ2M296 383 aaKnown RBP21.21■□□□□ 0.99
PDLIM3-213ENST00000629667 AMER1Q5JTC6 1135 aaPredicted RBP21.21■□□□□ 0.99
PDLIM3-213ENST00000629667 C2CD5Q86YS7 1000 aa21.21■□□□□ 0.99
PDLIM3-213ENST00000629667 TIAM2Q8IVF5 1701 aa21.21■□□□□ 0.99
PDLIM3-213ENST00000629667 GLTPD2A6NH11 291 aa21.2■□□□□ 0.98
PDLIM3-213ENST00000629667 H0YIN7 160 aa21.2■□□□□ 0.98
PDLIM3-213ENST00000629667 VEGFAP15692 232 aaPredicted RBP21.2■□□□□ 0.98
PDLIM3-213ENST00000629667 BICDL1Q6ZP65 573 aa21.19■□□□□ 0.98
PDLIM3-213ENST00000629667 TTC5Q8N0Z6 440 aa21.19■□□□□ 0.98
PDLIM3-213ENST00000629667 PCNTO95613 3336 aa21.19■□□□□ 0.98
PDLIM3-213ENST00000629667 DIAPH1O60610 1272 aaKnown RBP21.18■□□□□ 0.98
PDLIM3-213ENST00000629667 STARD3NLO95772 234 aa21.18■□□□□ 0.98
PDLIM3-213ENST00000629667 A0A087WZG4 1122 aa21.17■□□□□ 0.98
PDLIM3-213ENST00000629667 PRELPP51888 382 aa21.17■□□□□ 0.98
PDLIM3-213ENST00000629667 COL13A1Q5TAT6 717 aaPredicted RBP21.17■□□□□ 0.98
PDLIM3-213ENST00000629667 CARMIL3Q8ND23 1372 aa21.17■□□□□ 0.98
PDLIM3-213ENST00000629667 EIF5P55010 431 aaKnown RBP21.15■□□□□ 0.98
PDLIM3-213ENST00000629667 ANKRD31Q8N7Z5 1873 aa21.15■□□□□ 0.98
PDLIM3-213ENST00000629667 NFKBIEO00221 500 aa21.14■□□□□ 0.97
PDLIM3-213ENST00000629667 DPY19L2Q6NUT2 758 aa21.14■□□□□ 0.97
PDLIM3-213ENST00000629667 ZNF622Q969S3 477 aaKnown RBP eCLIP21.14■□□□□ 0.97
PDLIM3-213ENST00000629667 DICER1Q9UPY3 1922 aaKnown RBP21.14■□□□□ 0.97
PDLIM3-213ENST00000629667 TEFQ10587 303 aa21.13■□□□□ 0.97
PDLIM3-213ENST00000629667 TBC1D9BQ66K14 1250 aa21.13■□□□□ 0.97
PDLIM3-213ENST00000629667 PDZRN3Q9UPQ7 1066 aa21.13■□□□□ 0.97
PDLIM3-213ENST00000629667 ZNF330Q9Y3S2 320 aaPredicted RBP21.13■□□□□ 0.97
PDLIM3-213ENST00000629667 SCN7AQ01118 1682 aa21.12■□□□□ 0.97
PDLIM3-213ENST00000629667 PDE6BP35913 854 aa21.12■□□□□ 0.97
PDLIM3-213ENST00000629667 CC2D1BQ5T0F9 858 aaKnown RBP21.12■□□□□ 0.97
PDLIM3-213ENST00000629667 TEX13AQ9BXU3 409 aaPredicted RBP21.12■□□□□ 0.97
PDLIM3-213ENST00000629667 FER1L6Q2WGJ9 1857 aa21.11■□□□□ 0.97
PDLIM3-213ENST00000629667 KIF7Q2M1P5 1343 aa21.11■□□□□ 0.97
PDLIM3-213ENST00000629667 ZNF790Q6PG37 636 aa21.11■□□□□ 0.97
PDLIM3-213ENST00000629667 ZNF496Q96IT1 587 aaPredicted RBP21.11■□□□□ 0.97
PDLIM3-213ENST00000629667 BRIP1Q9BX63 1249 aa21.11■□□□□ 0.97
PDLIM3-213ENST00000629667 ZNF219Q9P2Y4 722 aaPredicted RBP21.11■□□□□ 0.97
PDLIM3-213ENST00000629667 TBC1D2BQ9UPU7 963 aa21.11■□□□□ 0.97
PDLIM3-213ENST00000629667 CACNA1SQ13698 1873 aa21.11■□□□□ 0.97
PDLIM3-213ENST00000629667 HEG1Q9ULI3 1381 aa21.1■□□□□ 0.97
PDLIM3-213ENST00000629667 SIPA1L3O60292 1781 aaPredicted RBP21.1■□□□□ 0.97
PDLIM3-213ENST00000629667 COL11A2P13942 1736 aaPredicted RBP21.1■□□□□ 0.97
PDLIM3-213ENST00000629667 C21orf2O43822 256 aa21.1■□□□□ 0.97
PDLIM3-213ENST00000629667 ERFEQ4G0M1 354 aa21.1■□□□□ 0.97
PDLIM3-213ENST00000629667 NPM2Q86SE8 214 aaKnown RBP21.1■□□□□ 0.97
PDLIM3-213ENST00000629667 TNS4Q8IZW8 715 aa21.1■□□□□ 0.97
PDLIM3-213ENST00000629667 CCER1Q8TC90 406 aaPredicted RBP21.1■□□□□ 0.97
PDLIM3-213ENST00000629667 GNAT3A8MTJ3 354 aa21.09■□□□□ 0.97
PDLIM3-213ENST00000629667 U2SURPO15042 1029 aaKnown RBP21.09■□□□□ 0.97
PDLIM3-213ENST00000629667 NPHP1O15259 732 aa21.09■□□□□ 0.97
PDLIM3-213ENST00000629667 CAPN15O75808 1086 aa21.09■□□□□ 0.97
PDLIM3-213ENST00000629667 PRR5LQ6MZQ0 368 aa21.09■□□□□ 0.97
PDLIM3-213ENST00000629667 CCDC24Q8N4L8 307 aa21.09■□□□□ 0.97
PDLIM3-213ENST00000629667 GAS2L2Q8NHY3 880 aa21.09■□□□□ 0.97
PDLIM3-213ENST00000629667 PER1O15534 1290 aaPredicted RBP21.08■□□□□ 0.97
PDLIM3-213ENST00000629667 IL6STP40189 918 aaPredicted RBP21.08■□□□□ 0.97
PDLIM3-213ENST00000629667 IL17REQ8NFR9 667 aa21.08■□□□□ 0.97
PDLIM3-213ENST00000629667 POTECB2RU33 542 aa21.07■□□□□ 0.96
PDLIM3-213ENST00000629667 SETDB2Q96T68 719 aa21.07■□□□□ 0.96
PDLIM3-213ENST00000629667 HSPA1AP0DMV8 641 aaKnown RBP21.06■□□□□ 0.96
PDLIM3-213ENST00000629667 HSPA1BP0DMV9 641 aaKnown RBP21.06■□□□□ 0.96
PDLIM3-213ENST00000629667 FMNL2Q96PY5 1086 aa21.06■□□□□ 0.96
PDLIM3-213ENST00000629667 CNGB1Q14028 1251 aaPredicted RBP21.05■□□□□ 0.96
PDLIM3-213ENST00000629667 CNBD1Q8NA66 436 aa21.05■□□□□ 0.96
PDLIM3-213ENST00000629667 CNKSR1Q969H4 720 aa21.05■□□□□ 0.96
PDLIM3-213ENST00000629667 TAOK3Q9H2K8 898 aa21.05■□□□□ 0.96
PDLIM3-213ENST00000629667 SLX4Q8IY92 1834 aa21.05■□□□□ 0.96
PDLIM3-213ENST00000629667 A1BGP04217 495 aa21.04■□□□□ 0.96
PDLIM3-213ENST00000629667 ST5P78524 1137 aa21.04■□□□□ 0.96
PDLIM3-213ENST00000629667 COL3A1P02461 1466 aaPredicted RBP21.04■□□□□ 0.96
PDLIM3-213ENST00000629667 LTBP3Q9NS15 1303 aa21.04■□□□□ 0.96
PDLIM3-213ENST00000629667 BCORQ6W2J9 1755 aa21.03■□□□□ 0.96
PDLIM3-213ENST00000629667 ARFGEF2Q9Y6D5 1785 aa21.03■□□□□ 0.96
PDLIM3-213ENST00000629667 CAMTA2O94983 1202 aa21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms