RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 LAS1LQ9Y4W2 734 aaKnown RBP26.5■■□□□ 1.83
PTCD3-220ENST00000627371 COL24A1Q17RW2 1714 aa26.5■■□□□ 1.83
PTCD3-220ENST00000627371 LRP5O75197 1615 aa26.5■■□□□ 1.83
PTCD3-220ENST00000627371 ZNF853P0CG23 659 aa26.49■■□□□ 1.83
PTCD3-220ENST00000627371 COL23A1Q86Y22 540 aaPredicted RBP26.49■■□□□ 1.83
PTCD3-220ENST00000627371 RTCBQ9Y3I0 505 aaKnown RBP26.49■■□□□ 1.83
PTCD3-220ENST00000627371 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.48■■□□□ 1.83
PTCD3-220ENST00000627371 RPS6KA4O75676 772 aa26.48■■□□□ 1.83
PTCD3-220ENST00000627371 PHF14O94880 888 aa26.48■■□□□ 1.83
PTCD3-220ENST00000627371 SALL2Q9Y467 1007 aaPredicted RBP26.48■■□□□ 1.83
PTCD3-220ENST00000627371 PRAMEF22A3QJZ6 481 aa26.47■■□□□ 1.83
PTCD3-220ENST00000627371 GNAI1P63096 354 aa26.47■■□□□ 1.83
PTCD3-220ENST00000627371 GIGYF1O75420 1035 aaPredicted RBP26.46■■□□□ 1.83
PTCD3-220ENST00000627371 ADRA2BP18089 450 aa26.46■■□□□ 1.83
PTCD3-220ENST00000627371 SMIM5Q71RC9 77 aa26.46■■□□□ 1.83
PTCD3-220ENST00000627371 SLC16A10Q8TF71 515 aa26.46■■□□□ 1.83
PTCD3-220ENST00000627371 ZBTB1Q9Y2K1 713 aa26.46■■□□□ 1.83
PTCD3-220ENST00000627371 USP16Q9Y5T5 823 aa26.46■■□□□ 1.83
PTCD3-220ENST00000627371 MBIPQ9NS73 344 aa26.45■■□□□ 1.82
PTCD3-220ENST00000627371 SOS1Q07889 1333 aaPredicted RBP26.44■■□□□ 1.82
PTCD3-220ENST00000627371 IL16Q14005 1332 aa26.44■■□□□ 1.82
PTCD3-220ENST00000627371 MTFR1LQ9H019 292 aa26.44■■□□□ 1.82
PTCD3-220ENST00000627371 MSH5O43196 834 aa26.43■■□□□ 1.82
PTCD3-220ENST00000627371 ZBTB7AO95365 584 aa26.43■■□□□ 1.82
PTCD3-220ENST00000627371 TRAPPC3LQ5T215 181 aa26.43■■□□□ 1.82
PTCD3-220ENST00000627371 WDR63Q8IWG1 891 aa26.43■■□□□ 1.82
PTCD3-220ENST00000627371 SRCAPQ6ZRS2 3230 aa26.43■■□□□ 1.82
PTCD3-220ENST00000627371 A1BGP04217 495 aa26.41■■□□□ 1.82
PTCD3-220ENST00000627371 COL15A1P39059 1388 aa26.41■■□□□ 1.82
PTCD3-220ENST00000627371 CANXP27824 592 aaKnown RBP26.4■■□□□ 1.82
PTCD3-220ENST00000627371 ARHGEF1Q92888 912 aaKnown RBP26.4■■□□□ 1.82
PTCD3-220ENST00000627371 SPON1Q9HCB6 807 aa26.4■■□□□ 1.82
PTCD3-220ENST00000627371 ZNF521Q96K83 1311 aa26.39■■□□□ 1.82
PTCD3-220ENST00000627371 IL6STP40189 918 aaPredicted RBP26.38■■□□□ 1.81
PTCD3-220ENST00000627371 EIF5P55010 431 aaKnown RBP26.38■■□□□ 1.81
PTCD3-220ENST00000627371 KRT24Q2M2I5 525 aa26.38■■□□□ 1.81
PTCD3-220ENST00000627371 RFC4P35249 363 aa26.37■■□□□ 1.81
PTCD3-220ENST00000627371 ATF5Q9Y2D1 282 aaPredicted RBP26.37■■□□□ 1.81
PTCD3-220ENST00000627371 SCN7AQ01118 1682 aa26.37■■□□□ 1.81
PTCD3-220ENST00000627371 HOXB7P09629 217 aa26.36■■□□□ 1.81
PTCD3-220ENST00000627371 BCORQ6W2J9 1755 aa26.35■■□□□ 1.81
PTCD3-220ENST00000627371 TSR2Q969E8 191 aaKnown RBP26.35■■□□□ 1.81
PTCD3-220ENST00000627371 USP42Q9H9J4 1324 aaKnown RBP26.35■■□□□ 1.81
PTCD3-220ENST00000627371 NBPF26B4DH59 902 aa26.34■■□□□ 1.81
PTCD3-220ENST00000627371 PTGER2P43116 358 aa26.34■■□□□ 1.81
PTCD3-220ENST00000627371 PIP4K2AP48426 406 aaPredicted RBP26.34■■□□□ 1.81
PTCD3-220ENST00000627371 NBPF10Q6P3W6 841 aaKnown RBP26.34■■□□□ 1.81
PTCD3-220ENST00000627371 NBPF15Q8N660 670 aa26.34■■□□□ 1.81
PTCD3-220ENST00000627371 SGIP1Q9BQI5 828 aa26.34■■□□□ 1.81
PTCD3-220ENST00000627371 ERBB4Q15303 1308 aa26.34■■□□□ 1.81
PTCD3-220ENST00000627371 A0A087WZG4 1122 aa26.33■■□□□ 1.81
PTCD3-220ENST00000627371 FANCIQ9NVI1 1328 aa26.33■■□□□ 1.81
PTCD3-220ENST00000627371 EIF2S2P20042 333 aaKnown RBP26.32■■□□□ 1.8
PTCD3-220ENST00000627371 DUSP27Q5VZP5 1158 aa26.32■■□□□ 1.8
PTCD3-220ENST00000627371 MSL1Q68DK7 614 aa26.32■■□□□ 1.8
PTCD3-220ENST00000627371 ZNF330Q9Y3S2 320 aaPredicted RBP26.32■■□□□ 1.8
PTCD3-220ENST00000627371 GYS1P13807 737 aa26.31■■□□□ 1.8
PTCD3-220ENST00000627371 NPM2Q86SE8 214 aaKnown RBP26.31■■□□□ 1.8
PTCD3-220ENST00000627371 SPINK5Q9NQ38 1064 aaPredicted RBP26.31■■□□□ 1.8
PTCD3-220ENST00000627371 SRP68Q9UHB9 627 aaKnown RBP26.31■■□□□ 1.8
PTCD3-220ENST00000627371 NARFQ9UHQ1 456 aa26.31■■□□□ 1.8
PTCD3-220ENST00000627371 ZPR1O75312 459 aa26.3■■□□□ 1.8
PTCD3-220ENST00000627371 POLD1P28340 1107 aa26.29■■□□□ 1.8
PTCD3-220ENST00000627371 C8orf58Q8NAV2 365 aa26.29■■□□□ 1.8
PTCD3-220ENST00000627371 MYH16Q9H6N6 1097 aa26.29■■□□□ 1.8
PTCD3-220ENST00000627371 GOLGA2Q08379 1002 aa26.28■■□□□ 1.8
PTCD3-220ENST00000627371 HDGFL1Q5TGJ6 251 aa26.28■■□□□ 1.8
PTCD3-220ENST00000627371 USPL1Q5W0Q7 1092 aa26.28■■□□□ 1.8
PTCD3-220ENST00000627371 NLGN1Q8N2Q7 840 aa26.27■■□□□ 1.8
PTCD3-220ENST00000627371 ELL2O00472 640 aaPredicted RBP26.26■■□□□ 1.79
PTCD3-220ENST00000627371 PDIA6Q15084 440 aa26.26■■□□□ 1.79
PTCD3-220ENST00000627371 DZIP3Q86Y13 1208 aaKnown RBP26.26■■□□□ 1.79
PTCD3-220ENST00000627371 NECTIN2Q92692 538 aa26.26■■□□□ 1.79
PTCD3-220ENST00000627371 TBC1D2BQ9UPU7 963 aa26.26■■□□□ 1.79
PTCD3-220ENST00000627371 MYL6BP14649 208 aa26.25■■□□□ 1.79
PTCD3-220ENST00000627371 TSPYL6Q8N831 410 aa26.25■■□□□ 1.79
PTCD3-220ENST00000627371 CACNA1FO60840 1977 aa26.25■■□□□ 1.79
PTCD3-220ENST00000627371 NUP98P52948 1817 aa26.24■■□□□ 1.79
PTCD3-220ENST00000627371 FKBP8Q14318 412 aa26.24■■□□□ 1.79
PTCD3-220ENST00000627371 LRP10Q7Z4F1 713 aa26.24■■□□□ 1.79
PTCD3-220ENST00000627371 BCL2L12Q9HB09 334 aa26.24■■□□□ 1.79
PTCD3-220ENST00000627371 E9PSI1 815 aa26.23■■□□□ 1.79
PTCD3-220ENST00000627371 CAMTA2O94983 1202 aa26.23■■□□□ 1.79
PTCD3-220ENST00000627371 HNRNPUQ00839 825 aaKnown RBP eCLIP26.23■■□□□ 1.79
PTCD3-220ENST00000627371 PROSER3Q2NL68 480 aa26.23■■□□□ 1.79
PTCD3-220ENST00000627371 TWISTNBQ3B726 338 aaPredicted RBP26.23■■□□□ 1.79
PTCD3-220ENST00000627371 ARXQ96QS3 562 aa26.23■■□□□ 1.79
PTCD3-220ENST00000627371 DDX21Q9NR30 783 aaKnown RBP eCLIP26.23■■□□□ 1.79
PTCD3-220ENST00000627371 CHPF2Q9P2E5 772 aa26.23■■□□□ 1.79
PTCD3-220ENST00000627371 PPP1R1BQ9UD71 204 aaPredicted RBP26.23■■□□□ 1.79
PTCD3-220ENST00000627371 CHMP4AQ9BY43 222 aa26.22■■□□□ 1.79
PTCD3-220ENST00000627371 ANXA1P04083 346 aa26.21■■□□□ 1.79
PTCD3-220ENST00000627371 MMP10P09238 476 aa26.21■■□□□ 1.79
PTCD3-220ENST00000627371 EXOSC9Q06265 439 aaKnown RBP26.21■■□□□ 1.79
PTCD3-220ENST00000627371 DBF4Q9UBU7 674 aaPredicted RBP26.21■■□□□ 1.79
PTCD3-220ENST00000627371 AFDNP55196 1824 aaKnown RBP26.21■■□□□ 1.79
PTCD3-220ENST00000627371 SLFN5Q08AF3 891 aa26.2■■□□□ 1.78
PTCD3-220ENST00000627371 RGL2O15211 777 aa26.19■■□□□ 1.78
PTCD3-220ENST00000627371 CCDC30Q5VVM6 783 aa26.19■■□□□ 1.78
PTCD3-220ENST00000627371 NRXN2Q9P2S2 1712 aa26.19■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms