RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 PANK3Q9H999 370 aa10.69□□□□□ -0.7
CLK1-215ENST00000621181 KCPQ6ZWJ8 1503 aa10.68□□□□□ -0.7
CLK1-215ENST00000621181 ZPR1O75312 459 aa10.68□□□□□ -0.7
CLK1-215ENST00000621181 DDR1Q08345 913 aa10.68□□□□□ -0.7
CLK1-215ENST00000621181 SULT6B1Q6IMI4 303 aa10.68□□□□□ -0.7
CLK1-215ENST00000621181 MORC1Q86VD1 984 aa10.68□□□□□ -0.7
CLK1-215ENST00000621181 WDR90Q96KV7 1748 aa10.68□□□□□ -0.7
CLK1-215ENST00000621181 CHRNA5P30532 468 aa10.68□□□□□ -0.7
CLK1-215ENST00000621181 HTRA3P83110 453 aa10.68□□□□□ -0.7
CLK1-215ENST00000621181 FSTL1Q12841 308 aa10.68□□□□□ -0.7
CLK1-215ENST00000621181 POLRMTO00411 1230 aaKnown RBP10.67□□□□□ -0.7
CLK1-215ENST00000621181 EIF4G2P78344 907 aaKnown RBP eCLIP10.66□□□□□ -0.7
CLK1-215ENST00000621181 USPL1Q5W0Q7 1092 aa10.66□□□□□ -0.7
CLK1-215ENST00000621181 KLRG1Q96E93 195 aa10.66□□□□□ -0.7
CLK1-215ENST00000621181 RRAGCQ9HB90 399 aa10.66□□□□□ -0.7
CLK1-215ENST00000621181 INTS5Q6P9B9 1019 aaKnown RBP10.65□□□□□ -0.7
CLK1-215ENST00000621181 TJP1Q07157 1748 aa10.65□□□□□ -0.7
CLK1-215ENST00000621181 SCN11AQ9UI33 1791 aa10.65□□□□□ -0.7
CLK1-215ENST00000621181 AKAP4Q5JQC9 854 aa10.65□□□□□ -0.71
CLK1-215ENST00000621181 DNAJC10Q8IXB1 793 aa10.65□□□□□ -0.71
CLK1-215ENST00000621181 SLC52A2Q9HAB3 445 aa10.65□□□□□ -0.71
CLK1-215ENST00000621181 SBF1O95248 1867 aa10.65□□□□□ -0.71
CLK1-215ENST00000621181 TNRC6CQ9HCJ0 1690 aaKnown RBP10.64□□□□□ -0.71
CLK1-215ENST00000621181 TM4SF1P30408 202 aa10.64□□□□□ -0.71
CLK1-215ENST00000621181 RASSF7Q02833 373 aa10.64□□□□□ -0.71
CLK1-215ENST00000621181 SMC1BQ8NDV3 1235 aa10.64□□□□□ -0.71
CLK1-215ENST00000621181 KNSTRNQ9Y448 316 aa10.64□□□□□ -0.71
CLK1-215ENST00000621181 SOS1Q07889 1333 aaPredicted RBP10.64□□□□□ -0.71
CLK1-215ENST00000621181 HSPA5P11021 654 aaKnown RBP10.63□□□□□ -0.71
CLK1-215ENST00000621181 IL13P35225 146 aa10.63□□□□□ -0.71
CLK1-215ENST00000621181 SLC39A6Q13433 755 aa10.63□□□□□ -0.71
CLK1-215ENST00000621181 NFIXQ14938 502 aa10.63□□□□□ -0.71
CLK1-215ENST00000621181 COL15A1P39059 1388 aa10.63□□□□□ -0.71
CLK1-215ENST00000621181 CLSPNQ9HAW4 1339 aa10.63□□□□□ -0.71
CLK1-215ENST00000621181 ZC3H4Q9UPT8 1303 aaKnown RBP10.63□□□□□ -0.71
CLK1-215ENST00000621181 COL13A1Q5TAT6 717 aaPredicted RBP10.63□□□□□ -0.71
CLK1-215ENST00000621181 JMYQ8N9B5 988 aa10.63□□□□□ -0.71
CLK1-215ENST00000621181 LGR6Q9HBX8 967 aa10.63□□□□□ -0.71
CLK1-215ENST00000621181 NARFQ9UHQ1 456 aa10.63□□□□□ -0.71
CLK1-215ENST00000621181 ADAMTS7Q9UKP4 1686 aa10.63□□□□□ -0.71
CLK1-215ENST00000621181 CYP19A1P11511 503 aaPredicted RBP10.62□□□□□ -0.71
CLK1-215ENST00000621181 LMNB1P20700 586 aa10.62□□□□□ -0.71
CLK1-215ENST00000621181 ZBTB1Q9Y2K1 713 aa10.62□□□□□ -0.71
CLK1-215ENST00000621181 RNMTO43148 476 aaKnown RBP10.61□□□□□ -0.71
CLK1-215ENST00000621181 SERPINB2P05120 415 aa10.61□□□□□ -0.71
CLK1-215ENST00000621181 HMOX1P09601 288 aa10.61□□□□□ -0.71
CLK1-215ENST00000621181 VEGFAP15692 232 aaPredicted RBP10.61□□□□□ -0.71
CLK1-215ENST00000621181 TTLL6Q8N841 843 aa10.61□□□□□ -0.71
CLK1-215ENST00000621181 AFDNP55196 1824 aaKnown RBP10.61□□□□□ -0.71
CLK1-215ENST00000621181 GLTPD2A6NH11 291 aa10.61□□□□□ -0.71
CLK1-215ENST00000621181 MRC1P22897 1456 aa10.6□□□□□ -0.71
CLK1-215ENST00000621181 H0YIN7 160 aa10.6□□□□□ -0.71
CLK1-215ENST00000621181 CANXP27824 592 aaKnown RBP10.6□□□□□ -0.71
CLK1-215ENST00000621181 BICDL1Q6ZP65 573 aa10.6□□□□□ -0.71
CLK1-215ENST00000621181 C2CD5Q86YS7 1000 aa10.6□□□□□ -0.71
CLK1-215ENST00000621181 TTC5Q8N0Z6 440 aa10.59□□□□□ -0.71
CLK1-215ENST00000621181 VSIG10Q8N0Z9 540 aa10.59□□□□□ -0.71
CLK1-215ENST00000621181 VIRMAQ69YN4 1812 aaKnown RBP10.59□□□□□ -0.71
CLK1-215ENST00000621181 NRXN2Q9P2S2 1712 aa10.59□□□□□ -0.71
CLK1-215ENST00000621181 STARD3NLO95772 234 aa10.58□□□□□ -0.72
CLK1-215ENST00000621181 DPY19L2Q6NUT2 758 aa10.58□□□□□ -0.72
CLK1-215ENST00000621181 TNS4Q8IZW8 715 aa10.58□□□□□ -0.72
CLK1-215ENST00000621181 BCL2L12Q9HB09 334 aa10.58□□□□□ -0.72
CLK1-215ENST00000621181 ZNF330Q9Y3S2 320 aaPredicted RBP10.58□□□□□ -0.72
CLK1-215ENST00000621181 DLEC1Q9Y238 1755 aa10.58□□□□□ -0.72
CLK1-215ENST00000621181 CCDC88AQ3V6T2 1871 aa10.58□□□□□ -0.72
CLK1-215ENST00000621181 MTHFSDQ2M296 383 aaKnown RBP10.58□□□□□ -0.72
CLK1-215ENST00000621181 AMER1Q5JTC6 1135 aaPredicted RBP10.58□□□□□ -0.72
CLK1-215ENST00000621181 ZNF622Q969S3 477 aaKnown RBP eCLIP10.58□□□□□ -0.728e-9■■■■□ 20.1
CLK1-215ENST00000621181 CARMIL3Q8ND23 1372 aa10.57□□□□□ -0.72
CLK1-215ENST00000621181 NPHP1O15259 732 aa10.57□□□□□ -0.72
CLK1-215ENST00000621181 PRELPP51888 382 aa10.57□□□□□ -0.72
CLK1-215ENST00000621181 NPM2Q86SE8 214 aaKnown RBP10.57□□□□□ -0.72
CLK1-215ENST00000621181 TIAM2Q8IVF5 1701 aa10.57□□□□□ -0.72
CLK1-215ENST00000621181 A0A087WZG4 1122 aa10.56□□□□□ -0.72
CLK1-215ENST00000621181 NFKBIEO00221 500 aa10.56□□□□□ -0.72
CLK1-215ENST00000621181 DIAPH1O60610 1272 aaKnown RBP10.56□□□□□ -0.72
CLK1-215ENST00000621181 ERFEQ4G0M1 354 aa10.56□□□□□ -0.72
CLK1-215ENST00000621181 HSPA1AP0DMV8 641 aaKnown RBP10.56□□□□□ -0.72
CLK1-215ENST00000621181 HSPA1BP0DMV9 641 aaKnown RBP10.56□□□□□ -0.72
CLK1-215ENST00000621181 PDE6BP35913 854 aa10.56□□□□□ -0.72
CLK1-215ENST00000621181 EIF5P55010 431 aaKnown RBP10.56□□□□□ -0.72
CLK1-215ENST00000621181 TBC1D9BQ66K14 1250 aa10.56□□□□□ -0.72
CLK1-215ENST00000621181 C21orf2O43822 256 aa10.55□□□□□ -0.72
CLK1-215ENST00000621181 TEFQ10587 303 aa10.55□□□□□ -0.72
CLK1-215ENST00000621181 DIEXFQ68CQ4 756 aaKnown RBP10.55□□□□□ -0.72
CLK1-215ENST00000621181 ZNF496Q96IT1 587 aaPredicted RBP10.55□□□□□ -0.72
CLK1-215ENST00000621181 BRIP1Q9BX63 1249 aa10.55□□□□□ -0.72
CLK1-215ENST00000621181 PDZRN3Q9UPQ7 1066 aa10.55□□□□□ -0.72
CLK1-215ENST00000621181 TBC1D2BQ9UPU7 963 aa10.55□□□□□ -0.72
CLK1-215ENST00000621181 UBR2Q8IWV8 1755 aa10.55□□□□□ -0.72
CLK1-215ENST00000621181 ZNF790Q6PG37 636 aa10.54□□□□□ -0.72
CLK1-215ENST00000621181 CCDC24Q8N4L8 307 aa10.54□□□□□ -0.72
CLK1-215ENST00000621181 TEX13AQ9BXU3 409 aaPredicted RBP10.54□□□□□ -0.72
CLK1-215ENST00000621181 CC2D1BQ5T0F9 858 aaKnown RBP10.54□□□□□ -0.72
CLK1-215ENST00000621181 CNBD1Q8NA66 436 aa10.54□□□□□ -0.72
CLK1-215ENST00000621181 TAOK3Q9H2K8 898 aa10.54□□□□□ -0.72
CLK1-215ENST00000621181 HEG1Q9ULI3 1381 aa10.53□□□□□ -0.72
CLK1-215ENST00000621181 GNAT3A8MTJ3 354 aa10.53□□□□□ -0.72
CLK1-215ENST00000621181 POTECB2RU33 542 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms