RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 G3BP1Q13283 466 aaKnown RBP eCLIP5.85□□□□□ -1.47
VPS13D-214ENST00000620676 HDGFL2Q7Z4V5 671 aaPredicted RBP5.85□□□□□ -1.47
VPS13D-214ENST00000620676 EZRP15311 586 aaKnown RBP5.85□□□□□ -1.47
VPS13D-214ENST00000620676 SEPT14Q6ZU15 432 aa5.85□□□□□ -1.47
VPS13D-214ENST00000620676 NEUROD6Q96NK8 337 aa5.85□□□□□ -1.47
VPS13D-214ENST00000620676 JADE2Q9NQC1 790 aa5.85□□□□□ -1.47
VPS13D-214ENST00000620676 EXOC6BQ9Y2D4 811 aa5.85□□□□□ -1.47
VPS13D-214ENST00000620676 CCDC160A6NGH7 325 aa5.85□□□□□ -1.47
VPS13D-214ENST00000620676 AIMP1Q12904 312 aaKnown RBP5.85□□□□□ -1.47
VPS13D-214ENST00000620676 ZRSR2Q15696 482 aaKnown RBP5.85□□□□□ -1.47
VPS13D-214ENST00000620676 TEX2Q8IWB9 1127 aa5.85□□□□□ -1.47
VPS13D-214ENST00000620676 ZCCHC17Q9NP64 241 aaKnown RBP5.85□□□□□ -1.47
VPS13D-214ENST00000620676 IRAK4Q9NWZ3 460 aa5.85□□□□□ -1.47
VPS13D-214ENST00000620676 IFFO1Q0D2I5 559 aa5.85□□□□□ -1.47
VPS13D-214ENST00000620676 TCEANC2Q96MN5 208 aa5.85□□□□□ -1.47
VPS13D-214ENST00000620676 ESF1Q9H501 851 aaKnown RBP5.85□□□□□ -1.47
VPS13D-214ENST00000620676 ERLIN2O94905 339 aa5.85□□□□□ -1.47
VPS13D-214ENST00000620676 FILIP1LQ4L180 1135 aa5.85□□□□□ -1.47
VPS13D-214ENST00000620676 ZFYVE27Q5T4F4 411 aa5.85□□□□□ -1.47
VPS13D-214ENST00000620676 SMC5Q8IY18 1101 aa5.85□□□□□ -1.47
VPS13D-214ENST00000620676 STX1AQ16623 288 aa5.85□□□□□ -1.47
VPS13D-214ENST00000620676 SAMM50Q9Y512 469 aa5.85□□□□□ -1.47
VPS13D-214ENST00000620676 CABP2Q9NPB3 220 aa5.85□□□□□ -1.47
VPS13D-214ENST00000620676 POLR3DP05423 398 aaPredicted RBP5.84□□□□□ -1.47
VPS13D-214ENST00000620676 RGS22Q8NE09 1264 aa5.84□□□□□ -1.47
VPS13D-214ENST00000620676 API5Q9BZZ5 524 aaKnown RBP5.84□□□□□ -1.47
VPS13D-214ENST00000620676 CARMIL1Q5VZK9 1371 aa5.84□□□□□ -1.47
VPS13D-214ENST00000620676 UBE2HP62256 183 aa5.84□□□□□ -1.47
VPS13D-214ENST00000620676 TERF2IPQ9NYB0 399 aa5.84□□□□□ -1.47
VPS13D-214ENST00000620676 MAGEC2Q9UBF1 373 aaPredicted RBP5.84□□□□□ -1.47
VPS13D-214ENST00000620676 SPECC1Q5M775 1068 aa5.84□□□□□ -1.47
VPS13D-214ENST00000620676 DACT1Q9NYF0 836 aa5.84□□□□□ -1.47
VPS13D-214ENST00000620676 TRIM27P14373 513 aa5.84□□□□□ -1.47
VPS13D-214ENST00000620676 HDXQ7Z353 690 aa5.84□□□□□ -1.47
VPS13D-214ENST00000620676 ANKRD18AQ8IVF6 992 aa5.84□□□□□ -1.47
VPS13D-214ENST00000620676 OTUD7AQ8TE49 926 aaPredicted RBP5.84□□□□□ -1.47
VPS13D-214ENST00000620676 DIAPH1O60610 1272 aaKnown RBP5.84□□□□□ -1.47
VPS13D-214ENST00000620676 E2F5Q15329 346 aa5.84□□□□□ -1.47
VPS13D-214ENST00000620676 MAP9Q49MG5 647 aa5.84□□□□□ -1.47
VPS13D-214ENST00000620676 FNBP4Q8N3X1 1017 aaPredicted RBP5.84□□□□□ -1.47
VPS13D-214ENST00000620676 NUP88Q99567 741 aaPredicted RBP5.84□□□□□ -1.48
VPS13D-214ENST00000620676 ZNHIT6Q9NWK9 470 aaKnown RBP5.84□□□□□ -1.48
VPS13D-214ENST00000620676 CBFA2T2O43439 604 aa5.84□□□□□ -1.48
VPS13D-214ENST00000620676 RAD21O60216 631 aa5.84□□□□□ -1.48
VPS13D-214ENST00000620676 HLTFQ14527 1009 aaKnown RBP eCLIP5.84□□□□□ -1.482e-6■■■■□ 24.2
VPS13D-214ENST00000620676 CARD6Q9BX69 1037 aa5.84□□□□□ -1.48
VPS13D-214ENST00000620676 EIF4G1Q04637 1599 aaKnown RBP5.84□□□□□ -1.48
VPS13D-214ENST00000620676 KIF27Q86VH2 1401 aa5.83□□□□□ -1.48
VPS13D-214ENST00000620676 ZC3H6P61129 1189 aaKnown RBP5.83□□□□□ -1.48
VPS13D-214ENST00000620676 CNTROBQ8N137 903 aa5.83□□□□□ -1.48
VPS13D-214ENST00000620676 CD2BP2O95400 341 aaKnown RBP5.83□□□□□ -1.48
VPS13D-214ENST00000620676 ZSCAN20P17040 1043 aaPredicted RBP5.83□□□□□ -1.48
VPS13D-214ENST00000620676 GOLGA1Q92805 767 aa5.83□□□□□ -1.48
VPS13D-214ENST00000620676 PDCP20941 246 aa5.83□□□□□ -1.48
VPS13D-214ENST00000620676 ERO1AQ96HE7 468 aa5.83□□□□□ -1.48
VPS13D-214ENST00000620676 CEP83Q9Y592 693 aa5.83□□□□□ -1.48
VPS13D-214ENST00000620676 MINK1Q8N4C8 1332 aaPredicted RBP5.83□□□□□ -1.48
VPS13D-214ENST00000620676 LMOD1P29536 600 aaPredicted RBP5.83□□□□□ -1.48
VPS13D-214ENST00000620676 PPP1R9BQ96SB3 815 aa5.83□□□□□ -1.48
VPS13D-214ENST00000620676 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.83□□□□□ -1.48
VPS13D-214ENST00000620676 ANO10Q9NW15 660 aa5.83□□□□□ -1.48
VPS13D-214ENST00000620676 SPAG9O60271 1321 aaKnown RBP5.83□□□□□ -1.48
VPS13D-214ENST00000620676 WASHC4Q2M389 1173 aa5.83□□□□□ -1.48
VPS13D-214ENST00000620676 GCC1Q96CN9 775 aa5.83□□□□□ -1.48
VPS13D-214ENST00000620676 RSRC1Q96IZ7 334 aaKnown RBP5.83□□□□□ -1.48
VPS13D-214ENST00000620676 CALR3Q96L12 384 aaKnown RBP5.83□□□□□ -1.48
VPS13D-214ENST00000620676 LRRC2Q9BYS8 371 aa5.83□□□□□ -1.48
VPS13D-214ENST00000620676 SPINK5Q9NQ38 1064 aaPredicted RBP5.83□□□□□ -1.48
VPS13D-214ENST00000620676 RIPOR2Q9Y4F9 1068 aa5.83□□□□□ -1.48
VPS13D-214ENST00000620676 TERF2Q15554 542 aa5.83□□□□□ -1.48
VPS13D-214ENST00000620676 TEX11Q8IYF3 940 aa5.83□□□□□ -1.48
VPS13D-214ENST00000620676 FAM76AQ8TAV0 307 aa5.83□□□□□ -1.48
VPS13D-214ENST00000620676 CCT5P48643 541 aa5.83□□□□□ -1.48
VPS13D-214ENST00000620676 SLC4A2P04920 1241 aa5.83□□□□□ -1.48
VPS13D-214ENST00000620676 WDR63Q8IWG1 891 aa5.83□□□□□ -1.48
VPS13D-214ENST00000620676 SEPT11Q9NVA2 429 aaKnown RBP5.83□□□□□ -1.48
VPS13D-214ENST00000620676 MYO6Q9UM54 1294 aa5.83□□□□□ -1.48
VPS13D-214ENST00000620676 UACAQ9BZF9 1416 aa5.83□□□□□ -1.48
VPS13D-214ENST00000620676 TEFQ10587 303 aa5.83□□□□□ -1.48
VPS13D-214ENST00000620676 FAM173BQ6P4H8 233 aa5.83□□□□□ -1.48
VPS13D-214ENST00000620676 SMC1AQ14683 1233 aaKnown RBP5.83□□□□□ -1.48
VPS13D-214ENST00000620676 AFAP1L1Q8TED9 768 aa5.83□□□□□ -1.48
VPS13D-214ENST00000620676 GUCA1BQ9UMX6 200 aa5.83□□□□□ -1.48
VPS13D-214ENST00000620676 ZSCAN22P10073 491 aaPredicted RBP5.82□□□□□ -1.48
VPS13D-214ENST00000620676 EFCC1Q9HA90 598 aa5.82□□□□□ -1.48
VPS13D-214ENST00000620676 KDM2BQ8NHM5 1336 aa5.82□□□□□ -1.48
VPS13D-214ENST00000620676 SSR1P43307 286 aaKnown RBP5.82□□□□□ -1.48
VPS13D-214ENST00000620676 ATP1A2P50993 1020 aa5.82□□□□□ -1.48
VPS13D-214ENST00000620676 TSPYL4Q9UJ04 414 aa5.82□□□□□ -1.48
VPS13D-214ENST00000620676 F6X3S4 739 aa5.82□□□□□ -1.48
VPS13D-214ENST00000620676 HSF2BPO75031 334 aa5.82□□□□□ -1.48
VPS13D-214ENST00000620676 ZMYND10O75800 440 aa5.82□□□□□ -1.48
VPS13D-214ENST00000620676 NCBP1Q09161 790 aaKnown RBP5.82□□□□□ -1.48
VPS13D-214ENST00000620676 MRVI1Q9Y6F6 885 aa5.82□□□□□ -1.48
VPS13D-214ENST00000620676 PDE1CQ14123 709 aaPredicted RBP5.82□□□□□ -1.48
VPS13D-214ENST00000620676 ICE2Q659A1 982 aa5.82□□□□□ -1.48
VPS13D-214ENST00000620676 TMEM132EQ6IEE7 984 aa5.82□□□□□ -1.48
VPS13D-214ENST00000620676 PNMA8AQ86V59 439 aaPredicted RBP5.82□□□□□ -1.48
VPS13D-214ENST00000620676 N4BP2L2Q92802 583 aaPredicted RBP5.82□□□□□ -1.48
VPS13D-214ENST00000620676 CBX8Q9HC52 389 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms