RNA–Protein interactions for RNA: ENST00000607055.1

NECAB3-221, Transcript of N-terminal EF-hand calcium binding protein 3, human

TSL 4

Gene NECAB3, Length 554 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NECAB3-221	ENST00000607055	NECTIN2	Q92692	538 aa		27.93	■■■□□ 2.06
NECAB3-221	ENST00000607055	COL5A3	P25940	1745 aa	Predicted RBP	27.92	■■■□□ 2.06
NECAB3-221	ENST00000607055	NUP188	Q5SRE5	1749 aa		27.92	■■■□□ 2.06
NECAB3-221	ENST00000607055	LAMB4	A4D0S4	1761 aa		27.92	■■■□□ 2.06
NECAB3-221	ENST00000607055	CRKL	P46109	303 aa	Known RBP	27.92	■■■□□ 2.06
NECAB3-221	ENST00000607055	HMGB2	P26583	209 aa	Known RBP	27.91	■■■□□ 2.06
NECAB3-221	ENST00000607055	HDGFL1	Q5TGJ6	251 aa		27.91	■■■□□ 2.06
NECAB3-221	ENST00000607055	C4B	P0C0L5	1744 aa		27.9	■■■□□ 2.06
NECAB3-221	ENST00000607055	CCDC87	Q9NVE4	849 aa		27.9	■■■□□ 2.06
NECAB3-221	ENST00000607055	SOS1	Q07889	1333 aa	Predicted RBP	27.9	■■■□□ 2.06
NECAB3-221	ENST00000607055	CNTNAP4	Q9C0A0	1308 aa		27.9	■■■□□ 2.06
NECAB3-221	ENST00000607055	A1BG	P04217	495 aa		27.89	■■■□□ 2.06
NECAB3-221	ENST00000607055	AK7	Q96M32	723 aa		27.89	■■■□□ 2.06
NECAB3-221	ENST00000607055	VAMP4	O75379	141 aa		27.88	■■■□□ 2.05
NECAB3-221	ENST00000607055	INTS5	Q6P9B9	1019 aa	Known RBP	27.88	■■■□□ 2.05
NECAB3-221	ENST00000607055	CANX	P27824	592 aa	Known RBP	27.87	■■■□□ 2.05
NECAB3-221	ENST00000607055	PIP4K2A	P48426	406 aa	Predicted RBP	27.87	■■■□□ 2.05
NECAB3-221	ENST00000607055	ZNF827	Q17R98	1081 aa		27.87	■■■□□ 2.05
NECAB3-221	ENST00000607055	RC3H1	Q5TC82	1133 aa	Known RBP	27.87	■■■□□ 2.05
NECAB3-221	ENST00000607055	ANO8	Q9HCE9	1232 aa	Predicted RBP	27.87	■■■□□ 2.05
NECAB3-221	ENST00000607055	ZBTB1	Q9Y2K1	713 aa		27.87	■■■□□ 2.05
NECAB3-221	ENST00000607055	GNPAT	O15228	680 aa		27.86	■■■□□ 2.05
NECAB3-221	ENST00000607055	AKT1S1	Q96B36	256 aa		27.86	■■■□□ 2.05
NECAB3-221	ENST00000607055	STK32B	Q9NY57	414 aa		27.86	■■■□□ 2.05
NECAB3-221	ENST00000607055	NBPF14	Q5TI25	921 aa		27.85	■■■□□ 2.05
NECAB3-221	ENST00000607055	TCERG1	O14776	1098 aa	Known RBP	27.84	■■■□□ 2.05
NECAB3-221	ENST00000607055	CCDC30	Q5VVM6	783 aa		27.84	■■■□□ 2.05
NECAB3-221	ENST00000607055	MYH14	Q7Z406	1995 aa	Known RBP	27.83	■■■□□ 2.05
NECAB3-221	ENST00000607055	NBPF26	B4DH59	902 aa		27.83	■■■□□ 2.05
NECAB3-221	ENST00000607055	NBPF10	Q6P3W6	841 aa	Known RBP	27.83	■■■□□ 2.05
NECAB3-221	ENST00000607055	NBPF15	Q8N660	670 aa		27.83	■■■□□ 2.05
NECAB3-221	ENST00000607055	CHMP4A	Q9BY43	222 aa		27.83	■■■□□ 2.05
NECAB3-221	ENST00000607055	CHPF2	Q9P2E5	772 aa		27.83	■■■□□ 2.05
NECAB3-221	ENST00000607055	ERBB4	Q15303	1308 aa		27.83	■■■□□ 2.05
NECAB3-221	ENST00000607055	RPS6KA4	O75676	772 aa		27.82	■■■□□ 2.04
NECAB3-221	ENST00000607055	MYL6B	P14649	208 aa		27.82	■■■□□ 2.04
NECAB3-221	ENST00000607055	SLC15A2	Q16348	729 aa		27.82	■■■□□ 2.04
NECAB3-221	ENST00000607055	TFCP2L1	Q9NZI6	479 aa		27.82	■■■□□ 2.04
NECAB3-221	ENST00000607055	ZNF330	Q9Y3S2	320 aa	Predicted RBP	27.82	■■■□□ 2.04
NECAB3-221	ENST00000607055	ANXA1	P04083	346 aa		27.81	■■■□□ 2.04
NECAB3-221	ENST00000607055	CT47B1	P0C2W7	299 aa	Predicted RBP	27.81	■■■□□ 2.04
NECAB3-221	ENST00000607055	SMIM5	Q71RC9	77 aa		27.81	■■■□□ 2.04
NECAB3-221	ENST00000607055	RTCB	Q9Y3I0	505 aa	Known RBP	27.81	■■■□□ 2.04
NECAB3-221	ENST00000607055	PHF14	O94880	888 aa		27.8	■■■□□ 2.04
NECAB3-221	ENST00000607055	PDIA6	Q15084	440 aa		27.8	■■■□□ 2.04
NECAB3-221	ENST00000607055	PROSER3	Q2NL68	480 aa		27.8	■■■□□ 2.04
NECAB3-221	ENST00000607055	AMIGO3	Q86WK7	504 aa		27.8	■■■□□ 2.04
NECAB3-221	ENST00000607055	STK31	Q9BXU1	1019 aa		27.8	■■■□□ 2.04
NECAB3-221	ENST00000607055	DBF4	Q9UBU7	674 aa	Predicted RBP	27.8	■■■□□ 2.04
NECAB3-221	ENST00000607055	DDX21	Q9NR30	783 aa	Known RBP eCLIP	27.79	■■■□□ 2.04
NECAB3-221	ENST00000607055	IL6ST	P40189	918 aa	Predicted RBP	27.78	■■■□□ 2.04
NECAB3-221	ENST00000607055	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	27.76	■■■□□ 2.03
NECAB3-221	ENST00000607055	EIF5	P55010	431 aa	Known RBP	27.76	■■■□□ 2.03
NECAB3-221	ENST00000607055	NPM2	Q86SE8	214 aa	Known RBP	27.76	■■■□□ 2.03
NECAB3-221	ENST00000607055	ZNF428	Q96B54	188 aa		27.76	■■■□□ 2.03
NECAB3-221	ENST00000607055	UBR3	Q6ZT12	1888 aa		27.76	■■■□□ 2.03
NECAB3-221	ENST00000607055	COL15A1	P39059	1388 aa		27.75	■■■□□ 2.03
NECAB3-221	ENST00000607055	SSFA2	P28290	1259 aa		27.75	■■■□□ 2.03
NECAB3-221	ENST00000607055	TUBGCP6	Q96RT7	1819 aa		27.74	■■■□□ 2.03
NECAB3-221	ENST00000607055	PNPLA7	Q6ZV29	1317 aa		27.74	■■■□□ 2.03
NECAB3-221	ENST00000607055	SLC4A2	P04920	1241 aa		27.74	■■■□□ 2.03
NECAB3-221	ENST00000607055	TRAPPC3L	Q5T215	181 aa		27.74	■■■□□ 2.03
NECAB3-221	ENST00000607055	SSH1	Q8WYL5	1049 aa		27.74	■■■□□ 2.03
NECAB3-221	ENST00000607055	BCL2L13	Q9BXK5	485 aa		27.74	■■■□□ 2.03
NECAB3-221	ENST00000607055	HYPK	Q9NX55	129 aa		27.74	■■■□□ 2.03
NECAB3-221	ENST00000607055	LRP10	Q7Z4F1	713 aa		27.73	■■■□□ 2.03
NECAB3-221	ENST00000607055	ARX	Q96QS3	562 aa		27.73	■■■□□ 2.03
NECAB3-221	ENST00000607055	MSH5	O43196	834 aa		27.72	■■■□□ 2.03
NECAB3-221	ENST00000607055	ADRA2B	P18089	450 aa		27.72	■■■□□ 2.03
NECAB3-221	ENST00000607055	RARS	P54136	660 aa	Known RBP	27.72	■■■□□ 2.03
NECAB3-221	ENST00000607055	R3HDM1	Q15032	1099 aa	Known RBP	27.72	■■■□□ 2.03
NECAB3-221	ENST00000607055	ALDH1L2	Q3SY69	923 aa		27.72	■■■□□ 2.03
NECAB3-221	ENST00000607055	FLAD1	Q8NFF5	587 aa		27.72	■■■□□ 2.03
NECAB3-221	ENST00000607055	ARHGEF1	Q92888	912 aa	Known RBP	27.72	■■■□□ 2.03
NECAB3-221	ENST00000607055	SMC4	Q9NTJ3	1288 aa		27.72	■■■□□ 2.03
NECAB3-221	ENST00000607055		A0A087WZG4	1122 aa		27.71	■■■□□ 2.03
NECAB3-221	ENST00000607055	AIMP1	Q12904	312 aa	Known RBP	27.71	■■■□□ 2.03
NECAB3-221	ENST00000607055	COL23A1	Q86Y22	540 aa	Predicted RBP	27.71	■■■□□ 2.03
NECAB3-221	ENST00000607055	XAGE3	Q8WTP9	111 aa		27.71	■■■□□ 2.03
NECAB3-221	ENST00000607055	PHAX	Q9H814	394 aa	Known RBP	27.71	■■■□□ 2.03
NECAB3-221	ENST00000607055	RFC4	P35249	363 aa		27.7	■■■□□ 2.02
NECAB3-221	ENST00000607055	COPS6	Q7L5N1	327 aa		27.7	■■■□□ 2.02
NECAB3-221	ENST00000607055	DZIP3	Q86Y13	1208 aa	Known RBP	27.7	■■■□□ 2.02
NECAB3-221	ENST00000607055	MRPL50	Q8N5N7	158 aa	Known RBP	27.7	■■■□□ 2.02
NECAB3-221	ENST00000607055	TBC1D2B	Q9UPU7	963 aa		27.7	■■■□□ 2.02
NECAB3-221	ENST00000607055	TTLL7	Q6ZT98	887 aa		27.69	■■■□□ 2.02
NECAB3-221	ENST00000607055	G2E3	Q7L622	706 aa		27.69	■■■□□ 2.02
NECAB3-221	ENST00000607055	PSD	A5PKW4	1024 aa	Predicted RBP	27.68	■■■□□ 2.02
NECAB3-221	ENST00000607055	QSER1	Q2KHR3	1735 aa		27.67	■■■□□ 2.02
NECAB3-221	ENST00000607055	KIF6	Q6ZMV9	814 aa		27.67	■■■□□ 2.02
NECAB3-221	ENST00000607055	SRP68	Q9UHB9	627 aa	Known RBP	27.67	■■■□□ 2.02
NECAB3-221	ENST00000607055	RCAN3	Q9UKA8	241 aa		27.66	■■■□□ 2.02
NECAB3-221	ENST00000607055	C4A	P0C0L4	1744 aa		27.66	■■■□□ 2.02
NECAB3-221	ENST00000607055	ZPR1	O75312	459 aa		27.65	■■■□□ 2.02
NECAB3-221	ENST00000607055	BCAR3	O75815	825 aa		27.65	■■■□□ 2.02
NECAB3-221	ENST00000607055	FLII	Q13045	1269 aa		27.65	■■■□□ 2.02
NECAB3-221	ENST00000607055	PDGFD	Q9GZP0	370 aa	Predicted RBP	27.65	■■■□□ 2.02
NECAB3-221	ENST00000607055	NARF	Q9UHQ1	456 aa		27.65	■■■□□ 2.02
NECAB3-221	ENST00000607055	USP42	Q9H9J4	1324 aa	Known RBP	27.65	■■■□□ 2.02
NECAB3-221	ENST00000607055	ZBTB3	Q9H5J0	574 aa		27.64	■■■□□ 2.02

Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms