RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 ZNF496Q96IT1 587 aaPredicted RBP10.22□□□□□ -0.77
CUX1-219ENST00000606749 RSPH6AQ9H0K4 717 aa10.22□□□□□ -0.77
CUX1-219ENST00000606749 NUDCQ9Y266 331 aa10.22□□□□□ -0.77
CUX1-219ENST00000606749 ADCY9O60503 1353 aa10.22□□□□□ -0.77
CUX1-219ENST00000606749 KCPQ6ZWJ8 1503 aa10.22□□□□□ -0.77
CUX1-219ENST00000606749 ADAMTS7Q9UKP4 1686 aa10.22□□□□□ -0.77
CUX1-219ENST00000606749 C4AP0C0L4 1744 aa10.21□□□□□ -0.77
CUX1-219ENST00000606749 N4BP2Q86UW6 1770 aaPredicted RBP10.21□□□□□ -0.77
CUX1-219ENST00000606749 CANXP27824 592 aaKnown RBP10.21□□□□□ -0.77
CUX1-219ENST00000606749 NFIXQ14938 502 aa10.21□□□□□ -0.77
CUX1-219ENST00000606749 ZNF526Q8TF50 670 aaPredicted RBP10.21□□□□□ -0.77
CUX1-219ENST00000606749 TEX13AQ9BXU3 409 aaPredicted RBP10.21□□□□□ -0.77
CUX1-219ENST00000606749 BCL2L12Q9HB09 334 aa10.21□□□□□ -0.77
CUX1-219ENST00000606749 PIM2Q9P1W9 311 aa10.21□□□□□ -0.77
CUX1-219ENST00000606749 KCNQ3O43525 872 aa10.2□□□□□ -0.78
CUX1-219ENST00000606749 U2AF1L5P0DN76 240 aaPredicted RBP10.2□□□□□ -0.78
CUX1-219ENST00000606749 CHRNA5P30532 468 aa10.2□□□□□ -0.78
CUX1-219ENST00000606749 COL15A1P39059 1388 aa10.2□□□□□ -0.78
CUX1-219ENST00000606749 EIF5P55010 431 aaKnown RBP10.2□□□□□ -0.78
CUX1-219ENST00000606749 U2AF1Q01081 240 aaKnown RBP eCLIP10.2□□□□□ -0.78
CUX1-219ENST00000606749 VIRMAQ69YN4 1812 aaKnown RBP10.2□□□□□ -0.78
CUX1-219ENST00000606749 CEMIPQ8WUJ3 1361 aa10.2□□□□□ -0.78
CUX1-219ENST00000606749 KIAA1551Q9HCM1 1747 aa10.2□□□□□ -0.78
CUX1-219ENST00000606749 HEG1Q9ULI3 1381 aa10.19□□□□□ -0.78
CUX1-219ENST00000606749 BTBD11A6QL63 1104 aa10.19□□□□□ -0.78
CUX1-219ENST00000606749 SERPINB2P05120 415 aa10.19□□□□□ -0.78
CUX1-219ENST00000606749 DALRD3Q5D0E6 543 aaKnown RBP10.19□□□□□ -0.78
CUX1-219ENST00000606749 FMNL2Q96PY5 1086 aa10.19□□□□□ -0.78
CUX1-219ENST00000606749 A0A087WZG4 1122 aa10.18□□□□□ -0.78
CUX1-219ENST00000606749 A1BGP04217 495 aa10.18□□□□□ -0.78
CUX1-219ENST00000606749 UBR2Q8IWV8 1755 aa10.17□□□□□ -0.78
CUX1-219ENST00000606749 KIF3CO14782 793 aa10.17□□□□□ -0.78
CUX1-219ENST00000606749 IL6STP40189 918 aaPredicted RBP10.17□□□□□ -0.78
CUX1-219ENST00000606749 MCM10Q7L590 875 aa10.17□□□□□ -0.78
CUX1-219ENST00000606749 RTF1Q92541 710 aaKnown RBP10.17□□□□□ -0.78
CUX1-219ENST00000606749 TBC1D2BQ9UPU7 963 aa10.17□□□□□ -0.78
CUX1-219ENST00000606749 USP16Q9Y5T5 823 aa10.17□□□□□ -0.78
CUX1-219ENST00000606749 HTATSF1O43719 755 aaKnown RBP10.16□□□□□ -0.78
CUX1-219ENST00000606749 DCTN1Q14203 1278 aa10.16□□□□□ -0.78
CUX1-219ENST00000606749 C9orf131Q5VYM1 1079 aa10.16□□□□□ -0.78
CUX1-219ENST00000606749 TBC1D9BQ66K14 1250 aa10.16□□□□□ -0.78
CUX1-219ENST00000606749 BICDL1Q6ZP65 573 aa10.16□□□□□ -0.78
CUX1-219ENST00000606749 BRCA1P38398 1863 aaKnown RBP10.15□□□□□ -0.78
CUX1-219ENST00000606749 PRAMEF22A3QJZ6 481 aa10.15□□□□□ -0.78
CUX1-219ENST00000606749 ZNF330Q9Y3S2 320 aaPredicted RBP10.15□□□□□ -0.78
CUX1-219ENST00000606749 SIPA1L3O60292 1781 aaPredicted RBP10.14□□□□□ -0.79
CUX1-219ENST00000606749 H0YIN7 160 aa10.14□□□□□ -0.79
CUX1-219ENST00000606749 CAMTA2O94983 1202 aa10.14□□□□□ -0.79
CUX1-219ENST00000606749 SNRPA1P09661 255 aaKnown RBP10.14□□□□□ -0.79
CUX1-219ENST00000606749 TAF7Q15545 349 aaPredicted RBP10.14□□□□□ -0.79
CUX1-219ENST00000606749 NPM2Q86SE8 214 aaKnown RBP10.14□□□□□ -0.79
CUX1-219ENST00000606749 C2CD5Q86YS7 1000 aa10.14□□□□□ -0.79
CUX1-219ENST00000606749 TTLL6Q8N841 843 aa10.14□□□□□ -0.79
CUX1-219ENST00000606749 AFDNP55196 1824 aaKnown RBP10.13□□□□□ -0.79
CUX1-219ENST00000606749 ARFGEF1Q9Y6D6 1849 aa10.13□□□□□ -0.79
CUX1-219ENST00000606749 HSPA6P17066 643 aa10.13□□□□□ -0.79
CUX1-219ENST00000606749 PIP4K2AP48426 406 aaPredicted RBP10.13□□□□□ -0.79
CUX1-219ENST00000606749 DZIP3Q86Y13 1208 aaKnown RBP10.13□□□□□ -0.79
CUX1-219ENST00000606749 PLEKHF1Q96S99 279 aa10.13□□□□□ -0.79
CUX1-219ENST00000606749 SETDB2Q96T68 719 aa10.13□□□□□ -0.79
CUX1-219ENST00000606749 BRIP1Q9BX63 1249 aa10.13□□□□□ -0.79
CUX1-219ENST00000606749 NMRK2Q9NPI5 230 aa10.13□□□□□ -0.79
CUX1-219ENST00000606749 MIS18AQ9NYP9 233 aa10.13□□□□□ -0.79
CUX1-219ENST00000606749 RNF181Q9P0P0 153 aa10.13□□□□□ -0.79
CUX1-219ENST00000606749 CEP350Q5VT06 3117 aa10.13□□□□□ -0.79
CUX1-219ENST00000606749 NRXN2Q9P2S2 1712 aa10.13□□□□□ -0.79
CUX1-219ENST00000606749 TOMM70O94826 608 aa10.12□□□□□ -0.79
CUX1-219ENST00000606749 NEFMP07197 916 aa10.12□□□□□ -0.79
CUX1-219ENST00000606749 PDE6BP35913 854 aa10.12□□□□□ -0.79
CUX1-219ENST00000606749 PRR5LQ6MZQ0 368 aa10.12□□□□□ -0.79
CUX1-219ENST00000606749 CCDC24Q8N4L8 307 aa10.12□□□□□ -0.79
CUX1-219ENST00000606749 PDZRN3Q9UPQ7 1066 aa10.12□□□□□ -0.79
CUX1-219ENST00000606749 CARMIL3Q8ND23 1372 aa10.12□□□□□ -0.79
CUX1-219ENST00000606749 NBPF26B4DH59 902 aa10.11□□□□□ -0.79
CUX1-219ENST00000606749 RASSF7Q02833 373 aa10.11□□□□□ -0.79
CUX1-219ENST00000606749 NBPF10Q6P3W6 841 aaKnown RBP10.11□□□□□ -0.79
CUX1-219ENST00000606749 CLEC4GQ6UXB4 293 aa10.11□□□□□ -0.79
CUX1-219ENST00000606749 NBPF15Q8N660 670 aa10.11□□□□□ -0.79
CUX1-219ENST00000606749 ZNF622Q969S3 477 aaKnown RBP eCLIP10.11□□□□□ -0.798e-8■■□□□ 14.1
CUX1-219ENST00000606749 LMNB1P20700 586 aa10.1□□□□□ -0.79
CUX1-219ENST00000606749 PRELPP51888 382 aa10.1□□□□□ -0.79
CUX1-219ENST00000606749 NFE2L2Q16236 605 aa10.1□□□□□ -0.79
CUX1-219ENST00000606749 PNNQ9H307 717 aaKnown RBP10.1□□□□□ -0.79
CUX1-219ENST00000606749 RRAGCQ9HB90 399 aa10.1□□□□□ -0.79
CUX1-219ENST00000606749 KDM2BQ8NHM5 1336 aa10.09□□□□□ -0.79
CUX1-219ENST00000606749 NPHP1O15259 732 aa10.09□□□□□ -0.79
CUX1-219ENST00000606749 CNBD1Q8NA66 436 aa10.09□□□□□ -0.79
CUX1-219ENST00000606749 PNISRQ8TF01 805 aaKnown RBP10.09□□□□□ -0.79
CUX1-219ENST00000606749 THUMPD2Q9BTF0 503 aaKnown RBP10.09□□□□□ -0.79
CUX1-219ENST00000606749 SBF1O95248 1867 aa10.08□□□□□ -0.8
CUX1-219ENST00000606749 NFKBIEO00221 500 aa10.08□□□□□ -0.8
CUX1-219ENST00000606749 RGL2O15211 777 aa10.08□□□□□ -0.8
CUX1-219ENST00000606749 C21orf2O43822 256 aa10.08□□□□□ -0.8
CUX1-219ENST00000606749 SRGNP10124 158 aa10.08□□□□□ -0.8
CUX1-219ENST00000606749 EIF4A1P60842 406 aaKnown RBP10.08□□□□□ -0.8
CUX1-219ENST00000606749 ST5P78524 1137 aa10.08□□□□□ -0.8
CUX1-219ENST00000606749 RALBP1Q15311 655 aa10.08□□□□□ -0.8
CUX1-219ENST00000606749 NBPF5PQ86XG9 351 aaPredicted RBP10.08□□□□□ -0.8
CUX1-219ENST00000606749 POTEDQ86YR6 584 aa10.08□□□□□ -0.8
CUX1-219ENST00000606749 RBM46Q8TBY0 533 aaKnown RBP10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms