RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 KLHL34Q8N239 644 aa25.36■■□□□ 1.65
UPF1-212ENST00000601689 RRP7AQ9Y3A4 280 aaKnown RBP25.36■■□□□ 1.65
UPF1-212ENST00000601689 AMIGO3Q86WK7 504 aa25.35■■□□□ 1.65
UPF1-212ENST00000601689 BABAM1Q9NWV8 329 aa25.35■■□□□ 1.65
UPF1-212ENST00000601689 COL24A1Q17RW2 1714 aa25.34■■□□□ 1.65
UPF1-212ENST00000601689 A0A087WZG4 1122 aa25.34■■□□□ 1.65
UPF1-212ENST00000601689 SMIM5Q71RC9 77 aa25.34■■□□□ 1.65
UPF1-212ENST00000601689 TSPYL4Q9UJ04 414 aa25.34■■□□□ 1.65
UPF1-212ENST00000601689 KCNQ3O43525 872 aa25.33■■□□□ 1.65
UPF1-212ENST00000601689 CANXP27824 592 aaKnown RBP25.33■■□□□ 1.65
UPF1-212ENST00000601689 CALD1Q05682 793 aaKnown RBP25.33■■□□□ 1.65
UPF1-212ENST00000601689 THUMPD2Q9BTF0 503 aaKnown RBP25.33■■□□□ 1.65
UPF1-212ENST00000601689 FHDC1Q9C0D6 1143 aaPredicted RBP25.33■■□□□ 1.65
UPF1-212ENST00000601689 MIS18AQ9NYP9 233 aa25.32■■□□□ 1.64
UPF1-212ENST00000601689 ZBTB1Q9Y2K1 713 aa25.32■■□□□ 1.64
UPF1-212ENST00000601689 SOS1Q07889 1333 aaPredicted RBP25.31■■□□□ 1.64
UPF1-212ENST00000601689 APAF1O14727 1248 aa25.3■■□□□ 1.64
UPF1-212ENST00000601689 SYT17Q9BSW7 474 aa25.3■■□□□ 1.64
UPF1-212ENST00000601689 ZNF330Q9Y3S2 320 aaPredicted RBP25.3■■□□□ 1.64
UPF1-212ENST00000601689 IL6STP40189 918 aaPredicted RBP25.29■■□□□ 1.64
UPF1-212ENST00000601689 COL15A1P39059 1388 aa25.29■■□□□ 1.64
UPF1-212ENST00000601689 CCDC184Q52MB2 194 aa25.28■■□□□ 1.64
UPF1-212ENST00000601689 LAS1LQ9Y4W2 734 aaKnown RBP25.28■■□□□ 1.64
UPF1-212ENST00000601689 USP42Q9H9J4 1324 aaKnown RBP25.28■■□□□ 1.64
UPF1-212ENST00000601689 KDM3BQ7LBC6 1761 aa25.28■■□□□ 1.64
UPF1-212ENST00000601689 C4AP0C0L4 1744 aa25.27■■□□□ 1.64
UPF1-212ENST00000601689 GYS1P13807 737 aa25.27■■□□□ 1.64
UPF1-212ENST00000601689 NARFQ9UHQ1 456 aa25.27■■□□□ 1.64
UPF1-212ENST00000601689 USP16Q9Y5T5 823 aa25.27■■□□□ 1.64
UPF1-212ENST00000601689 PARP3Q9Y6F1 533 aa25.27■■□□□ 1.64
UPF1-212ENST00000601689 MMP10P09238 476 aa25.26■■□□□ 1.63
UPF1-212ENST00000601689 EIF4A1P60842 406 aaKnown RBP25.26■■□□□ 1.63
UPF1-212ENST00000601689 EIF5P55010 431 aaKnown RBP25.25■■□□□ 1.63
UPF1-212ENST00000601689 TRIM35Q9UPQ4 493 aa25.25■■□□□ 1.63
UPF1-212ENST00000601689 GIGYF1O75420 1035 aaPredicted RBP25.24■■□□□ 1.63
UPF1-212ENST00000601689 A1BGP04217 495 aa25.24■■□□□ 1.63
UPF1-212ENST00000601689 USPL1Q5W0Q7 1092 aa25.24■■□□□ 1.63
UPF1-212ENST00000601689 CD2APQ9Y5K6 639 aa25.24■■□□□ 1.63
UPF1-212ENST00000601689 SRP68Q9UHB9 627 aaKnown RBP25.23■■□□□ 1.63
UPF1-212ENST00000601689 FAM9BQ8IZU0 186 aa25.21■■□□□ 1.63
UPF1-212ENST00000601689 CFAP44Q96MT7 982 aa25.21■■□□□ 1.63
UPF1-212ENST00000601689 LAMB4A4D0S4 1761 aa25.21■■□□□ 1.63
UPF1-212ENST00000601689 PRAMEF22A3QJZ6 481 aa25.2■■□□□ 1.62
UPF1-212ENST00000601689 CHL1O00533 1208 aa25.2■■□□□ 1.62
UPF1-212ENST00000601689 GNAI1P63096 354 aa25.19■■□□□ 1.62
UPF1-212ENST00000601689 FKBP8Q14318 412 aa25.19■■□□□ 1.62
UPF1-212ENST00000601689 DZIP3Q86Y13 1208 aaKnown RBP25.18■■□□□ 1.62
UPF1-212ENST00000601689 TBC1D2BQ9UPU7 963 aa25.18■■□□□ 1.62
UPF1-212ENST00000601689 ZNF652Q9Y2D9 606 aa25.18■■□□□ 1.62
UPF1-212ENST00000601689 NCBP3Q53F19 620 aaKnown RBP25.17■■□□□ 1.62
UPF1-212ENST00000601689 IFT57Q9NWB7 429 aa25.17■■□□□ 1.62
UPF1-212ENST00000601689 ERBB4Q15303 1308 aa25.16■■□□□ 1.62
UPF1-212ENST00000601689 GPR162Q16538 588 aa25.16■■□□□ 1.62
UPF1-212ENST00000601689 CCDC27Q2M243 656 aa25.16■■□□□ 1.62
UPF1-212ENST00000601689 CHMP4AQ9BY43 222 aa25.16■■□□□ 1.62
UPF1-212ENST00000601689 EIF2S2P20042 333 aaKnown RBP25.15■■□□□ 1.62
UPF1-212ENST00000601689 NGEFQ8N5V2 710 aa25.15■■□□□ 1.62
UPF1-212ENST00000601689 PELP1Q8IZL8 1130 aaKnown RBP25.14■■□□□ 1.62
UPF1-212ENST00000601689 NPHP1O15259 732 aa25.13■■□□□ 1.61
UPF1-212ENST00000601689 TM4SF1P30408 202 aa25.13■■□□□ 1.61
UPF1-212ENST00000601689 PIP4K2AP48426 406 aaPredicted RBP25.13■■□□□ 1.61
UPF1-212ENST00000601689 HOXB7P09629 217 aa25.12■■□□□ 1.61
UPF1-212ENST00000601689 TGFB2P61812 414 aa25.12■■□□□ 1.61
UPF1-212ENST00000601689 CLEC4GQ6UXB4 293 aa25.12■■□□□ 1.61
UPF1-212ENST00000601689 KIF6Q6ZMV9 814 aa25.12■■□□□ 1.61
UPF1-212ENST00000601689 SETDB2Q96T68 719 aa25.12■■□□□ 1.61
UPF1-212ENST00000601689 RGL2O15211 777 aa25.11■■□□□ 1.61
UPF1-212ENST00000601689 MYL6BP14649 208 aa25.11■■□□□ 1.61
UPF1-212ENST00000601689 NFIXQ14938 502 aa25.11■■□□□ 1.61
UPF1-212ENST00000601689 BICDL1Q6ZP65 573 aa25.11■■□□□ 1.61
UPF1-212ENST00000601689 NLGN2Q8NFZ4 835 aa25.11■■□□□ 1.61
UPF1-212ENST00000601689 NBPF26B4DH59 902 aa25.1■■□□□ 1.61
UPF1-212ENST00000601689 CCER2I3L3R5 266 aa25.1■■□□□ 1.61
UPF1-212ENST00000601689 NBPF10Q6P3W6 841 aaKnown RBP25.1■■□□□ 1.61
UPF1-212ENST00000601689 NBPF15Q8N660 670 aa25.1■■□□□ 1.61
UPF1-212ENST00000601689 MBIPQ9NS73 344 aa25.1■■□□□ 1.61
UPF1-212ENST00000601689 POLRMTO00411 1230 aaKnown RBP25.09■■□□□ 1.61
UPF1-212ENST00000601689 DIEXFQ68CQ4 756 aaKnown RBP25.09■■□□□ 1.61
UPF1-212ENST00000601689 WWC1Q8IX03 1113 aa25.09■■□□□ 1.61
UPF1-212ENST00000601689 SCN7AQ01118 1682 aa25.08■■□□□ 1.61
UPF1-212ENST00000601689 CAMTA2O94983 1202 aa25.08■■□□□ 1.61
UPF1-212ENST00000601689 SERPINB2P05120 415 aa25.08■■□□□ 1.61
UPF1-212ENST00000601689 BCL2L12Q9HB09 334 aa25.08■■□□□ 1.61
UPF1-212ENST00000601689 GRIN3BO60391 1043 aa25.07■■□□□ 1.6
UPF1-212ENST00000601689 ZNF853P0CG23 659 aa25.07■■□□□ 1.6
UPF1-212ENST00000601689 DDR1Q08345 913 aa25.07■■□□□ 1.6
UPF1-212ENST00000601689 HDGFL1Q5TGJ6 251 aa25.07■■□□□ 1.6
UPF1-212ENST00000601689 SALL2Q9Y467 1007 aaPredicted RBP25.07■■□□□ 1.6
UPF1-212ENST00000601689 CARMIL3Q8ND23 1372 aa25.06■■□□□ 1.6
UPF1-212ENST00000601689 TBC1D9BQ66K14 1250 aa25.06■■□□□ 1.6
UPF1-212ENST00000601689 IL16Q14005 1332 aa25.06■■□□□ 1.6
UPF1-212ENST00000601689 KIF13BQ9NQT8 1826 aa25.05■■□□□ 1.6
UPF1-212ENST00000601689 ERVV-1B6SEH8 477 aa25.05■■□□□ 1.6
UPF1-212ENST00000601689 DUSP27Q5VZP5 1158 aa25.05■■□□□ 1.6
UPF1-212ENST00000601689 WDR63Q8IWG1 891 aa25.05■■□□□ 1.6
UPF1-212ENST00000601689 BCORQ6W2J9 1755 aa25.05■■□□□ 1.6
UPF1-212ENST00000601689 C10orf71Q711Q0 1435 aa25.04■■□□□ 1.6
UPF1-212ENST00000601689 NECTIN2Q92692 538 aa25.04■■□□□ 1.6
UPF1-212ENST00000601689 SENP3-EIF4A1A0A087X0R7 540 aa25.03■■□□□ 1.6
UPF1-212ENST00000601689 DDX21Q9NR30 783 aaKnown RBP eCLIP25.03■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms