RNA–Protein interactions for RNA: ENST00000601444.2

SSBP4-210, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 427 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-210ENST00000601444 USP16Q9Y5T5 823 aa26.32■■□□□ 1.8
SSBP4-210ENST00000601444 ARHGEF1Q92888 912 aaKnown RBP26.31■■□□□ 1.8
SSBP4-210ENST00000601444 SGIP1Q9BQI5 828 aa26.31■■□□□ 1.8
SSBP4-210ENST00000601444 TSPYL4Q9UJ04 414 aa26.31■■□□□ 1.8
SSBP4-210ENST00000601444 STARD3NLO95772 234 aa26.3■■□□□ 1.8
SSBP4-210ENST00000601444 EIF4A1P60842 406 aaKnown RBP26.3■■□□□ 1.8
SSBP4-210ENST00000601444 TEX13AQ9BXU3 409 aaPredicted RBP26.3■■□□□ 1.8
SSBP4-210ENST00000601444 LAS1LQ9Y4W2 734 aaKnown RBP26.3■■□□□ 1.8
SSBP4-210ENST00000601444 KDM3BQ7LBC6 1761 aa26.3■■□□□ 1.8
SSBP4-210ENST00000601444 SNRPA1P09661 255 aaKnown RBP26.29■■□□□ 1.8
SSBP4-210ENST00000601444 A1BGP04217 495 aa26.28■■□□□ 1.8
SSBP4-210ENST00000601444 CANXP27824 592 aaKnown RBP26.28■■□□□ 1.8
SSBP4-210ENST00000601444 CHL1O00533 1208 aa26.27■■□□□ 1.8
SSBP4-210ENST00000601444 MIER1Q8N108 512 aa26.27■■□□□ 1.8
SSBP4-210ENST00000601444 SOS1Q07889 1333 aaPredicted RBP26.26■■□□□ 1.79
SSBP4-210ENST00000601444 SALL2Q9Y467 1007 aaPredicted RBP26.26■■□□□ 1.79
SSBP4-210ENST00000601444 CCER2I3L3R5 266 aa26.25■■□□□ 1.79
SSBP4-210ENST00000601444 GIGYF1O75420 1035 aaPredicted RBP26.25■■□□□ 1.79
SSBP4-210ENST00000601444 ADRA2BP18089 450 aa26.25■■□□□ 1.79
SSBP4-210ENST00000601444 RFC4P35249 363 aa26.25■■□□□ 1.79
SSBP4-210ENST00000601444 PIP4K2AP48426 406 aaPredicted RBP26.25■■□□□ 1.79
SSBP4-210ENST00000601444 BABAM1Q9NWV8 329 aa26.25■■□□□ 1.79
SSBP4-210ENST00000601444 PPP1R1BQ9UD71 204 aaPredicted RBP26.24■■□□□ 1.79
SSBP4-210ENST00000601444 SRP68Q9UHB9 627 aaKnown RBP26.24■■□□□ 1.79
SSBP4-210ENST00000601444 CFAP44Q96MT7 982 aa26.22■■□□□ 1.79
SSBP4-210ENST00000601444 ZNF853P0CG23 659 aa26.21■■□□□ 1.79
SSBP4-210ENST00000601444 EIF5P55010 431 aaKnown RBP26.21■■□□□ 1.79
SSBP4-210ENST00000601444 KRT24Q2M2I5 525 aa26.21■■□□□ 1.79
SSBP4-210ENST00000601444 WWC1Q8IX03 1113 aa26.21■■□□□ 1.79
SSBP4-210ENST00000601444 COL15A1P39059 1388 aa26.2■■□□□ 1.79
SSBP4-210ENST00000601444 C4AP0C0L4 1744 aa26.2■■□□□ 1.79
SSBP4-210ENST00000601444 COL24A1Q17RW2 1714 aa26.2■■□□□ 1.79
SSBP4-210ENST00000601444 GYS1P13807 737 aa26.2■■□□□ 1.78
SSBP4-210ENST00000601444 POLD1P28340 1107 aa26.2■■□□□ 1.78
SSBP4-210ENST00000601444 CCDC27Q2M243 656 aa26.2■■□□□ 1.78
SSBP4-210ENST00000601444 ARXQ96QS3 562 aa26.2■■□□□ 1.78
SSBP4-210ENST00000601444 MBIPQ9NS73 344 aa26.2■■□□□ 1.78
SSBP4-210ENST00000601444 ZNF330Q9Y3S2 320 aaPredicted RBP26.2■■□□□ 1.78
SSBP4-210ENST00000601444 USP42Q9H9J4 1324 aaKnown RBP26.19■■□□□ 1.78
SSBP4-210ENST00000601444 NBPF26B4DH59 902 aa26.19■■□□□ 1.78
SSBP4-210ENST00000601444 NBPF10Q6P3W6 841 aaKnown RBP26.19■■□□□ 1.78
SSBP4-210ENST00000601444 NBPF15Q8N660 670 aa26.19■■□□□ 1.78
SSBP4-210ENST00000601444 IFT57Q9NWB7 429 aa26.18■■□□□ 1.78
SSBP4-210ENST00000601444 IL6STP40189 918 aaPredicted RBP26.17■■□□□ 1.78
SSBP4-210ENST00000601444 USPL1Q5W0Q7 1092 aa26.17■■□□□ 1.78
SSBP4-210ENST00000601444 GNAI1P63096 354 aa26.16■■□□□ 1.78
SSBP4-210ENST00000601444 CALD1Q05682 793 aaKnown RBP26.16■■□□□ 1.78
SSBP4-210ENST00000601444 FKBP8Q14318 412 aa26.16■■□□□ 1.78
SSBP4-210ENST00000601444 NCBP3Q53F19 620 aaKnown RBP26.16■■□□□ 1.78
SSBP4-210ENST00000601444 ZPR1O75312 459 aa26.15■■□□□ 1.78
SSBP4-210ENST00000601444 FHDC1Q9C0D6 1143 aaPredicted RBP26.15■■□□□ 1.78
SSBP4-210ENST00000601444 NARFQ9UHQ1 456 aa26.15■■□□□ 1.78
SSBP4-210ENST00000601444 TBC1D2BQ9UPU7 963 aa26.15■■□□□ 1.78
SSBP4-210ENST00000601444 EIF2S2P20042 333 aaKnown RBP26.14■■□□□ 1.78
SSBP4-210ENST00000601444 NLGN1Q8N2Q7 840 aa26.14■■□□□ 1.78
SSBP4-210ENST00000601444 BCL2L12Q9HB09 334 aa26.14■■□□□ 1.78
SSBP4-210ENST00000601444 MMP10P09238 476 aa26.13■■□□□ 1.77
SSBP4-210ENST00000601444 LAMB4A4D0S4 1761 aa26.12■■□□□ 1.77
SSBP4-210ENST00000601444 KLHL34Q8N239 644 aa26.12■■□□□ 1.77
SSBP4-210ENST00000601444 NECTIN2Q92692 538 aa26.12■■□□□ 1.77
SSBP4-210ENST00000601444 A0A087WZG4 1122 aa26.11■■□□□ 1.77
SSBP4-210ENST00000601444 TSR2Q969E8 191 aaKnown RBP26.11■■□□□ 1.77
SSBP4-210ENST00000601444 MYL6BP14649 208 aa26.1■■□□□ 1.77
SSBP4-210ENST00000601444 NGEFQ8N5V2 710 aa26.1■■□□□ 1.77
SSBP4-210ENST00000601444 SYT17Q9BSW7 474 aa26.1■■□□□ 1.77
SSBP4-210ENST00000601444 DZIP3Q86Y13 1208 aaKnown RBP26.09■■□□□ 1.77
SSBP4-210ENST00000601444 ELL2O00472 640 aaPredicted RBP26.08■■□□□ 1.77
SSBP4-210ENST00000601444 PDIA6Q15084 440 aa26.08■■□□□ 1.77
SSBP4-210ENST00000601444 DUSP27Q5VZP5 1158 aa26.08■■□□□ 1.77
SSBP4-210ENST00000601444 NPM2Q86SE8 214 aaKnown RBP26.08■■□□□ 1.77
SSBP4-210ENST00000601444 WDR63Q8IWG1 891 aa26.08■■□□□ 1.77
SSBP4-210ENST00000601444 C8orf58Q8NAV2 365 aa26.08■■□□□ 1.77
SSBP4-210ENST00000601444 CAMTA2O94983 1202 aa26.07■■□□□ 1.76
SSBP4-210ENST00000601444 ANXA1P04083 346 aa26.07■■□□□ 1.76
SSBP4-210ENST00000601444 TM4SF1P30408 202 aa26.07■■□□□ 1.76
SSBP4-210ENST00000601444 DDR1Q08345 913 aa26.07■■□□□ 1.76
SSBP4-210ENST00000601444 PROSER3Q2NL68 480 aa26.07■■□□□ 1.76
SSBP4-210ENST00000601444 SPINK5Q9NQ38 1064 aaPredicted RBP26.07■■□□□ 1.76
SSBP4-210ENST00000601444 IL16Q14005 1332 aa26.07■■□□□ 1.76
SSBP4-210ENST00000601444 NFIXQ14938 502 aa26.05■■□□□ 1.76
SSBP4-210ENST00000601444 TBC1D9BQ66K14 1250 aa26.04■■□□□ 1.76
SSBP4-210ENST00000601444 BICDL1Q6ZP65 573 aa26.04■■□□□ 1.76
SSBP4-210ENST00000601444 TTLL7Q6ZT98 887 aa26.04■■□□□ 1.76
SSBP4-210ENST00000601444 LRP10Q7Z4F1 713 aa26.04■■□□□ 1.76
SSBP4-210ENST00000601444 TSPYL6Q8N831 410 aa26.04■■□□□ 1.76
SSBP4-210ENST00000601444 NLGN2Q8NFZ4 835 aa26.04■■□□□ 1.76
SSBP4-210ENST00000601444 PARP3Q9Y6F1 533 aa26.04■■□□□ 1.76
SSBP4-210ENST00000601444 HDGFL1Q5TGJ6 251 aa26.03■■□□□ 1.76
SSBP4-210ENST00000601444 ERBB4Q15303 1308 aa26.03■■□□□ 1.76
SSBP4-210ENST00000601444 ZNF521Q96K83 1311 aa26.03■■□□□ 1.76
SSBP4-210ENST00000601444 POLRMTO00411 1230 aaKnown RBP26.02■■□□□ 1.76
SSBP4-210ENST00000601444 HOXB7P09629 217 aa26.02■■□□□ 1.76
SSBP4-210ENST00000601444 SCN7AQ01118 1682 aa26.01■■□□□ 1.75
SSBP4-210ENST00000601444 FANCIQ9NVI1 1328 aa26.01■■□□□ 1.75
SSBP4-210ENST00000601444 CHPF2Q9P2E5 772 aa26.01■■□□□ 1.75
SSBP4-210ENST00000601444 HLFQ16534 295 aa26■■□□□ 1.75
SSBP4-210ENST00000601444 CD2APQ9Y5K6 639 aa25.99■■□□□ 1.75
SSBP4-210ENST00000601444 DDX21Q9NR30 783 aaKnown RBP eCLIP25.98■■□□□ 1.75
SSBP4-210ENST00000601444 BCORQ6W2J9 1755 aa25.97■■□□□ 1.75
SSBP4-210ENST00000601444 ZBTB3Q9H5J0 574 aa25.97■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms