RNA–Protein interactions for RNA: ENST00000599454.5

PNKP-212, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 529 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-212ENST00000599454 SLC39A6Q13433 755 aa28.64■■■□□ 2.18
PNKP-212ENST00000599454 MTHFSDQ2M296 383 aaKnown RBP28.64■■■□□ 2.18
PNKP-212ENST00000599454 C9orf131Q5VYM1 1079 aa28.64■■■□□ 2.18
PNKP-212ENST00000599454 DLEC1Q9Y238 1755 aa28.64■■■□□ 2.18
PNKP-212ENST00000599454 NARFQ9UHQ1 456 aa28.63■■■□□ 2.17
PNKP-212ENST00000599454 COL15A1P39059 1388 aa28.62■■■□□ 2.17
PNKP-212ENST00000599454 APLP1P51693 650 aa28.62■■■□□ 2.17
PNKP-212ENST00000599454 IFFO2Q5TF58 517 aa28.61■■■□□ 2.17
PNKP-212ENST00000599454 CHRNA5P30532 468 aa28.6■■■□□ 2.17
PNKP-212ENST00000599454 NMRK2Q9NPI5 230 aa28.6■■■□□ 2.17
PNKP-212ENST00000599454 NPC1L1Q9UHC9 1359 aa28.6■■■□□ 2.17
PNKP-212ENST00000599454 CC2D1BQ5T0F9 858 aaKnown RBP28.59■■■□□ 2.17
PNKP-212ENST00000599454 ZBTB1Q9Y2K1 713 aa28.59■■■□□ 2.17
PNKP-212ENST00000599454 TNRC6CQ9HCJ0 1690 aaKnown RBP28.58■■■□□ 2.17
PNKP-212ENST00000599454 SIPA1L3O60292 1781 aaPredicted RBP28.58■■■□□ 2.17
PNKP-212ENST00000599454 NFIXQ14938 502 aa28.57■■■□□ 2.16
PNKP-212ENST00000599454 KDM2BQ8NHM5 1336 aa28.57■■■□□ 2.16
PNKP-212ENST00000599454 COL3A1P02461 1466 aaPredicted RBP28.57■■■□□ 2.16
PNKP-212ENST00000599454 TTC5Q8N0Z6 440 aa28.56■■■□□ 2.16
PNKP-212ENST00000599454 RBM46Q8TBY0 533 aaKnown RBP28.56■■■□□ 2.16
PNKP-212ENST00000599454 RNF181Q9P0P0 153 aa28.56■■■□□ 2.16
PNKP-212ENST00000599454 STARD3NLO95772 234 aa28.55■■■□□ 2.16
PNKP-212ENST00000599454 C16orf71Q8IYS4 520 aaPredicted RBP28.55■■■□□ 2.16
PNKP-212ENST00000599454 CCDC88AQ3V6T2 1871 aa28.55■■■□□ 2.16
PNKP-212ENST00000599454 WDR90Q96KV7 1748 aa28.54■■■□□ 2.16
PNKP-212ENST00000599454 A0A087WZG4 1122 aa28.53■■■□□ 2.16
PNKP-212ENST00000599454 GAS2L2Q8NHY3 880 aa28.53■■■□□ 2.16
PNKP-212ENST00000599454 ZC3H4Q9UPT8 1303 aaKnown RBP28.52■■■□□ 2.16
PNKP-212ENST00000599454 SERPINB2P05120 415 aa28.52■■■□□ 2.16
PNKP-212ENST00000599454 BCL2L12Q9HB09 334 aa28.52■■■□□ 2.16
PNKP-212ENST00000599454 CANXP27824 592 aaKnown RBP28.51■■■□□ 2.15
PNKP-212ENST00000599454 TEFQ10587 303 aa28.51■■■□□ 2.15
PNKP-212ENST00000599454 TEX13AQ9BXU3 409 aaPredicted RBP28.51■■■□□ 2.15
PNKP-212ENST00000599454 SCN7AQ01118 1682 aa28.51■■■□□ 2.15
PNKP-212ENST00000599454 GNAT3A8MTJ3 354 aa28.5■■■□□ 2.15
PNKP-212ENST00000599454 EIF5P55010 431 aaKnown RBP28.5■■■□□ 2.15
PNKP-212ENST00000599454 U2SURPO15042 1029 aaKnown RBP28.49■■■□□ 2.15
PNKP-212ENST00000599454 FSTL1Q12841 308 aa28.49■■■□□ 2.15
PNKP-212ENST00000599454 HEG1Q9ULI3 1381 aa28.49■■■□□ 2.15
PNKP-212ENST00000599454 ANKRD31Q8N7Z5 1873 aa28.48■■■□□ 2.15
PNKP-212ENST00000599454 ZNF790Q6PG37 636 aa28.47■■■□□ 2.15
PNKP-212ENST00000599454 TTLL6Q8N841 843 aa28.47■■■□□ 2.15
PNKP-212ENST00000599454 IL17REQ8NFR9 667 aa28.47■■■□□ 2.15
PNKP-212ENST00000599454 ZNF496Q96IT1 587 aaPredicted RBP28.47■■■□□ 2.15
PNKP-212ENST00000599454 DNAJC5GQ8N7S2 189 aa28.46■■■□□ 2.15
PNKP-212ENST00000599454 H0YIN7 160 aa28.45■■■□□ 2.14
PNKP-212ENST00000599454 LMNB1P20700 586 aa28.45■■■□□ 2.14
PNKP-212ENST00000599454 C2CD5Q86YS7 1000 aa28.45■■■□□ 2.14
PNKP-212ENST00000599454 PDZRN3Q9UPQ7 1066 aa28.45■■■□□ 2.14
PNKP-212ENST00000599454 TIAM2Q8IVF5 1701 aa28.45■■■□□ 2.14
PNKP-212ENST00000599454 DICER1Q9UPY3 1922 aaKnown RBP28.43■■■□□ 2.14
PNKP-212ENST00000599454 RASSF7Q02833 373 aa28.43■■■□□ 2.14
PNKP-212ENST00000599454 RRAGCQ9HB90 399 aa28.43■■■□□ 2.14
PNKP-212ENST00000599454 CARMIL3Q8ND23 1372 aa28.42■■■□□ 2.14
PNKP-212ENST00000599454 CEMIPQ8WUJ3 1361 aa28.42■■■□□ 2.14
PNKP-212ENST00000599454 IL6STP40189 918 aaPredicted RBP28.42■■■□□ 2.14
PNKP-212ENST00000599454 BICDL1Q6ZP65 573 aa28.42■■■□□ 2.14
PNKP-212ENST00000599454 FMNL2Q96PY5 1086 aa28.42■■■□□ 2.14
PNKP-212ENST00000599454 CFAP53Q96M91 514 aa28.41■■■□□ 2.14
PNKP-212ENST00000599454 BCORQ6W2J9 1755 aa28.4■■■□□ 2.14
PNKP-212ENST00000599454 FER1L6Q2WGJ9 1857 aa28.4■■■□□ 2.14
PNKP-212ENST00000599454 COL11A2P13942 1736 aaPredicted RBP28.39■■■□□ 2.14
PNKP-212ENST00000599454 CNGB1Q14028 1251 aaPredicted RBP28.39■■■□□ 2.14
PNKP-212ENST00000599454 TBC1D9BQ66K14 1250 aa28.39■■■□□ 2.14
PNKP-212ENST00000599454 NPM2Q86SE8 214 aaKnown RBP28.39■■■□□ 2.14
PNKP-212ENST00000599454 BRIP1Q9BX63 1249 aa28.39■■■□□ 2.14
PNKP-212ENST00000599454 PDE6BP35913 854 aa28.38■■■□□ 2.13
PNKP-212ENST00000599454 SMC1BQ8NDV3 1235 aa28.38■■■□□ 2.13
PNKP-212ENST00000599454 GLTPD2A6NH11 291 aa28.37■■■□□ 2.13
PNKP-212ENST00000599454 TBC1D2BQ9UPU7 963 aa28.37■■■□□ 2.13
PNKP-212ENST00000599454 ZNF330Q9Y3S2 320 aaPredicted RBP28.37■■■□□ 2.13
PNKP-212ENST00000599454 CACNA1SQ13698 1873 aa28.36■■■□□ 2.13
PNKP-212ENST00000599454 PRKAR2BP31323 418 aa28.36■■■□□ 2.13
PNKP-212ENST00000599454 RSPH6AQ9H0K4 717 aa28.36■■■□□ 2.13
PNKP-212ENST00000599454 ARFGEF2Q9Y6D5 1785 aa28.35■■■□□ 2.13
PNKP-212ENST00000599454 BTBD11A6QL63 1104 aa28.35■■■□□ 2.13
PNKP-212ENST00000599454 PRR5LQ6MZQ0 368 aa28.35■■■□□ 2.13
PNKP-212ENST00000599454 PHACTR3Q96KR7 559 aa28.35■■■□□ 2.13
PNKP-212ENST00000599454 NUDCQ9Y266 331 aa28.35■■■□□ 2.13
PNKP-212ENST00000599454 NFKBIEO00221 500 aa28.34■■■□□ 2.13
PNKP-212ENST00000599454 PRELPP51888 382 aa28.34■■■□□ 2.13
PNKP-212ENST00000599454 ZNF622Q969S3 477 aaKnown RBP eCLIP28.34■■■□□ 2.13
PNKP-212ENST00000599454 KLRG1Q96E93 195 aa28.34■■■□□ 2.13
PNKP-212ENST00000599454 VEGFAP15692 232 aaPredicted RBP28.33■■■□□ 2.13
PNKP-212ENST00000599454 SETDB2Q96T68 719 aa28.33■■■□□ 2.13
PNKP-212ENST00000599454 CAMTA2O94983 1202 aa28.32■■■□□ 2.12
PNKP-212ENST00000599454 A1BGP04217 495 aa28.32■■■□□ 2.12
PNKP-212ENST00000599454 CNBD1Q8NA66 436 aa28.31■■■□□ 2.12
PNKP-212ENST00000599454 SLX4Q8IY92 1834 aa28.3■■■□□ 2.12
PNKP-212ENST00000599454 KCNQ3O43525 872 aa28.29■■■□□ 2.12
PNKP-212ENST00000599454 ST5P78524 1137 aa28.29■■■□□ 2.12
PNKP-212ENST00000599454 DZIP3Q86Y13 1208 aaKnown RBP28.29■■■□□ 2.12
PNKP-212ENST00000599454 JMYQ8N9B5 988 aa28.29■■■□□ 2.12
PNKP-212ENST00000599454 LTBP3Q9NS15 1303 aa28.28■■■□□ 2.12
PNKP-212ENST00000599454 NPHP1O15259 732 aa28.28■■■□□ 2.12
PNKP-212ENST00000599454 HTRA3P83110 453 aa28.28■■■□□ 2.12
PNKP-212ENST00000599454 DPY19L2Q6NUT2 758 aa28.28■■■□□ 2.12
PNKP-212ENST00000599454 RTF1Q92541 710 aaKnown RBP28.28■■■□□ 2.12
PNKP-212ENST00000599454 CNKSR1Q969H4 720 aa28.28■■■□□ 2.12
PNKP-212ENST00000599454 C21orf2O43822 256 aa28.27■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms