RNA–Protein interactions for RNA: ENST00000589520.1

VPS25-203, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 3

Gene VPS25, Length 639 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-203ENST00000589520 CYP27B1O15528 508 aa12.88□□□□□ -0.35
VPS25-203ENST00000589520 PLEKHM2Q8IWE5 1019 aa12.88□□□□□ -0.35
VPS25-203ENST00000589520 NFATC2IPQ8NCF5 419 aa12.88□□□□□ -0.35
VPS25-203ENST00000589520 OSBPL3Q9H4L5 887 aa12.88□□□□□ -0.35
VPS25-203ENST00000589520 MRC1P22897 1456 aa12.88□□□□□ -0.35
VPS25-203ENST00000589520 VIRMAQ69YN4 1812 aaKnown RBP12.88□□□□□ -0.35
VPS25-203ENST00000589520 KDM6AO15550 1401 aaPredicted RBP12.88□□□□□ -0.35
VPS25-203ENST00000589520 RGPD5Q99666 1765 aa12.87□□□□□ -0.35
VPS25-203ENST00000589520 COL5A2P05997 1499 aaPredicted RBP12.87□□□□□ -0.35
VPS25-203ENST00000589520 PI4KAP2A4QPH2 592 aa12.87□□□□□ -0.35
VPS25-203ENST00000589520 PI4KAP1Q8N8J0 262 aa12.87□□□□□ -0.35
VPS25-203ENST00000589520 SSH3Q8TE77 659 aa12.87□□□□□ -0.35
VPS25-203ENST00000589520 NHSL1Q5SYE7 1610 aa12.87□□□□□ -0.35
VPS25-203ENST00000589520 LARP1Q6PKG0 1096 aaKnown RBP12.86□□□□□ -0.35
VPS25-203ENST00000589520 CASC1Q6TDU7 716 aa12.86□□□□□ -0.35
VPS25-203ENST00000589520 LINS1Q8NG48 757 aa12.86□□□□□ -0.35
VPS25-203ENST00000589520 C22orf23Q9BZE7 217 aa12.86□□□□□ -0.35
VPS25-203ENST00000589520 PKD1L3Q7Z443 1732 aa12.85□□□□□ -0.35
VPS25-203ENST00000589520 SIPA1L3O60292 1781 aaPredicted RBP12.85□□□□□ -0.35
VPS25-203ENST00000589520 CDC45O75419 566 aa12.85□□□□□ -0.35
VPS25-203ENST00000589520 SEC24BO95487 1268 aa12.85□□□□□ -0.35
VPS25-203ENST00000589520 TTC22Q5TAA0 569 aa12.85□□□□□ -0.35
VPS25-203ENST00000589520 LRRCC1Q9C099 1032 aa12.85□□□□□ -0.35
VPS25-203ENST00000589520 LRRFIP2Q9Y608 721 aaKnown RBP12.85□□□□□ -0.35
VPS25-203ENST00000589520 ROBO1Q9Y6N7 1651 aa12.85□□□□□ -0.35
VPS25-203ENST00000589520 N4BP2Q86UW6 1770 aaPredicted RBP12.84□□□□□ -0.35
VPS25-203ENST00000589520 SCN11AQ9UI33 1791 aa12.84□□□□□ -0.35
VPS25-203ENST00000589520 NEXNQ0ZGT2 675 aa12.84□□□□□ -0.35
VPS25-203ENST00000589520 MTX1Q13505 466 aa12.84□□□□□ -0.35
VPS25-203ENST00000589520 POLA2Q14181 598 aa12.84□□□□□ -0.35
VPS25-203ENST00000589520 MAP3K2Q9Y2U5 619 aa12.84□□□□□ -0.35
VPS25-203ENST00000589520 PARP4Q9UKK3 1724 aaKnown RBP12.83□□□□□ -0.36
VPS25-203ENST00000589520 RBM25P49756 843 aaKnown RBP12.83□□□□□ -0.36
VPS25-203ENST00000589520 CDCA7Q9BWT1 371 aaPredicted RBP12.83□□□□□ -0.36
VPS25-203ENST00000589520 C9orf78Q9NZ63 289 aaPredicted RBP12.83□□□□□ -0.36
VPS25-203ENST00000589520 UTYO14607 1347 aa12.83□□□□□ -0.36
VPS25-203ENST00000589520 AOX1Q06278 1338 aa12.83□□□□□ -0.36
VPS25-203ENST00000589520 ADCY9O60503 1353 aa12.82□□□□□ -0.36
VPS25-203ENST00000589520 SLC39A6Q13433 755 aa12.82□□□□□ -0.36
VPS25-203ENST00000589520 PDIA6Q15084 440 aa12.82□□□□□ -0.36
VPS25-203ENST00000589520 RIC3Q7Z5B4 369 aa12.82□□□□□ -0.36
VPS25-203ENST00000589520 IL27Q8NEV9 243 aa12.82□□□□□ -0.36
VPS25-203ENST00000589520 ZNF496Q96IT1 587 aaPredicted RBP12.82□□□□□ -0.36
VPS25-203ENST00000589520 TEX13AQ9BXU3 409 aaPredicted RBP12.82□□□□□ -0.36
VPS25-203ENST00000589520 AHDC1Q5TGY3 1603 aaPredicted RBP12.81□□□□□ -0.36
VPS25-203ENST00000589520 MFAP1P55081 439 aaKnown RBP12.81□□□□□ -0.36
VPS25-203ENST00000589520 ANKRD13DQ6ZTN6 518 aa12.81□□□□□ -0.36
VPS25-203ENST00000589520 PPP1R42Q7Z4L9 355 aa12.81□□□□□ -0.36
VPS25-203ENST00000589520 ERC1Q8IUD2 1116 aa12.81□□□□□ -0.36
VPS25-203ENST00000589520 KIF1BPQ96EK5 621 aa12.81□□□□□ -0.36
VPS25-203ENST00000589520 METTL22Q9BUU2 404 aaPredicted RBP12.81□□□□□ -0.36
VPS25-203ENST00000589520 USP35Q9P2H5 1018 aa12.81□□□□□ -0.36
VPS25-203ENST00000589520 STAP2Q9UGK3 403 aa12.81□□□□□ -0.36
VPS25-203ENST00000589520 PHLPP1O60346 1717 aa12.8□□□□□ -0.36
VPS25-203ENST00000589520 PNMA6EA0A0J9YXQ4 647 aa12.8□□□□□ -0.36
VPS25-203ENST00000589520 TBC1D9Q6ZT07 1266 aa12.8□□□□□ -0.36
VPS25-203ENST00000589520 STRN4Q9NRL3 753 aa12.8□□□□□ -0.36
VPS25-203ENST00000589520 GRM8O00222 908 aa12.79□□□□□ -0.36
VPS25-203ENST00000589520 SRGAP3O43295 1099 aa12.79□□□□□ -0.36
VPS25-203ENST00000589520 EPB41L2O43491 1005 aaKnown RBP12.79□□□□□ -0.36
VPS25-203ENST00000589520 SURF6O75683 361 aaKnown RBP12.79□□□□□ -0.36
VPS25-203ENST00000589520 NBPF7P0C2Y1 421 aaPredicted RBP12.79□□□□□ -0.36
VPS25-203ENST00000589520 PDE1AP54750 535 aa12.79□□□□□ -0.36
VPS25-203ENST00000589520 PROSER3Q2NL68 480 aa12.79□□□□□ -0.36
VPS25-203ENST00000589520 COPS6Q7L5N1 327 aa12.79□□□□□ -0.36
VPS25-203ENST00000589520 VSIG10Q8N0Z9 540 aa12.79□□□□□ -0.36
VPS25-203ENST00000589520 BTG4Q9NY30 223 aa12.79□□□□□ -0.36
VPS25-203ENST00000589520 LRP6O75581 1613 aa12.79□□□□□ -0.36
VPS25-203ENST00000589520 ANXA1P04083 346 aa12.78□□□□□ -0.36
VPS25-203ENST00000589520 GSPT1P15170 499 aaKnown RBP12.78□□□□□ -0.36
VPS25-203ENST00000589520 MX1P20591 662 aa12.78□□□□□ -0.36
VPS25-203ENST00000589520 C16orf71Q8IYS4 520 aaPredicted RBP12.78□□□□□ -0.36
VPS25-203ENST00000589520 PLBD2Q8NHP8 589 aa12.78□□□□□ -0.36
VPS25-203ENST00000589520 XAGE3Q8WTP9 111 aa12.78□□□□□ -0.36
VPS25-203ENST00000589520 SNX21Q969T3 373 aa12.78□□□□□ -0.36
VPS25-203ENST00000589520 EXOC6BQ9Y2D4 811 aa12.78□□□□□ -0.36
VPS25-203ENST00000589520 THRAP3Q9Y2W1 955 aaKnown RBP12.78□□□□□ -0.36
VPS25-203ENST00000589520 USP16Q9Y5T5 823 aa12.78□□□□□ -0.36
VPS25-203ENST00000589520 COL15A1P39059 1388 aa12.78□□□□□ -0.36
VPS25-203ENST00000589520 ABCA3Q99758 1704 aa12.77□□□□□ -0.36
VPS25-203ENST00000589520 PRAMEF22A3QJZ6 481 aa12.77□□□□□ -0.37
VPS25-203ENST00000589520 SMARCA5O60264 1052 aaPredicted RBP12.77□□□□□ -0.37
VPS25-203ENST00000589520 REC8O95072 547 aa12.77□□□□□ -0.37
VPS25-203ENST00000589520 IFFO2Q5TF58 517 aa12.77□□□□□ -0.37
VPS25-203ENST00000589520 RHPN1Q8TCX5 695 aa12.77□□□□□ -0.37
VPS25-203ENST00000589520 DDX54Q8TDD1 881 aaKnown RBP12.77□□□□□ -0.37
VPS25-203ENST00000589520 SALL3Q9BXA9 1300 aa12.77□□□□□ -0.37
VPS25-203ENST00000589520 COL22A1Q8NFW1 1626 aaPredicted RBP12.77□□□□□ -0.37
VPS25-203ENST00000589520 COL14A1Q05707 1796 aaKnown RBP12.76□□□□□ -0.37
VPS25-203ENST00000589520 EXOC5O00471 708 aa12.76□□□□□ -0.37
VPS25-203ENST00000589520 SDSP20132 328 aa12.76□□□□□ -0.37
VPS25-203ENST00000589520 AIMP1Q12904 312 aaKnown RBP12.76□□□□□ -0.37
VPS25-203ENST00000589520 LRP10Q7Z4F1 713 aa12.76□□□□□ -0.37
VPS25-203ENST00000589520 TMOD3Q9NYL9 352 aa12.76□□□□□ -0.37
VPS25-203ENST00000589520 NEURL1BA8MQ27 555 aa12.75□□□□□ -0.37
VPS25-203ENST00000589520 APBB1O00213 710 aa12.75□□□□□ -0.37
VPS25-203ENST00000589520 MYL6BP14649 208 aa12.75□□□□□ -0.37
VPS25-203ENST00000589520 GCKRQ14397 625 aa12.75□□□□□ -0.37
VPS25-203ENST00000589520 TTC41PQ6P2S7 1318 aa12.75□□□□□ -0.37
VPS25-203ENST00000589520 TNS2Q63HR2 1409 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms