RNA–Protein interactions for RNA: ENST00000588687.5

CCDC43-204, Transcript of coiled-coil domain containing 43, humanhuman

TSL 2

Gene CCDC43, Length 721 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-204ENST00000588687 CHRNA5P30532 468 aa25.05■■□□□ 1.6
CCDC43-204ENST00000588687 MTHFSDQ2M296 383 aaKnown RBP25.05■■□□□ 1.6
CCDC43-204ENST00000588687 IFFO2Q5TF58 517 aa25.05■■□□□ 1.6
CCDC43-204ENST00000588687 USPL1Q5W0Q7 1092 aa25.05■■□□□ 1.6
CCDC43-204ENST00000588687 SCN7AQ01118 1682 aa25.04■■□□□ 1.6
CCDC43-204ENST00000588687 TOMM70O94826 608 aa25.04■■□□□ 1.6
CCDC43-204ENST00000588687 C9orf131Q5VYM1 1079 aa25.04■■□□□ 1.6
CCDC43-204ENST00000588687 ZBTB1Q9Y2K1 713 aa25.04■■□□□ 1.6
CCDC43-204ENST00000588687 TNRC6CQ9HCJ0 1690 aaKnown RBP25.04■■□□□ 1.6
CCDC43-204ENST00000588687 WDR90Q96KV7 1748 aa25.03■■□□□ 1.6
CCDC43-204ENST00000588687 DALRD3Q5D0E6 543 aaKnown RBP25.03■■□□□ 1.6
CCDC43-204ENST00000588687 BCL2L12Q9HB09 334 aa25.03■■□□□ 1.6
CCDC43-204ENST00000588687 PCNTO95613 3336 aa25.01■■□□□ 1.59
CCDC43-204ENST00000588687 NFIXQ14938 502 aa25.01■■□□□ 1.59
CCDC43-204ENST00000588687 NARFQ9UHQ1 456 aa25.01■■□□□ 1.59
CCDC43-204ENST00000588687 NPC1L1Q9UHC9 1359 aa25.01■■□□□ 1.59
CCDC43-204ENST00000588687 DIAPH1O60610 1272 aaKnown RBP25■■□□□ 1.59
CCDC43-204ENST00000588687 ZPR1O75312 459 aa25■■□□□ 1.59
CCDC43-204ENST00000588687 VSIG10Q8N0Z9 540 aa25■■□□□ 1.59
CCDC43-204ENST00000588687 ANKRD31Q8N7Z5 1873 aa24.99■■□□□ 1.59
CCDC43-204ENST00000588687 CARMIL3Q8ND23 1372 aa24.99■■□□□ 1.59
CCDC43-204ENST00000588687 APLP1P51693 650 aa24.98■■□□□ 1.59
CCDC43-204ENST00000588687 CC2D1BQ5T0F9 858 aaKnown RBP24.98■■□□□ 1.59
CCDC43-204ENST00000588687 DNAJC5GQ8N7S2 189 aa24.97■■□□□ 1.59
CCDC43-204ENST00000588687 COL11A2P13942 1736 aaPredicted RBP24.97■■□□□ 1.59
CCDC43-204ENST00000588687 TIAM2Q8IVF5 1701 aa24.97■■□□□ 1.59
CCDC43-204ENST00000588687 RBM46Q8TBY0 533 aaKnown RBP24.96■■□□□ 1.59
CCDC43-204ENST00000588687 RNF181Q9P0P0 153 aa24.96■■□□□ 1.59
CCDC43-204ENST00000588687 PRELPP51888 382 aa24.94■■□□□ 1.58
CCDC43-204ENST00000588687 BCORQ6W2J9 1755 aa24.93■■□□□ 1.58
CCDC43-204ENST00000588687 EIF5P55010 431 aaKnown RBP24.93■■□□□ 1.58
CCDC43-204ENST00000588687 RASSF7Q02833 373 aa24.93■■□□□ 1.58
CCDC43-204ENST00000588687 SERPINB2P05120 415 aa24.92■■□□□ 1.58
CCDC43-204ENST00000588687 IL17REQ8NFR9 667 aa24.92■■□□□ 1.58
CCDC43-204ENST00000588687 ZNF496Q96IT1 587 aaPredicted RBP24.92■■□□□ 1.58
CCDC43-204ENST00000588687 CEMIPQ8WUJ3 1361 aa24.92■■□□□ 1.58
CCDC43-204ENST00000588687 HEG1Q9ULI3 1381 aa24.92■■□□□ 1.58
CCDC43-204ENST00000588687 KDM2BQ8NHM5 1336 aa24.9■■□□□ 1.58
CCDC43-204ENST00000588687 ZC3H4Q9UPT8 1303 aaKnown RBP24.9■■□□□ 1.58
CCDC43-204ENST00000588687 CCDC88AQ3V6T2 1871 aa24.89■■□□□ 1.58
CCDC43-204ENST00000588687 CANXP27824 592 aaKnown RBP24.89■■□□□ 1.58
CCDC43-204ENST00000588687 ZNF790Q6PG37 636 aa24.89■■□□□ 1.58
CCDC43-204ENST00000588687 GNAT3A8MTJ3 354 aa24.87■■□□□ 1.57
CCDC43-204ENST00000588687 STARD3NLO95772 234 aa24.87■■□□□ 1.57
CCDC43-204ENST00000588687 FSTL1Q12841 308 aa24.87■■□□□ 1.57
CCDC43-204ENST00000588687 TTC5Q8N0Z6 440 aa24.87■■□□□ 1.57
CCDC43-204ENST00000588687 GAS2L2Q8NHY3 880 aa24.87■■□□□ 1.57
CCDC43-204ENST00000588687 FER1L6Q2WGJ9 1857 aa24.87■■□□□ 1.57
CCDC43-204ENST00000588687 NFKBIEO00221 500 aa24.85■■□□□ 1.57
CCDC43-204ENST00000588687 U2SURPO15042 1029 aaKnown RBP24.85■■□□□ 1.57
CCDC43-204ENST00000588687 HTRA3P83110 453 aa24.85■■□□□ 1.57
CCDC43-204ENST00000588687 TBC1D9BQ66K14 1250 aa24.85■■□□□ 1.57
CCDC43-204ENST00000588687 TTLL6Q8N841 843 aa24.85■■□□□ 1.57
CCDC43-204ENST00000588687 RRAGCQ9HB90 399 aa24.85■■□□□ 1.57
CCDC43-204ENST00000588687 ARFGEF2Q9Y6D5 1785 aa24.85■■□□□ 1.57
CCDC43-204ENST00000588687 LMNB1P20700 586 aa24.84■■□□□ 1.57
CCDC43-204ENST00000588687 TEFQ10587 303 aa24.84■■□□□ 1.57
CCDC43-204ENST00000588687 C2CD5Q86YS7 1000 aa24.84■■□□□ 1.57
CCDC43-204ENST00000588687 DICER1Q9UPY3 1922 aaKnown RBP24.84■■□□□ 1.57
CCDC43-204ENST00000588687 A0A087WZG4 1122 aa24.83■■□□□ 1.57
CCDC43-204ENST00000588687 C16orf71Q8IYS4 520 aaPredicted RBP24.83■■□□□ 1.57
CCDC43-204ENST00000588687 IL6STP40189 918 aaPredicted RBP24.82■■□□□ 1.56
CCDC43-204ENST00000588687 BICDL1Q6ZP65 573 aa24.82■■□□□ 1.56
CCDC43-204ENST00000588687 PHACTR3Q96KR7 559 aa24.82■■□□□ 1.56
CCDC43-204ENST00000588687 RSPH6AQ9H0K4 717 aa24.82■■□□□ 1.56
CCDC43-204ENST00000588687 PRR5LQ6MZQ0 368 aa24.81■■□□□ 1.56
CCDC43-204ENST00000588687 H0YIN7 160 aa24.8■■□□□ 1.56
CCDC43-204ENST00000588687 KCNQ3O43525 872 aa24.8■■□□□ 1.56
CCDC43-204ENST00000588687 CAMTA2O94983 1202 aa24.8■■□□□ 1.56
CCDC43-204ENST00000588687 TEX13AQ9BXU3 409 aaPredicted RBP24.8■■□□□ 1.56
CCDC43-204ENST00000588687 TBC1D2BQ9UPU7 963 aa24.8■■□□□ 1.56
CCDC43-204ENST00000588687 CACNA1SQ13698 1873 aa24.8■■□□□ 1.56
CCDC43-204ENST00000588687 GLTPD2A6NH11 291 aa24.79■■□□□ 1.56
CCDC43-204ENST00000588687 JMYQ8N9B5 988 aa24.79■■□□□ 1.56
CCDC43-204ENST00000588687 KLRG1Q96E93 195 aa24.79■■□□□ 1.56
CCDC43-204ENST00000588687 FMNL2Q96PY5 1086 aa24.79■■□□□ 1.56
CCDC43-204ENST00000588687 SLX4Q8IY92 1834 aa24.78■■□□□ 1.56
CCDC43-204ENST00000588687 A1BGP04217 495 aa24.78■■□□□ 1.56
CCDC43-204ENST00000588687 PRKAR2BP31323 418 aa24.78■■□□□ 1.56
CCDC43-204ENST00000588687 BRIP1Q9BX63 1249 aa24.78■■□□□ 1.56
CCDC43-204ENST00000588687 CNGB1Q14028 1251 aaPredicted RBP24.77■■□□□ 1.56
CCDC43-204ENST00000588687 CCDC24Q8N4L8 307 aa24.76■■□□□ 1.55
CCDC43-204ENST00000588687 SMC1BQ8NDV3 1235 aa24.76■■□□□ 1.55
CCDC43-204ENST00000588687 ZNF330Q9Y3S2 320 aaPredicted RBP24.75■■□□□ 1.55
CCDC43-204ENST00000588687 POTECB2RU33 542 aa24.74■■□□□ 1.55
CCDC43-204ENST00000588687 PDE6BP35913 854 aa24.74■■□□□ 1.55
CCDC43-204ENST00000588687 PDZRN3Q9UPQ7 1066 aa24.74■■□□□ 1.55
CCDC43-204ENST00000588687 LAMB4A4D0S4 1761 aa24.74■■□□□ 1.55
CCDC43-204ENST00000588687 LTBP3Q9NS15 1303 aa24.73■■□□□ 1.55
CCDC43-204ENST00000588687 PRAMEF22A3QJZ6 481 aa24.73■■□□□ 1.55
CCDC43-204ENST00000588687 BTBD11A6QL63 1104 aa24.73■■□□□ 1.55
CCDC43-204ENST00000588687 VEGFAP15692 232 aaPredicted RBP24.72■■□□□ 1.55
CCDC43-204ENST00000588687 USP16Q9Y5T5 823 aa24.72■■□□□ 1.55
CCDC43-204ENST00000588687 C21orf2O43822 256 aa24.71■■□□□ 1.55
CCDC43-204ENST00000588687 PIP4K2AP48426 406 aaPredicted RBP24.71■■□□□ 1.55
CCDC43-204ENST00000588687 CNBD1Q8NA66 436 aa24.71■■□□□ 1.55
CCDC43-204ENST00000588687 ZNF622Q969S3 477 aaKnown RBP eCLIP24.71■■□□□ 1.55
CCDC43-204ENST00000588687 SRGNP10124 158 aa24.7■■□□□ 1.54
CCDC43-204ENST00000588687 DZIP3Q86Y13 1208 aaKnown RBP24.7■■□□□ 1.54
CCDC43-204ENST00000588687 PPP2R1AP30153 589 aa24.69■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms