RNA–Protein interactions for RNA: ENST00000586417.5

ATG4D-204, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 2

Gene ATG4D, Length 1,752 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-204ENST00000586417 ATG3Q9NT62 314 aa25.97■■□□□ 1.75
ATG4D-204ENST00000586417 NHSQ6T4R5 1651 aa25.97■■□□□ 1.75
ATG4D-204ENST00000586417 IGHDP01880 384 aa25.96■■□□□ 1.75
ATG4D-204ENST00000586417 FAM196AQ6ZSG2 479 aa25.96■■□□□ 1.75
ATG4D-204ENST00000586417 ZNF496Q96IT1 587 aaPredicted RBP25.95■■□□□ 1.74
ATG4D-204ENST00000586417 UBR2Q8IWV8 1755 aa25.94■■□□□ 1.74
ATG4D-204ENST00000586417 BTAF1O14981 1849 aa25.94■■□□□ 1.74
ATG4D-204ENST00000586417 TTC5Q8N0Z6 440 aa25.94■■□□□ 1.74
ATG4D-204ENST00000586417 PTPRCP08575 1304 aa25.93■■□□□ 1.74
ATG4D-204ENST00000586417 KCPQ6ZWJ8 1503 aa25.93■■□□□ 1.74
ATG4D-204ENST00000586417 PTCD1O75127 700 aaKnown RBP25.92■■□□□ 1.74
ATG4D-204ENST00000586417 SLC4A2P04920 1241 aa25.92■■□□□ 1.74
ATG4D-204ENST00000586417 ZBTB40Q9NUA8 1239 aa25.92■■□□□ 1.74
ATG4D-204ENST00000586417 PRAMEF22A3QJZ6 481 aa25.92■■□□□ 1.74
ATG4D-204ENST00000586417 HEG1Q9ULI3 1381 aa25.91■■□□□ 1.74
ATG4D-204ENST00000586417 TRIM37O94972 964 aa25.91■■□□□ 1.74
ATG4D-204ENST00000586417 CCDC30Q5VVM6 783 aa25.9■■□□□ 1.74
ATG4D-204ENST00000586417 HOXB7P09629 217 aa25.9■■□□□ 1.74
ATG4D-204ENST00000586417 CACNA1FO60840 1977 aa25.89■■□□□ 1.74
ATG4D-204ENST00000586417 G2E3Q7L622 706 aa25.89■■□□□ 1.73
ATG4D-204ENST00000586417 C5P01031 1676 aa25.88■■□□□ 1.73
ATG4D-204ENST00000586417 ZBTB7BO15156 539 aaPredicted RBP25.88■■□□□ 1.73
ATG4D-204ENST00000586417 GIGYF1O75420 1035 aaPredicted RBP25.88■■□□□ 1.73
ATG4D-204ENST00000586417 FMNL2Q96PY5 1086 aa25.88■■□□□ 1.73
ATG4D-204ENST00000586417 STK31Q9BXU1 1019 aa25.88■■□□□ 1.73
ATG4D-204ENST00000586417 BCL11BQ9C0K0 894 aaPredicted RBP25.88■■□□□ 1.73
ATG4D-204ENST00000586417 SKAP1Q86WV1 359 aa25.87■■□□□ 1.73
ATG4D-204ENST00000586417 INTS3Q68E01 1043 aaKnown RBP25.87■■□□□ 1.73
ATG4D-204ENST00000586417 SLC4A9Q96Q91 983 aa25.87■■□□□ 1.73
ATG4D-204ENST00000586417 RBM42Q9BTD8 480 aaKnown RBP25.87■■□□□ 1.73
ATG4D-204ENST00000586417 HDGFL1Q5TGJ6 251 aa25.85■■□□□ 1.73
ATG4D-204ENST00000586417 NECTIN2Q92692 538 aa25.84■■□□□ 1.73
ATG4D-204ENST00000586417 PALLDQ8WX93 1383 aa25.84■■□□□ 1.73
ATG4D-204ENST00000586417 CHMP4BQ9H444 224 aaKnown RBP25.83■■□□□ 1.73
ATG4D-204ENST00000586417 RWDD1Q9H446 243 aaPredicted RBP25.83■■□□□ 1.73
ATG4D-204ENST00000586417 SNRPA1P09661 255 aaKnown RBP25.82■■□□□ 1.72
ATG4D-204ENST00000586417 EIF2S2P20042 333 aaKnown RBP25.82■■□□□ 1.72
ATG4D-204ENST00000586417 USP16Q9Y5T5 823 aa25.82■■□□□ 1.72
ATG4D-204ENST00000586417 FLIIQ13045 1269 aa25.82■■□□□ 1.72
ATG4D-204ENST00000586417 HDAC1Q13547 482 aaPredicted RBP25.82■■□□□ 1.72
ATG4D-204ENST00000586417 SMARCC1Q92922 1105 aaPredicted RBP25.82■■□□□ 1.72
ATG4D-204ENST00000586417 LOC102724428A0A0B4J2F2 783 aa25.79■■□□□ 1.72
ATG4D-204ENST00000586417 KCNQ4P56696 695 aa25.79■■□□□ 1.72
ATG4D-204ENST00000586417 SIK1P57059 783 aa25.79■■□□□ 1.72
ATG4D-204ENST00000586417 CHMP4AQ9BY43 222 aa25.79■■□□□ 1.72
ATG4D-204ENST00000586417 DNAJC10Q8IXB1 793 aa25.79■■□□□ 1.72
ATG4D-204ENST00000586417 LY75O60449 1722 aa25.78■■□□□ 1.72
ATG4D-204ENST00000586417 TJP1Q07157 1748 aa25.78■■□□□ 1.72
ATG4D-204ENST00000586417 TNS1Q9HBL0 1735 aaKnown RBP25.78■■□□□ 1.72
ATG4D-204ENST00000586417 VSIG10Q8N0Z9 540 aa25.77■■□□□ 1.72
ATG4D-204ENST00000586417 LAMB4A4D0S4 1761 aa25.77■■□□□ 1.72
ATG4D-204ENST00000586417 N4BP2Q86UW6 1770 aaPredicted RBP25.77■■□□□ 1.72
ATG4D-204ENST00000586417 F6X3S4 739 aa25.77■■□□□ 1.72
ATG4D-204ENST00000586417 ATP6V1AP38606 617 aa25.77■■□□□ 1.72
ATG4D-204ENST00000586417 CHPF2Q9P2E5 772 aa25.77■■□□□ 1.72
ATG4D-204ENST00000586417 ITPK1Q13572 414 aa25.76■■□□□ 1.71
ATG4D-204ENST00000586417 FKBP5Q13451 457 aaPredicted RBP25.75■■□□□ 1.71
ATG4D-204ENST00000586417 APBA3O96018 575 aa25.74■■□□□ 1.71
ATG4D-204ENST00000586417 PIP4K2AP48426 406 aaPredicted RBP25.74■■□□□ 1.71
ATG4D-204ENST00000586417 C1orf115Q9H7X2 142 aa25.74■■□□□ 1.71
ATG4D-204ENST00000586417 PHAXQ9H814 394 aaKnown RBP25.74■■□□□ 1.71
ATG4D-204ENST00000586417 RBM19Q9Y4C8 960 aaKnown RBP25.74■■□□□ 1.71
ATG4D-204ENST00000586417 ANXA1P04083 346 aa25.74■■□□□ 1.71
ATG4D-204ENST00000586417 PXDNLA1KZ92 1463 aa25.74■■□□□ 1.71
ATG4D-204ENST00000586417 CCT4P50991 539 aaKnown RBP25.73■■□□□ 1.71
ATG4D-204ENST00000586417 PROSER3Q2NL68 480 aa25.72■■□□□ 1.71
ATG4D-204ENST00000586417 ZNF831Q5JPB2 1677 aa25.72■■□□□ 1.71
ATG4D-204ENST00000586417 A1BGP04217 495 aa25.72■■□□□ 1.71
ATG4D-204ENST00000586417 CYP19A1P11511 503 aaPredicted RBP25.72■■□□□ 1.71
ATG4D-204ENST00000586417 PDIA6Q15084 440 aa25.72■■□□□ 1.71
ATG4D-204ENST00000586417 DBF4Q9UBU7 674 aaPredicted RBP25.72■■□□□ 1.71
ATG4D-204ENST00000586417 SLC4A10Q6U841 1118 aa25.71■■□□□ 1.71
ATG4D-204ENST00000586417 SMC5Q8IY18 1101 aa25.71■■□□□ 1.71
ATG4D-204ENST00000586417 TEX13AQ9BXU3 409 aaPredicted RBP25.71■■□□□ 1.71
ATG4D-204ENST00000586417 CCNL1Q9UK58 526 aaPredicted RBP25.71■■□□□ 1.71
ATG4D-204ENST00000586417 CICQ96RK0 1608 aaPredicted RBP25.71■■□□□ 1.71
ATG4D-204ENST00000586417 SIRT2Q8IXJ6 389 aa25.7■■□□□ 1.7
ATG4D-204ENST00000586417 PROM2Q8N271 834 aa25.7■■□□□ 1.7
ATG4D-204ENST00000586417 LRRC4BQ9NT99 713 aa25.7■■□□□ 1.7
ATG4D-204ENST00000586417 PDZRN3Q9UPQ7 1066 aa25.7■■□□□ 1.7
ATG4D-204ENST00000586417 COL5A3P25940 1745 aaPredicted RBP25.7■■□□□ 1.7
ATG4D-204ENST00000586417 ATP10DQ9P241 1426 aa25.7■■□□□ 1.7
ATG4D-204ENST00000586417 NBPF26B4DH59 902 aa25.69■■□□□ 1.7
ATG4D-204ENST00000586417 NBPF14Q5TI25 921 aa25.69■■□□□ 1.7
ATG4D-204ENST00000586417 NBPF10Q6P3W6 841 aaKnown RBP25.69■■□□□ 1.7
ATG4D-204ENST00000586417 NBPF15Q8N660 670 aa25.69■■□□□ 1.7
ATG4D-204ENST00000586417 MEIS3Q99687 375 aa25.69■■□□□ 1.7
ATG4D-204ENST00000586417 MYH14Q7Z406 1995 aaKnown RBP25.69■■□□□ 1.7
ATG4D-204ENST00000586417 TAF1LQ8IZX4 1826 aa25.69■■□□□ 1.7
ATG4D-204ENST00000586417 STARD3NLO95772 234 aa25.69■■□□□ 1.7
ATG4D-204ENST00000586417 RGS3P49796 1198 aa25.69■■□□□ 1.7
ATG4D-204ENST00000586417 LINC00116Q8NCU8 138 aa25.69■■□□□ 1.7
ATG4D-204ENST00000586417 PLSCR1O15162 318 aa25.68■■□□□ 1.7
ATG4D-204ENST00000586417 MYL6BP14649 208 aa25.68■■□□□ 1.7
ATG4D-204ENST00000586417 TXNRD1Q16881 649 aa25.66■■□□□ 1.7
ATG4D-204ENST00000586417 DDX21Q9NR30 783 aaKnown RBP eCLIP25.66■■□□□ 1.7
ATG4D-204ENST00000586417 CRKLP46109 303 aaKnown RBP25.65■■□□□ 1.7
ATG4D-204ENST00000586417 LRP10Q7Z4F1 713 aa25.65■■□□□ 1.7
ATG4D-204ENST00000586417 INTS5Q6P9B9 1019 aaKnown RBP25.64■■□□□ 1.7
ATG4D-204ENST00000586417 ZBTB1Q9Y2K1 713 aa25.64■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms