RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 DCTN1Q14203 1278 aa16.37■□□□□ 0.21
SS18-225ENST00000585121 FKBP8Q14318 412 aa16.37■□□□□ 0.21
SS18-225ENST00000585121 TAF7Q15545 349 aaPredicted RBP16.37■□□□□ 0.21
SS18-225ENST00000585121 USPL1Q5W0Q7 1092 aa16.37■□□□□ 0.21
SS18-225ENST00000585121 COL15A1P39059 1388 aa16.37■□□□□ 0.21
SS18-225ENST00000585121 YBX3P16989 372 aaKnown RBP eCLIP16.36■□□□□ 0.21
SS18-225ENST00000585121 TGFB2P61812 414 aa16.36■□□□□ 0.21
SS18-225ENST00000585121 NFE2L2Q16236 605 aa16.36■□□□□ 0.21
SS18-225ENST00000585121 PLEKHF1Q96S99 279 aa16.36■□□□□ 0.21
SS18-225ENST00000585121 NARFQ9UHQ1 456 aa16.36■□□□□ 0.21
SS18-225ENST00000585121 VIRMAQ69YN4 1812 aaKnown RBP16.35■□□□□ 0.21
SS18-225ENST00000585121 GOLGB1Q14789 3259 aaKnown RBP16.35■□□□□ 0.21
SS18-225ENST00000585121 KCNQ3O43525 872 aa16.35■□□□□ 0.21
SS18-225ENST00000585121 PNISRQ8TF01 805 aaKnown RBP16.35■□□□□ 0.21
SS18-225ENST00000585121 ZNF330Q9Y3S2 320 aaPredicted RBP16.35■□□□□ 0.21
SS18-225ENST00000585121 SNRPA1P09661 255 aaKnown RBP16.34■□□□□ 0.21
SS18-225ENST00000585121 EIF5P55010 431 aaKnown RBP16.34■□□□□ 0.21
SS18-225ENST00000585121 WDR43Q15061 677 aaKnown RBP eCLIP16.34■□□□□ 0.21
SS18-225ENST00000585121 IL6STP40189 918 aaPredicted RBP16.33■□□□□ 0.2
SS18-225ENST00000585121 TM4SF1P30408 202 aa16.32■□□□□ 0.2
SS18-225ENST00000585121 UBR2Q8IWV8 1755 aa16.32■□□□□ 0.2
SS18-225ENST00000585121 C10orf71Q711Q0 1435 aa16.32■□□□□ 0.2
SS18-225ENST00000585121 A1BGP04217 495 aa16.31■□□□□ 0.2
SS18-225ENST00000585121 PRKRIP1Q9H875 184 aaPredicted RBP16.31■□□□□ 0.2
SS18-225ENST00000585121 WWC3Q9ULE0 1092 aa16.31■□□□□ 0.2
SS18-225ENST00000585121 A0A0G2JLW4 131 aa16.3■□□□□ 0.2
SS18-225ENST00000585121 POLRMTO00411 1230 aaKnown RBP16.3■□□□□ 0.2
SS18-225ENST00000585121 RIPK4P57078 832 aa16.3■□□□□ 0.2
SS18-225ENST00000585121 DDR1Q08345 913 aa16.3■□□□□ 0.2
SS18-225ENST00000585121 LMOD3Q0VAK6 560 aa16.3■□□□□ 0.2
SS18-225ENST00000585121 ZNF784Q8NCA9 323 aaPredicted RBP16.3■□□□□ 0.2
SS18-225ENST00000585121 MIS18AQ9NYP9 233 aa16.3■□□□□ 0.2
SS18-225ENST00000585121 USP16Q9Y5T5 823 aa16.3■□□□□ 0.2
SS18-225ENST00000585121 C4AP0C0L4 1744 aa16.3■□□□□ 0.2
SS18-225ENST00000585121 SIPA1L3O60292 1781 aaPredicted RBP16.3■□□□□ 0.2
SS18-225ENST00000585121 DPEP1P16444 411 aa16.29■□□□□ 0.2
SS18-225ENST00000585121 NFIXQ14938 502 aa16.29■□□□□ 0.2
SS18-225ENST00000585121 TBC1D2BQ9UPU7 963 aa16.29■□□□□ 0.2
SS18-225ENST00000585121 BCS1LQ9Y276 419 aa16.29■□□□□ 0.2
SS18-225ENST00000585121 PXDNLA1KZ92 1463 aa16.28■□□□□ 0.2
SS18-225ENST00000585121 CHD4Q14839 1912 aa16.28■□□□□ 0.2
SS18-225ENST00000585121 SERPINB2P05120 415 aa16.28■□□□□ 0.2
SS18-225ENST00000585121 BICDL1Q6ZP65 573 aa16.28■□□□□ 0.2
SS18-225ENST00000585121 BCL2L12Q9HB09 334 aa16.28■□□□□ 0.2
SS18-225ENST00000585121 TMPOP42166 694 aaKnown RBP16.27■□□□□ 0.2
SS18-225ENST00000585121 DZIP3Q86Y13 1208 aaKnown RBP16.27■□□□□ 0.2
SS18-225ENST00000585121 RUNDC1Q96C34 613 aa16.27■□□□□ 0.2
SS18-225ENST00000585121 THUMPD2Q9BTF0 503 aaKnown RBP16.27■□□□□ 0.2
SS18-225ENST00000585121 PIM2Q9P1W9 311 aa16.27■□□□□ 0.2
SS18-225ENST00000585121 PRAMEF22A3QJZ6 481 aa16.26■□□□□ 0.19
SS18-225ENST00000585121 CCDC146Q8IYE0 955 aa16.25■□□□□ 0.19
SS18-225ENST00000585121 TSPYL4Q9UJ04 414 aa16.25■□□□□ 0.19
SS18-225ENST00000585121 NPHP1O15259 732 aa16.24■□□□□ 0.19
SS18-225ENST00000585121 PIP4K2AP48426 406 aaPredicted RBP16.24■□□□□ 0.19
SS18-225ENST00000585121 EIF4A1P60842 406 aaKnown RBP16.24■□□□□ 0.19
SS18-225ENST00000585121 NEUROD2Q15784 382 aa16.24■□□□□ 0.19
SS18-225ENST00000585121 DALRD3Q5D0E6 543 aaKnown RBP16.24■□□□□ 0.19
SS18-225ENST00000585121 TBC1D9BQ66K14 1250 aa16.24■□□□□ 0.19
SS18-225ENST00000585121 SETDB2Q96T68 719 aa16.24■□□□□ 0.19
SS18-225ENST00000585121 ZNF652Q9Y2D9 606 aa16.24■□□□□ 0.19
SS18-225ENST00000585121 CAMTA2O94983 1202 aa16.24■□□□□ 0.19
SS18-225ENST00000585121 BABAM1Q9NWV8 329 aa16.24■□□□□ 0.19
SS18-225ENST00000585121 ADAMTS8Q9UP79 889 aa16.24■□□□□ 0.19
SS18-225ENST00000585121 KIF13BQ9NQT8 1826 aa16.23■□□□□ 0.19
SS18-225ENST00000585121 ZNF316A6NFI3 1004 aaPredicted RBP16.23■□□□□ 0.19
SS18-225ENST00000585121 GIGYF1O75420 1035 aaPredicted RBP16.23■□□□□ 0.19
SS18-225ENST00000585121 CLEC4GQ6UXB4 293 aa16.23■□□□□ 0.19
SS18-225ENST00000585121 ARHGAP27Q6ZUM4 889 aa16.23■□□□□ 0.19
SS18-225ENST00000585121 RRP7AQ9Y3A4 280 aaKnown RBP16.23■□□□□ 0.19
SS18-225ENST00000585121 KCNA3P22001 575 aa16.22■□□□□ 0.19
SS18-225ENST00000585121 CHRNA5P30532 468 aa16.22■□□□□ 0.19
SS18-225ENST00000585121 CARMIL3Q8ND23 1372 aa16.22■□□□□ 0.19
SS18-225ENST00000585121 PDZRN3Q9UPQ7 1066 aa16.21■□□□□ 0.19
SS18-225ENST00000585121 NBPF26B4DH59 902 aa16.2■□□□□ 0.18
SS18-225ENST00000585121 H0YIN7 160 aa16.2■□□□□ 0.18
SS18-225ENST00000585121 RGL2O15211 777 aa16.2■□□□□ 0.18
SS18-225ENST00000585121 NBPF10Q6P3W6 841 aaKnown RBP16.2■□□□□ 0.18
SS18-225ENST00000585121 NBPF15Q8N660 670 aa16.2■□□□□ 0.18
SS18-225ENST00000585121 DLG5Q8TDM6 1919 aa16.2■□□□□ 0.18
SS18-225ENST00000585121 PDE6BP35913 854 aa16.19■□□□□ 0.18
SS18-225ENST00000585121 ST5P78524 1137 aa16.19■□□□□ 0.18
SS18-225ENST00000585121 C2CD5Q86YS7 1000 aa16.19■□□□□ 0.18
SS18-225ENST00000585121 CNBD1Q8NA66 436 aa16.19■□□□□ 0.18
SS18-225ENST00000585121 N4BP2Q86UW6 1770 aaPredicted RBP16.19■□□□□ 0.18
SS18-225ENST00000585121 NGEFQ8N5V2 710 aa16.19■□□□□ 0.18
SS18-225ENST00000585121 BRIP1Q9BX63 1249 aa16.19■□□□□ 0.18
SS18-225ENST00000585121 LAS1LQ9Y4W2 734 aaKnown RBP16.19■□□□□ 0.18
SS18-225ENST00000585121 PRR5LQ6MZQ0 368 aa16.18■□□□□ 0.18
SS18-225ENST00000585121 KIF6Q6ZMV9 814 aa16.18■□□□□ 0.18
SS18-225ENST00000585121 NBPF5PQ86XG9 351 aaPredicted RBP16.18■□□□□ 0.18
SS18-225ENST00000585121 TTLL6Q8N841 843 aa16.18■□□□□ 0.18
SS18-225ENST00000585121 ERBB4Q15303 1308 aa16.17■□□□□ 0.18
SS18-225ENST00000585121 MYL6BP14649 208 aa16.17■□□□□ 0.18
SS18-225ENST00000585121 NIP7Q9Y221 180 aaKnown RBP eCLIP16.17■□□□□ 0.18
SS18-225ENST00000585121 KIAA1551Q9HCM1 1747 aa16.17■□□□□ 0.18
SS18-225ENST00000585121 ATP10DQ9P241 1426 aa16.17■□□□□ 0.18
SS18-225ENST00000585121 ANP32CO43423 234 aa16.16■□□□□ 0.18
SS18-225ENST00000585121 EIF2S2P20042 333 aaKnown RBP16.16■□□□□ 0.18
SS18-225ENST00000585121 TPTE2Q6XPS3 522 aa16.16■□□□□ 0.18
SS18-225ENST00000585121 ZNF622Q969S3 477 aaKnown RBP eCLIP16.16■□□□□ 0.184e-7■□□□□ 10.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms