RNA–Protein interactions for RNA: ENST00000581662.1

CDK5RAP3-221, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 2

Gene CDK5RAP3, Length 557 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-221ENST00000581662 NLRP13Q86W25 1043 aa11.64□□□□□ -0.55
CDK5RAP3-221ENST00000581662 NUDT16Q96DE0 195 aaKnown RBP11.64□□□□□ -0.55
CDK5RAP3-221ENST00000581662 TNRC6CQ9HCJ0 1690 aaKnown RBP11.63□□□□□ -0.55
CDK5RAP3-221ENST00000581662 CTCFP49711 727 aaPredicted RBP11.63□□□□□ -0.55
CDK5RAP3-221ENST00000581662 TNRC18O15417 2968 aaPredicted RBP11.63□□□□□ -0.55
CDK5RAP3-221ENST00000581662 LY75O60449 1722 aa11.63□□□□□ -0.55
CDK5RAP3-221ENST00000581662 KDM2BQ8NHM5 1336 aa11.62□□□□□ -0.55
CDK5RAP3-221ENST00000581662 ZNF454Q8N9F8 522 aa11.62□□□□□ -0.55
CDK5RAP3-221ENST00000581662 CFAP44Q96MT7 982 aa11.62□□□□□ -0.55
CDK5RAP3-221ENST00000581662 KIAA1551Q9HCM1 1747 aa11.61□□□□□ -0.55
CDK5RAP3-221ENST00000581662 PLEKHG3A1L390 1219 aa11.61□□□□□ -0.55
CDK5RAP3-221ENST00000581662 ZBTB7CA1YPR0 619 aa11.61□□□□□ -0.55
CDK5RAP3-221ENST00000581662 EVI5O60447 810 aa11.61□□□□□ -0.55
CDK5RAP3-221ENST00000581662 C9orf131Q5VYM1 1079 aa11.61□□□□□ -0.55
CDK5RAP3-221ENST00000581662 PAXIP1Q6ZW49 1069 aaPredicted RBP11.61□□□□□ -0.55
CDK5RAP3-221ENST00000581662 RRAGCQ9HB90 399 aa11.61□□□□□ -0.55
CDK5RAP3-221ENST00000581662 NSD2O96028 1365 aa11.61□□□□□ -0.55
CDK5RAP3-221ENST00000581662 PKD1L3Q7Z443 1732 aa11.6□□□□□ -0.55
CDK5RAP3-221ENST00000581662 USP54Q70EL1 1684 aa11.6□□□□□ -0.55
CDK5RAP3-221ENST00000581662 PSEN2P49810 448 aa11.6□□□□□ -0.55
CDK5RAP3-221ENST00000581662 LBX1P52954 281 aa11.59□□□□□ -0.55
CDK5RAP3-221ENST00000581662 KCNK17Q96T54 332 aa11.59□□□□□ -0.55
CDK5RAP3-221ENST00000581662 CCDC85CA6NKD9 419 aa11.58□□□□□ -0.56
CDK5RAP3-221ENST00000581662 PPARGC1BQ86YN6 1023 aaKnown RBP11.58□□□□□ -0.56
CDK5RAP3-221ENST00000581662 CCNL1Q9UK58 526 aaPredicted RBP11.58□□□□□ -0.56
CDK5RAP3-221ENST00000581662 CSB-PGBD3P0DP91 1061 aa11.57□□□□□ -0.56
CDK5RAP3-221ENST00000581662 ARHGEF25Q86VW2 580 aa11.57□□□□□ -0.56
CDK5RAP3-221ENST00000581662 EMILIN3Q9NT22 766 aa11.57□□□□□ -0.56
CDK5RAP3-221ENST00000581662 MKRN1Q9UHC7 482 aaKnown RBP11.57□□□□□ -0.56
CDK5RAP3-221ENST00000581662 TRAK1Q9UPV9 953 aa11.57□□□□□ -0.56
CDK5RAP3-221ENST00000581662 CNTNAP1P78357 1384 aa11.56□□□□□ -0.56
CDK5RAP3-221ENST00000581662 HSPA8P11142 646 aaKnown RBP11.56□□□□□ -0.56
CDK5RAP3-221ENST00000581662 DMRTA1Q5VZB9 504 aa11.56□□□□□ -0.56
CDK5RAP3-221ENST00000581662 ADGRD1Q6QNK2 874 aa11.56□□□□□ -0.56
CDK5RAP3-221ENST00000581662 ARHGAP27Q6ZUM4 889 aa11.56□□□□□ -0.56
CDK5RAP3-221ENST00000581662 FLAD1Q8NFF5 587 aa11.56□□□□□ -0.56
CDK5RAP3-221ENST00000581662 AIDAQ96BJ3 306 aa11.56□□□□□ -0.56
CDK5RAP3-221ENST00000581662 WBP1LQ9NX94 342 aa11.56□□□□□ -0.56
CDK5RAP3-221ENST00000581662 BCS1LQ9Y276 419 aa11.56□□□□□ -0.56
CDK5RAP3-221ENST00000581662 ANKRD36BQ8N2N9 1353 aa11.55□□□□□ -0.56
CDK5RAP3-221ENST00000581662 AMIGO3Q86WK7 504 aa11.55□□□□□ -0.56
CDK5RAP3-221ENST00000581662 TOGARAM1Q9Y4F4 1720 aa11.55□□□□□ -0.56
CDK5RAP3-221ENST00000581662 KIF13BQ9NQT8 1826 aa11.54□□□□□ -0.56
CDK5RAP3-221ENST00000581662 IL2RBP14784 551 aa11.54□□□□□ -0.56
CDK5RAP3-221ENST00000581662 FOSBP53539 338 aa11.54□□□□□ -0.56
CDK5RAP3-221ENST00000581662 STAC3Q96MF2 364 aa11.54□□□□□ -0.56
CDK5RAP3-221ENST00000581662 ITGAEP38570 1179 aa11.53□□□□□ -0.56
CDK5RAP3-221ENST00000581662 RGPD5Q99666 1765 aa11.53□□□□□ -0.56
CDK5RAP3-221ENST00000581662 C5P01031 1676 aa11.52□□□□□ -0.56
CDK5RAP3-221ENST00000581662 NFAT5O94916 1531 aa11.52□□□□□ -0.57
CDK5RAP3-221ENST00000581662 CDK19Q9BWU1 502 aa11.52□□□□□ -0.57
CDK5RAP3-221ENST00000581662 RNF181Q9P0P0 153 aa11.52□□□□□ -0.57
CDK5RAP3-221ENST00000581662 TK2O00142 265 aa11.51□□□□□ -0.57
CDK5RAP3-221ENST00000581662 PRIM1P49642 420 aaKnown RBP11.51□□□□□ -0.57
CDK5RAP3-221ENST00000581662 TGFB2P61812 414 aa11.51□□□□□ -0.57
CDK5RAP3-221ENST00000581662 DOT1LQ8TEK3 1739 aa11.5□□□□□ -0.57
CDK5RAP3-221ENST00000581662 VEGFAP15692 232 aaPredicted RBP11.5□□□□□ -0.57
CDK5RAP3-221ENST00000581662 PTPREP23469 700 aa11.5□□□□□ -0.57
CDK5RAP3-221ENST00000581662 PRPF38BQ5VTL8 546 aaKnown RBP11.5□□□□□ -0.57
CDK5RAP3-221ENST00000581662 SMIM5Q71RC9 77 aa11.5□□□□□ -0.57
CDK5RAP3-221ENST00000581662 ZDHHC16Q969W1 377 aa11.5□□□□□ -0.57
CDK5RAP3-221ENST00000581662 BCL2L12Q9HB09 334 aa11.5□□□□□ -0.57
CDK5RAP3-221ENST00000581662 ZC3H4Q9UPT8 1303 aaKnown RBP11.5□□□□□ -0.57
CDK5RAP3-221ENST00000581662 N4BP2Q86UW6 1770 aaPredicted RBP11.49□□□□□ -0.57
CDK5RAP3-221ENST00000581662 BRCA1P38398 1863 aaKnown RBP11.49□□□□□ -0.57
CDK5RAP3-221ENST00000581662 A0A0G2JLW4 131 aa11.49□□□□□ -0.57
CDK5RAP3-221ENST00000581662 DPYSL4O14531 572 aa11.49□□□□□ -0.57
CDK5RAP3-221ENST00000581662 VEGFBP49765 207 aa11.49□□□□□ -0.57
CDK5RAP3-221ENST00000581662 KDM6AO15550 1401 aaPredicted RBP11.49□□□□□ -0.57
CDK5RAP3-221ENST00000581662 FCHSD2O94868 740 aa11.48□□□□□ -0.57
CDK5RAP3-221ENST00000581662 CAMK2BQ13554 666 aa11.48□□□□□ -0.57
CDK5RAP3-221ENST00000581662 SYTL4Q96C24 671 aaPredicted RBP11.48□□□□□ -0.57
CDK5RAP3-221ENST00000581662 DCAF5Q96JK2 942 aa11.48□□□□□ -0.57
CDK5RAP3-221ENST00000581662 WDR70Q9NW82 654 aa11.48□□□□□ -0.57
CDK5RAP3-221ENST00000581662 ARFGEF1Q9Y6D6 1849 aa11.47□□□□□ -0.57
CDK5RAP3-221ENST00000581662 USP47Q96K76 1375 aa11.47□□□□□ -0.57
CDK5RAP3-221ENST00000581662 DPEP1P16444 411 aa11.47□□□□□ -0.57
CDK5RAP3-221ENST00000581662 VIRMAQ69YN4 1812 aaKnown RBP11.46□□□□□ -0.57
CDK5RAP3-221ENST00000581662 C4BP0C0L5 1744 aa11.46□□□□□ -0.57
CDK5RAP3-221ENST00000581662 GLTPD2A6NH11 291 aa11.46□□□□□ -0.57
CDK5RAP3-221ENST00000581662 POTECB2RU33 542 aa11.46□□□□□ -0.57
CDK5RAP3-221ENST00000581662 KCNA3P22001 575 aa11.46□□□□□ -0.57
CDK5RAP3-221ENST00000581662 KCNH5Q8NCM2 988 aa11.46□□□□□ -0.57
CDK5RAP3-221ENST00000581662 ADAM33Q9BZ11 813 aa11.46□□□□□ -0.57
CDK5RAP3-221ENST00000581662 NLRP2Q9NX02 1062 aa11.46□□□□□ -0.57
CDK5RAP3-221ENST00000581662 NSD3Q9BZ95 1437 aa11.45□□□□□ -0.58
CDK5RAP3-221ENST00000581662 UBR3Q6ZT12 1888 aa11.45□□□□□ -0.58
CDK5RAP3-221ENST00000581662 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.45□□□□□ -0.58
CDK5RAP3-221ENST00000581662 DDX54Q8TDD1 881 aaKnown RBP11.45□□□□□ -0.58
CDK5RAP3-221ENST00000581662 KAT6BQ8WYB5 2073 aa11.45□□□□□ -0.58
CDK5RAP3-221ENST00000581662 TAF1LQ8IZX4 1826 aa11.44□□□□□ -0.58
CDK5RAP3-221ENST00000581662 PASKQ96RG2 1323 aa11.44□□□□□ -0.58
CDK5RAP3-221ENST00000581662 MMP10P09238 476 aa11.44□□□□□ -0.58
CDK5RAP3-221ENST00000581662 VPS9D1Q9Y2B5 631 aa11.44□□□□□ -0.58
CDK5RAP3-221ENST00000581662 HRO43593 1189 aa11.43□□□□□ -0.58
CDK5RAP3-221ENST00000581662 PHF14O94880 888 aa11.43□□□□□ -0.58
CDK5RAP3-221ENST00000581662 HMGB2P26583 209 aaKnown RBP11.43□□□□□ -0.58
CDK5RAP3-221ENST00000581662 SSFA2P28290 1259 aa11.43□□□□□ -0.58
CDK5RAP3-221ENST00000581662 PCDHGA10Q9Y5H3 936 aa11.43□□□□□ -0.58
CDK5RAP3-221ENST00000581662 TYW1BQ6NUM6 668 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms