RNA–Protein interactions for RNA: ENST00000571409.1

CTDNEP1-206, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 5

Gene CTDNEP1, Length 741 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-206ENST00000571409 DCTN1Q14203 1278 aa40.32■■■■■ 4.05
CTDNEP1-206ENST00000571409 FMNL2Q96PY5 1086 aa40.32■■■■■ 4.05
CTDNEP1-206ENST00000571409 C10orf71Q711Q0 1435 aa40.32■■■■■ 4.04
CTDNEP1-206ENST00000571409 HTATSF1O43719 755 aaKnown RBP40.31■■■■■ 4.04
CTDNEP1-206ENST00000571409 USPL1Q5W0Q7 1092 aa40.31■■■■■ 4.04
CTDNEP1-206ENST00000571409 WWC3Q9ULE0 1092 aa40.31■■■■■ 4.04
CTDNEP1-206ENST00000571409 KCNQ3O43525 872 aa40.3■■■■■ 4.04
CTDNEP1-206ENST00000571409 CANXP27824 592 aaKnown RBP40.3■■■■■ 4.04
CTDNEP1-206ENST00000571409 TEX13AQ9BXU3 409 aaPredicted RBP40.3■■■■■ 4.04
CTDNEP1-206ENST00000571409 KIAA1551Q9HCM1 1747 aa40.28■■■■■ 4.04
CTDNEP1-206ENST00000571409 PXDNLA1KZ92 1463 aa40.28■■■■■ 4.04
CTDNEP1-206ENST00000571409 ZNF784Q8NCA9 323 aaPredicted RBP40.28■■■■■ 4.04
CTDNEP1-206ENST00000571409 PLEKHF1Q96S99 279 aa40.28■■■■■ 4.04
CTDNEP1-206ENST00000571409 DLG5Q8TDM6 1919 aa40.27■■■■■ 4.04
CTDNEP1-206ENST00000571409 NARFQ9UHQ1 456 aa40.27■■■■■ 4.04
CTDNEP1-206ENST00000571409 N4BP2Q86UW6 1770 aaPredicted RBP40.26■■■■■ 4.04
CTDNEP1-206ENST00000571409 TGFB2P61812 414 aa40.25■■■■■ 4.03
CTDNEP1-206ENST00000571409 DDR1Q08345 913 aa40.25■■■■■ 4.03
CTDNEP1-206ENST00000571409 PNNQ9H307 717 aaKnown RBP40.23■■■■■ 4.03
CTDNEP1-206ENST00000571409 TM4SF1P30408 202 aa40.22■■■■■ 4.03
CTDNEP1-206ENST00000571409 MYBBP1AQ9BQG0 1328 aaKnown RBP40.21■■■■■ 4.03
CTDNEP1-206ENST00000571409 EIF5P55010 431 aaKnown RBP40.21■■■■■ 4.03
CTDNEP1-206ENST00000571409 MAPK8IP3Q9UPT6 1336 aa40.19■■■■■ 4.02
CTDNEP1-206ENST00000571409 A0A0G2JLW4 131 aa40.19■■■■■ 4.02
CTDNEP1-206ENST00000571409 POLRMTO00411 1230 aaKnown RBP40.19■■■■■ 4.02
CTDNEP1-206ENST00000571409 NFE2L2Q16236 605 aa40.19■■■■■ 4.02
CTDNEP1-206ENST00000571409 A0A087WZG4 1122 aa40.18■■■■■ 4.02
CTDNEP1-206ENST00000571409 BCL2L12Q9HB09 334 aa40.18■■■■■ 4.02
CTDNEP1-206ENST00000571409 TAF7Q15545 349 aaPredicted RBP40.17■■■■■ 4.02
CTDNEP1-206ENST00000571409 ZNF330Q9Y3S2 320 aaPredicted RBP40.17■■■■■ 4.02
CTDNEP1-206ENST00000571409 A1BGP04217 495 aa40.16■■■■■ 4.02
CTDNEP1-206ENST00000571409 DPEP1P16444 411 aa40.15■■■■■ 4.02
CTDNEP1-206ENST00000571409 IL6STP40189 918 aaPredicted RBP40.15■■■■■ 4.02
CTDNEP1-206ENST00000571409 NFIXQ14938 502 aa40.15■■■■■ 4.02
CTDNEP1-206ENST00000571409 USP16Q9Y5T5 823 aa40.15■■■■■ 4.02
CTDNEP1-206ENST00000571409 PRAMEF22A3QJZ6 481 aa40.13■■■■■ 4.01
CTDNEP1-206ENST00000571409 SNRPA1P09661 255 aaKnown RBP40.13■■■■■ 4.01
CTDNEP1-206ENST00000571409 MIS18AQ9NYP9 233 aa40.12■■■■■ 4.01
CTDNEP1-206ENST00000571409 AFDNP55196 1824 aaKnown RBP40.12■■■■■ 4.01
CTDNEP1-206ENST00000571409 SCN7AQ01118 1682 aa40.11■■■■■ 4.01
CTDNEP1-206ENST00000571409 BCS1LQ9Y276 419 aa40.11■■■■■ 4.01
CTDNEP1-206ENST00000571409 BRCA1P38398 1863 aaKnown RBP40.11■■■■■ 4.01
CTDNEP1-206ENST00000571409 NPM2Q86SE8 214 aaKnown RBP40.1■■■■■ 4.01
CTDNEP1-206ENST00000571409 TBC1D2BQ9UPU7 963 aa40.1■■■■■ 4.01
CTDNEP1-206ENST00000571409 NRXN2Q9P2S2 1712 aa40.08■■■■■ 4.01
CTDNEP1-206ENST00000571409 THUMPD2Q9BTF0 503 aaKnown RBP40.08■■■■■ 4.01
CTDNEP1-206ENST00000571409 KDM3BQ7LBC6 1761 aa40.07■■■■■ 4.01
CTDNEP1-206ENST00000571409 KCNA3P22001 575 aa40.07■■■■■ 4.01
CTDNEP1-206ENST00000571409 ZEB1P37275 1124 aaPredicted RBP40.07■■■■■ 4.01
CTDNEP1-206ENST00000571409 PNISRQ8TF01 805 aaKnown RBP40.07■■■■■ 4.01
CTDNEP1-206ENST00000571409 SERPINB2P05120 415 aa40.06■■■■■ 4
CTDNEP1-206ENST00000571409 PIP4K2AP48426 406 aaPredicted RBP40.06■■■■■ 4
CTDNEP1-206ENST00000571409 BICDL1Q6ZP65 573 aa40.06■■■■■ 4
CTDNEP1-206ENST00000571409 PRKRIP1Q9H875 184 aaPredicted RBP40.03■■■■■ 4
CTDNEP1-206ENST00000571409 TBC1D9BQ66K14 1250 aa40.02■■■■■ 4
CTDNEP1-206ENST00000571409 PIM2Q9P1W9 311 aa40.02■■■■■ 4
CTDNEP1-206ENST00000571409 LAMB4A4D0S4 1761 aa40.02■■■■■ 4
CTDNEP1-206ENST00000571409 CHRNA5P30532 468 aa40.01■■■■■ 4
CTDNEP1-206ENST00000571409 RIPK4P57078 832 aa40.01■■■■■ 4
CTDNEP1-206ENST00000571409 DZIP3Q86Y13 1208 aaKnown RBP40.01■■■■■ 4
CTDNEP1-206ENST00000571409 BCORQ6W2J9 1755 aa40.01■■■■■ 4
CTDNEP1-206ENST00000571409 CAMTA2O94983 1202 aa39.99■■■■□ 3.99
CTDNEP1-206ENST00000571409 WDR43Q15061 677 aaKnown RBP eCLIP39.98■■■■□ 3.99
CTDNEP1-206ENST00000571409 ARFGEF1Q9Y6D6 1849 aa39.98■■■■□ 3.99
CTDNEP1-206ENST00000571409 TMPOP42166 694 aaKnown RBP39.97■■■■□ 3.99
CTDNEP1-206ENST00000571409 CCDC146Q8IYE0 955 aa39.97■■■■□ 3.99
CTDNEP1-206ENST00000571409 ATP10DQ9P241 1426 aa39.97■■■■□ 3.99
CTDNEP1-206ENST00000571409 ADCY9O60503 1353 aa39.96■■■■□ 3.99
CTDNEP1-206ENST00000571409 NBPF26B4DH59 902 aa39.95■■■■□ 3.99
CTDNEP1-206ENST00000571409 EIF4A1P60842 406 aaKnown RBP39.95■■■■□ 3.99
CTDNEP1-206ENST00000571409 NBPF10Q6P3W6 841 aaKnown RBP39.95■■■■□ 3.99
CTDNEP1-206ENST00000571409 NBPF15Q8N660 670 aa39.95■■■■□ 3.99
CTDNEP1-206ENST00000571409 DALRD3Q5D0E6 543 aaKnown RBP39.94■■■■□ 3.98
CTDNEP1-206ENST00000571409 CARMIL3Q8ND23 1372 aa39.94■■■■□ 3.98
CTDNEP1-206ENST00000571409 ARHGAP27Q6ZUM4 889 aa39.93■■■■□ 3.98
CTDNEP1-206ENST00000571409 GIGYF1O75420 1035 aaPredicted RBP39.92■■■■□ 3.98
CTDNEP1-206ENST00000571409 LMOD3Q0VAK6 560 aa39.92■■■■□ 3.98
CTDNEP1-206ENST00000571409 RRP7AQ9Y3A4 280 aaKnown RBP39.92■■■■□ 3.98
CTDNEP1-206ENST00000571409 RUNDC1Q96C34 613 aa39.9■■■■□ 3.98
CTDNEP1-206ENST00000571409 SETDB2Q96T68 719 aa39.9■■■■□ 3.98
CTDNEP1-206ENST00000571409 DLEC1Q9Y238 1755 aa39.89■■■■□ 3.98
CTDNEP1-206ENST00000571409 TSPYL4Q9UJ04 414 aa39.89■■■■□ 3.98
CTDNEP1-206ENST00000571409 ADAMTS8Q9UP79 889 aa39.89■■■■□ 3.98
CTDNEP1-206ENST00000571409 NEUROD2Q15784 382 aa39.88■■■■□ 3.97
CTDNEP1-206ENST00000571409 PRR5LQ6MZQ0 368 aa39.87■■■■□ 3.97
CTDNEP1-206ENST00000571409 ANKRD31Q8N7Z5 1873 aa39.86■■■■□ 3.97
CTDNEP1-206ENST00000571409 CLEC4GQ6UXB4 293 aa39.86■■■■□ 3.97
CTDNEP1-206ENST00000571409 ZNF652Q9Y2D9 606 aa39.86■■■■□ 3.97
CTDNEP1-206ENST00000571409 C2CD5Q86YS7 1000 aa39.85■■■■□ 3.97
CTDNEP1-206ENST00000571409 CCDC24Q8N4L8 307 aa39.84■■■■□ 3.97
CTDNEP1-206ENST00000571409 H0YIN7 160 aa39.82■■■■□ 3.97
CTDNEP1-206ENST00000571409 NPHP1O15259 732 aa39.82■■■■□ 3.97
CTDNEP1-206ENST00000571409 CNBD1Q8NA66 436 aa39.82■■■■□ 3.97
CTDNEP1-206ENST00000571409 ZNF526Q8TF50 670 aaPredicted RBP39.82■■■■□ 3.97
CTDNEP1-206ENST00000571409 BRIP1Q9BX63 1249 aa39.81■■■■□ 3.96
CTDNEP1-206ENST00000571409 GPBP1L1Q9HC44 474 aaPredicted RBP39.81■■■■□ 3.96
CTDNEP1-206ENST00000571409 BABAM1Q9NWV8 329 aa39.81■■■■□ 3.96
CTDNEP1-206ENST00000571409 NGEFQ8N5V2 710 aa39.8■■■■□ 3.96
CTDNEP1-206ENST00000571409 PDE6BP35913 854 aa39.79■■■■□ 3.96
CTDNEP1-206ENST00000571409 RGL2O15211 777 aa39.78■■■■□ 3.96
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms