RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 IL17REQ8NFR9 667 aa25.11■■□□□ 1.61
CLN3-218ENST00000565688 NUDCQ9Y266 331 aa25.11■■□□□ 1.61
CLN3-218ENST00000565688 ZBTB1Q9Y2K1 713 aa25.11■■□□□ 1.61
CLN3-218ENST00000565688 POLRMTO00411 1230 aaKnown RBP25.1■■□□□ 1.61
CLN3-218ENST00000565688 KCNA3P22001 575 aa25.1■■□□□ 1.61
CLN3-218ENST00000565688 PIM2Q9P1W9 311 aa25.1■■□□□ 1.61
CLN3-218ENST00000565688 ZNF790Q6PG37 636 aa25.09■■□□□ 1.61
CLN3-218ENST00000565688 ARHGAP27Q6ZUM4 889 aa25.09■■□□□ 1.61
CLN3-218ENST00000565688 ZNF526Q8TF50 670 aaPredicted RBP25.09■■□□□ 1.61
CLN3-218ENST00000565688 TEX13AQ9BXU3 409 aaPredicted RBP25.09■■□□□ 1.61
CLN3-218ENST00000565688 PRKAR2BP31323 418 aa25.08■■□□□ 1.61
CLN3-218ENST00000565688 RSPH6AQ9H0K4 717 aa25.08■■□□□ 1.61
CLN3-218ENST00000565688 BRCA1P38398 1863 aaKnown RBP25.08■■□□□ 1.61
CLN3-218ENST00000565688 CEMIPQ8WUJ3 1361 aa25.06■■□□□ 1.6
CLN3-218ENST00000565688 CANXP27824 592 aaKnown RBP25.06■■□□□ 1.6
CLN3-218ENST00000565688 PPP2R1AP30153 589 aa25.06■■□□□ 1.6
CLN3-218ENST00000565688 DALRD3Q5D0E6 543 aaKnown RBP25.06■■□□□ 1.6
CLN3-218ENST00000565688 ZNF496Q96IT1 587 aaPredicted RBP25.06■■□□□ 1.6
CLN3-218ENST00000565688 HEG1Q9ULI3 1381 aa25.05■■□□□ 1.6
CLN3-218ENST00000565688 A0A087WZG4 1122 aa25.05■■□□□ 1.6
CLN3-218ENST00000565688 NFIXQ14938 502 aa25.05■■□□□ 1.6
CLN3-218ENST00000565688 PHACTR3Q96KR7 559 aa25.05■■□□□ 1.6
CLN3-218ENST00000565688 SIPA1L3O60292 1781 aaPredicted RBP25.04■■□□□ 1.6
CLN3-218ENST00000565688 EIF5P55010 431 aaKnown RBP25.04■■□□□ 1.6
CLN3-218ENST00000565688 FMNL2Q96PY5 1086 aa25.04■■□□□ 1.6
CLN3-218ENST00000565688 CEP350Q5VT06 3117 aa25.03■■□□□ 1.6
CLN3-218ENST00000565688 ARFGEF1Q9Y6D6 1849 aa25.03■■□□□ 1.6
CLN3-218ENST00000565688 U2AF1L5P0DN76 240 aaPredicted RBP25.03■■□□□ 1.6
CLN3-218ENST00000565688 U2AF1Q01081 240 aaKnown RBP eCLIP25.03■■□□□ 1.6
CLN3-218ENST00000565688 BCL2L12Q9HB09 334 aa25.02■■□□□ 1.6
CLN3-218ENST00000565688 CHRNA5P30532 468 aa25.01■■□□□ 1.59
CLN3-218ENST00000565688 BTBD11A6QL63 1104 aa25■■□□□ 1.59
CLN3-218ENST00000565688 SERPINB2P05120 415 aa24.99■■□□□ 1.59
CLN3-218ENST00000565688 RTF1Q92541 710 aaKnown RBP24.99■■□□□ 1.59
CLN3-218ENST00000565688 NRXN2Q9P2S2 1712 aa24.99■■□□□ 1.59
CLN3-218ENST00000565688 IL6STP40189 918 aaPredicted RBP24.98■■□□□ 1.59
CLN3-218ENST00000565688 NPM2Q86SE8 214 aaKnown RBP24.98■■□□□ 1.59
CLN3-218ENST00000565688 AFDNP55196 1824 aaKnown RBP24.98■■□□□ 1.59
CLN3-218ENST00000565688 KIF3CO14782 793 aa24.97■■□□□ 1.59
CLN3-218ENST00000565688 C9orf131Q5VYM1 1079 aa24.96■■□□□ 1.59
CLN3-218ENST00000565688 HTATSF1O43719 755 aaKnown RBP24.95■■□□□ 1.58
CLN3-218ENST00000565688 ZNF330Q9Y3S2 320 aaPredicted RBP24.95■■□□□ 1.58
CLN3-218ENST00000565688 BICDL1Q6ZP65 573 aa24.94■■□□□ 1.58
CLN3-218ENST00000565688 KCNQ3O43525 872 aa24.93■■□□□ 1.58
CLN3-218ENST00000565688 A1BGP04217 495 aa24.93■■□□□ 1.58
CLN3-218ENST00000565688 HSPA6P17066 643 aa24.93■■□□□ 1.58
CLN3-218ENST00000565688 MCM10Q7L590 875 aa24.93■■□□□ 1.58
CLN3-218ENST00000565688 TBC1D2BQ9UPU7 963 aa24.93■■□□□ 1.58
CLN3-218ENST00000565688 SCN7AQ01118 1682 aa24.92■■□□□ 1.58
CLN3-218ENST00000565688 TBC1D9BQ66K14 1250 aa24.92■■□□□ 1.58
CLN3-218ENST00000565688 CARMIL3Q8ND23 1372 aa24.92■■□□□ 1.58
CLN3-218ENST00000565688 H0YIN7 160 aa24.91■■□□□ 1.58
CLN3-218ENST00000565688 NEFMP07197 916 aa24.91■■□□□ 1.58
CLN3-218ENST00000565688 C2CD5Q86YS7 1000 aa24.91■■□□□ 1.58
CLN3-218ENST00000565688 TTLL6Q8N841 843 aa24.91■■□□□ 1.58
CLN3-218ENST00000565688 RNF181Q9P0P0 153 aa24.91■■□□□ 1.58
CLN3-218ENST00000565688 PDZRN3Q9UPQ7 1066 aa24.91■■□□□ 1.58
CLN3-218ENST00000565688 SNRPA1P09661 255 aaKnown RBP24.9■■□□□ 1.58
CLN3-218ENST00000565688 DLEC1Q9Y238 1755 aa24.9■■□□□ 1.58
CLN3-218ENST00000565688 TOMM70O94826 608 aa24.89■■□□□ 1.58
CLN3-218ENST00000565688 CAMTA2O94983 1202 aa24.88■■□□□ 1.57
CLN3-218ENST00000565688 PDE6BP35913 854 aa24.88■■□□□ 1.57
CLN3-218ENST00000565688 SETDB2Q96T68 719 aa24.88■■□□□ 1.57
CLN3-218ENST00000565688 BRIP1Q9BX63 1249 aa24.88■■□□□ 1.57
CLN3-218ENST00000565688 USP16Q9Y5T5 823 aa24.88■■□□□ 1.57
CLN3-218ENST00000565688 KDM2BQ8NHM5 1336 aa24.87■■□□□ 1.57
CLN3-218ENST00000565688 DCTN1Q14203 1278 aa24.87■■□□□ 1.57
CLN3-218ENST00000565688 TAF7Q15545 349 aaPredicted RBP24.87■■□□□ 1.57
CLN3-218ENST00000565688 DZIP3Q86Y13 1208 aaKnown RBP24.87■■□□□ 1.57
CLN3-218ENST00000565688 NMRK2Q9NPI5 230 aa24.87■■□□□ 1.57
CLN3-218ENST00000565688 ZC3H4Q9UPT8 1303 aaKnown RBP24.86■■□□□ 1.57
CLN3-218ENST00000565688 PRR5LQ6MZQ0 368 aa24.85■■□□□ 1.57
CLN3-218ENST00000565688 LMNB1P20700 586 aa24.84■■□□□ 1.57
CLN3-218ENST00000565688 CLEC4GQ6UXB4 293 aa24.84■■□□□ 1.57
CLN3-218ENST00000565688 CNBD1Q8NA66 436 aa24.84■■□□□ 1.57
CLN3-218ENST00000565688 SBF1O95248 1867 aa24.83■■□□□ 1.57
CLN3-218ENST00000565688 PRAMEF22A3QJZ6 481 aa24.83■■□□□ 1.57
CLN3-218ENST00000565688 NPHP1O15259 732 aa24.83■■□□□ 1.57
CLN3-218ENST00000565688 C16orf71Q8IYS4 520 aaPredicted RBP24.83■■□□□ 1.57
CLN3-218ENST00000565688 PNNQ9H307 717 aaKnown RBP24.83■■□□□ 1.57
CLN3-218ENST00000565688 ZNF652Q9Y2D9 606 aa24.83■■□□□ 1.57
CLN3-218ENST00000565688 BCORQ6W2J9 1755 aa24.82■■□□□ 1.56
CLN3-218ENST00000565688 ST5P78524 1137 aa24.82■■□□□ 1.56
CLN3-218ENST00000565688 RASSF7Q02833 373 aa24.82■■□□□ 1.56
CLN3-218ENST00000565688 PNISRQ8TF01 805 aaKnown RBP24.82■■□□□ 1.56
CLN3-218ENST00000565688 RGL2O15211 777 aa24.81■■□□□ 1.56
CLN3-218ENST00000565688 PIP4K2AP48426 406 aaPredicted RBP24.81■■□□□ 1.56
CLN3-218ENST00000565688 RBM46Q8TBY0 533 aaKnown RBP24.81■■□□□ 1.56
CLN3-218ENST00000565688 ZNF622Q969S3 477 aaKnown RBP eCLIP24.81■■□□□ 1.56
CLN3-218ENST00000565688 ANKRD31Q8N7Z5 1873 aa24.81■■□□□ 1.56
CLN3-218ENST00000565688 APLP1P51693 650 aa24.8■■□□□ 1.56
CLN3-218ENST00000565688 PLEKHF1Q96S99 279 aa24.8■■□□□ 1.56
CLN3-218ENST00000565688 NFE2L2Q16236 605 aa24.78■■□□□ 1.56
CLN3-218ENST00000565688 CCDC24Q8N4L8 307 aa24.78■■□□□ 1.56
CLN3-218ENST00000565688 NBPF26B4DH59 902 aa24.77■■□□□ 1.56
CLN3-218ENST00000565688 NBPF10Q6P3W6 841 aaKnown RBP24.77■■□□□ 1.56
CLN3-218ENST00000565688 NBPF5PQ86XG9 351 aaPredicted RBP24.77■■□□□ 1.56
CLN3-218ENST00000565688 NBPF15Q8N660 670 aa24.77■■□□□ 1.56
CLN3-218ENST00000565688 CNKSR1Q969H4 720 aa24.77■■□□□ 1.56
CLN3-218ENST00000565688 MIS18AQ9NYP9 233 aa24.77■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms