RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 ZNF853P0CG23 659 aa12.16□□□□□ -0.46
VPS35-206ENST00000565228 YY1P25490 414 aa12.16□□□□□ -0.46
VPS35-206ENST00000565228 IFFO2Q5TF58 517 aa12.16□□□□□ -0.46
VPS35-206ENST00000565228 PNNQ9H307 717 aaKnown RBP12.16□□□□□ -0.46
VPS35-206ENST00000565228 SPINK5Q9NQ38 1064 aaPredicted RBP12.16□□□□□ -0.46
VPS35-206ENST00000565228 NBPF26B4DH59 902 aa12.15□□□□□ -0.46
VPS35-206ENST00000565228 RPS6KA4O75676 772 aa12.15□□□□□ -0.46
VPS35-206ENST00000565228 RC3H1Q5TC82 1133 aaKnown RBP12.15□□□□□ -0.46
VPS35-206ENST00000565228 MSL1Q68DK7 614 aa12.15□□□□□ -0.46
VPS35-206ENST00000565228 NBPF10Q6P3W6 841 aaKnown RBP12.15□□□□□ -0.46
VPS35-206ENST00000565228 VSIG10Q8N0Z9 540 aa12.15□□□□□ -0.46
VPS35-206ENST00000565228 NBPF15Q8N660 670 aa12.15□□□□□ -0.46
VPS35-206ENST00000565228 ARHGEF1Q92888 912 aaKnown RBP12.15□□□□□ -0.46
VPS35-206ENST00000565228 AK7Q96M32 723 aa12.15□□□□□ -0.46
VPS35-206ENST00000565228 SRP68Q9UHB9 627 aaKnown RBP12.15□□□□□ -0.46
VPS35-206ENST00000565228 LAMB4A4D0S4 1761 aa12.15□□□□□ -0.46
VPS35-206ENST00000565228 SOS1Q07889 1333 aaPredicted RBP12.14□□□□□ -0.47
VPS35-206ENST00000565228 FMNL2Q96PY5 1086 aa12.14□□□□□ -0.47
VPS35-206ENST00000565228 BCL2L12Q9HB09 334 aa12.14□□□□□ -0.47
VPS35-206ENST00000565228 SALL2Q9Y467 1007 aaPredicted RBP12.14□□□□□ -0.47
VPS35-206ENST00000565228 CCER2I3L3R5 266 aa12.13□□□□□ -0.47
VPS35-206ENST00000565228 GIGYF1O75420 1035 aaPredicted RBP12.13□□□□□ -0.47
VPS35-206ENST00000565228 NEFMP07197 916 aa12.13□□□□□ -0.47
VPS35-206ENST00000565228 HOXD11P31277 338 aaPredicted RBP12.13□□□□□ -0.47
VPS35-206ENST00000565228 WWC1Q8IX03 1113 aa12.13□□□□□ -0.47
VPS35-206ENST00000565228 TTC5Q8N0Z6 440 aa12.13□□□□□ -0.47
VPS35-206ENST00000565228 MBIPQ9NS73 344 aa12.13□□□□□ -0.47
VPS35-206ENST00000565228 CCDC87Q9NVE4 849 aa12.13□□□□□ -0.47
VPS35-206ENST00000565228 CANXP27824 592 aaKnown RBP12.12□□□□□ -0.47
VPS35-206ENST00000565228 SSFA2P28290 1259 aa12.12□□□□□ -0.47
VPS35-206ENST00000565228 EIF5P55010 431 aaKnown RBP12.12□□□□□ -0.47
VPS35-206ENST00000565228 LRP10Q7Z4F1 713 aa12.12□□□□□ -0.47
VPS35-206ENST00000565228 MTFR1LQ9H019 292 aa12.12□□□□□ -0.47
VPS35-206ENST00000565228 TSPYL4Q9UJ04 414 aa12.12□□□□□ -0.47
VPS35-206ENST00000565228 ZNF521Q96K83 1311 aa12.11□□□□□ -0.47
VPS35-206ENST00000565228 GYS1P13807 737 aa12.11□□□□□ -0.47
VPS35-206ENST00000565228 PDIA6Q15084 440 aa12.11□□□□□ -0.47
VPS35-206ENST00000565228 PROSER3Q2NL68 480 aa12.11□□□□□ -0.47
VPS35-206ENST00000565228 LAS1LQ9Y4W2 734 aaKnown RBP12.11□□□□□ -0.47
VPS35-206ENST00000565228 GOLGB1Q14789 3259 aaKnown RBP12.1□□□□□ -0.47
VPS35-206ENST00000565228 SNRPA1P09661 255 aaKnown RBP12.1□□□□□ -0.47
VPS35-206ENST00000565228 LMOD3Q0VAK6 560 aa12.1□□□□□ -0.47
VPS35-206ENST00000565228 FKBP8Q14318 412 aa12.1□□□□□ -0.47
VPS35-206ENST00000565228 CCDC27Q2M243 656 aa12.1□□□□□ -0.47
VPS35-206ENST00000565228 TSR2Q969E8 191 aaKnown RBP12.1□□□□□ -0.47
VPS35-206ENST00000565228 CFAP44Q96MT7 982 aa12.1□□□□□ -0.47
VPS35-206ENST00000565228 SPON1Q9HCB6 807 aa12.1□□□□□ -0.47
VPS35-206ENST00000565228 RTCBQ9Y3I0 505 aaKnown RBP12.1□□□□□ -0.47
VPS35-206ENST00000565228 USP42Q9H9J4 1324 aaKnown RBP12.1□□□□□ -0.47
VPS35-206ENST00000565228 COL15A1P39059 1388 aa12.09□□□□□ -0.47
VPS35-206ENST00000565228 ANXA1P04083 346 aa12.09□□□□□ -0.47
VPS35-206ENST00000565228 TRAPPC3LQ5T215 181 aa12.09□□□□□ -0.47
VPS35-206ENST00000565228 TSPYL6Q8N831 410 aa12.09□□□□□ -0.47
VPS35-206ENST00000565228 C8orf58Q8NAV2 365 aa12.09□□□□□ -0.47
VPS35-206ENST00000565228 BCORQ6W2J9 1755 aa12.09□□□□□ -0.47
VPS35-206ENST00000565228 KIAA1551Q9HCM1 1747 aa12.08□□□□□ -0.47
VPS35-206ENST00000565228 SCN7AQ01118 1682 aa12.08□□□□□ -0.48
VPS35-206ENST00000565228 DCAF8L1A6NGE4 600 aa12.08□□□□□ -0.48
VPS35-206ENST00000565228 DDR1Q08345 913 aa12.08□□□□□ -0.48
VPS35-206ENST00000565228 USPL1Q5W0Q7 1092 aa12.08□□□□□ -0.48
VPS35-206ENST00000565228 SLC16A10Q8TF71 515 aa12.08□□□□□ -0.48
VPS35-206ENST00000565228 BABAM1Q9NWV8 329 aa12.08□□□□□ -0.48
VPS35-206ENST00000565228 AFDNP55196 1824 aaKnown RBP12.08□□□□□ -0.48
VPS35-206ENST00000565228 NECTIN2Q92692 538 aa12.07□□□□□ -0.48
VPS35-206ENST00000565228 IFT57Q9NWB7 429 aa12.07□□□□□ -0.48
VPS35-206ENST00000565228 TBC1D2BQ9UPU7 963 aa12.07□□□□□ -0.48
VPS35-206ENST00000565228 CAMTA2O94983 1202 aa12.06□□□□□ -0.48
VPS35-206ENST00000565228 IL6STP40189 918 aaPredicted RBP12.06□□□□□ -0.48
VPS35-206ENST00000565228 NCBP3Q53F19 620 aaKnown RBP12.06□□□□□ -0.48
VPS35-206ENST00000565228 TTLL7Q6ZT98 887 aa12.06□□□□□ -0.48
VPS35-206ENST00000565228 FLAD1Q8NFF5 587 aa12.06□□□□□ -0.48
VPS35-206ENST00000565228 RNF216Q9NWF9 866 aaPredicted RBP12.06□□□□□ -0.48
VPS35-206ENST00000565228 NARFQ9UHQ1 456 aa12.06□□□□□ -0.48
VPS35-206ENST00000565228 ELL2O00472 640 aaPredicted RBP12.05□□□□□ -0.48
VPS35-206ENST00000565228 STARD3NLO95772 234 aa12.05□□□□□ -0.48
VPS35-206ENST00000565228 EIF2S2P20042 333 aaKnown RBP12.05□□□□□ -0.48
VPS35-206ENST00000565228 TM4SF1P30408 202 aa12.05□□□□□ -0.48
VPS35-206ENST00000565228 RFC4P35249 363 aa12.05□□□□□ -0.48
VPS35-206ENST00000565228 HLFQ16534 295 aa12.05□□□□□ -0.48
VPS35-206ENST00000565228 DUSP27Q5VZP5 1158 aa12.05□□□□□ -0.48
VPS35-206ENST00000565228 NLGN2Q8NFZ4 835 aa12.05□□□□□ -0.48
VPS35-206ENST00000565228 TEX13AQ9BXU3 409 aaPredicted RBP12.05□□□□□ -0.48
VPS35-206ENST00000565228 FHDC1Q9C0D6 1143 aaPredicted RBP12.05□□□□□ -0.48
VPS35-206ENST00000565228 NRXN2Q9P2S2 1712 aa12.05□□□□□ -0.48
VPS35-206ENST00000565228 NUP98P52948 1817 aa12.04□□□□□ -0.48
VPS35-206ENST00000565228 KIF13BQ9NQT8 1826 aa12.04□□□□□ -0.48
VPS35-206ENST00000565228 MMP10P09238 476 aa12.04□□□□□ -0.48
VPS35-206ENST00000565228 NFIXQ14938 502 aa12.04□□□□□ -0.48
VPS35-206ENST00000565228 TBC1D9BQ66K14 1250 aa12.04□□□□□ -0.48
VPS35-206ENST00000565228 NGEFQ8N5V2 710 aa12.04□□□□□ -0.48
VPS35-206ENST00000565228 CDCA7LQ96GN5 454 aa12.04□□□□□ -0.48
VPS35-206ENST00000565228 ARXQ96QS3 562 aa12.04□□□□□ -0.48
VPS35-206ENST00000565228 ZNF330Q9Y3S2 320 aaPredicted RBP12.04□□□□□ -0.48
VPS35-206ENST00000565228 FANCIQ9NVI1 1328 aa12.04□□□□□ -0.48
VPS35-206ENST00000565228 POLRMTO00411 1230 aaKnown RBP12.03□□□□□ -0.48
VPS35-206ENST00000565228 MYL6BP14649 208 aa12.03□□□□□ -0.48
VPS35-206ENST00000565228 GNAI1P63096 354 aa12.03□□□□□ -0.48
VPS35-206ENST00000565228 WDR63Q8IWG1 891 aa12.03□□□□□ -0.48
VPS35-206ENST00000565228 SYT17Q9BSW7 474 aa12.03□□□□□ -0.48
VPS35-206ENST00000565228 CARMIL3Q8ND23 1372 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms