RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 SLC4A2P04920 1241 aa16.34■□□□□ 0.21
CLK3-214ENST00000564096 CHPF2Q9P2E5 772 aa16.34■□□□□ 0.21
CLK3-214ENST00000564096 ZNF831Q5JPB2 1677 aa16.34■□□□□ 0.21
CLK3-214ENST00000564096 LOC102724428A0A0B4J2F2 783 aa16.33■□□□□ 0.2
CLK3-214ENST00000564096 TCERG1O14776 1098 aaKnown RBP16.33■□□□□ 0.2
CLK3-214ENST00000564096 HMGB2P26583 209 aaKnown RBP16.33■□□□□ 0.2
CLK3-214ENST00000564096 SIK1P57059 783 aa16.33■□□□□ 0.2
CLK3-214ENST00000564096 PDE3AQ14432 1141 aa16.33■□□□□ 0.2
CLK3-214ENST00000564096 ATF7IPQ6VMQ6 1270 aa16.33■□□□□ 0.2
CLK3-214ENST00000564096 HYPKQ9NX55 129 aa16.33■□□□□ 0.2
CLK3-214ENST00000564096 NOB1Q9ULX3 412 aaKnown RBP16.33■□□□□ 0.2
CLK3-214ENST00000564096 SBF2Q86WG5 1849 aa16.33■□□□□ 0.2
CLK3-214ENST00000564096 PRAMEF22A3QJZ6 481 aa16.32■□□□□ 0.2
CLK3-214ENST00000564096 PLIN1O60240 522 aa16.32■□□□□ 0.2
CLK3-214ENST00000564096 TJP1Q07157 1748 aa16.32■□□□□ 0.2
CLK3-214ENST00000564096 FLIIQ13045 1269 aa16.32■□□□□ 0.2
CLK3-214ENST00000564096 DDX21Q9NR30 783 aaKnown RBP eCLIP16.32■□□□□ 0.2
CLK3-214ENST00000564096 TRIM27P14373 513 aa16.31■□□□□ 0.2
CLK3-214ENST00000564096 ATP6V1AP38606 617 aa16.31■□□□□ 0.2
CLK3-214ENST00000564096 DZIP1LQ8IYY4 767 aaKnown RBP16.31■□□□□ 0.2
CLK3-214ENST00000564096 PXDNLA1KZ92 1463 aa16.3■□□□□ 0.2
CLK3-214ENST00000564096 DDX58O95786 925 aaKnown RBP16.3■□□□□ 0.2
CLK3-214ENST00000564096 FKBP5Q13451 457 aaPredicted RBP16.3■□□□□ 0.2
CLK3-214ENST00000564096 DNAJC10Q8IXB1 793 aa16.3■□□□□ 0.2
CLK3-214ENST00000564096 USP16Q9Y5T5 823 aa16.3■□□□□ 0.2
CLK3-214ENST00000564096 TRIM37O94972 964 aa16.29■□□□□ 0.2
CLK3-214ENST00000564096 ERICH6BQ5W0A0 696 aa16.29■□□□□ 0.2
CLK3-214ENST00000564096 NPM2Q86SE8 214 aaKnown RBP16.29■□□□□ 0.2
CLK3-214ENST00000564096 ABCC4O15439 1325 aa16.28■□□□□ 0.2
CLK3-214ENST00000564096 CACNA1FO60840 1977 aa16.28■□□□□ 0.2
CLK3-214ENST00000564096 FKBP8Q14318 412 aa16.28■□□□□ 0.2
CLK3-214ENST00000564096 CCNL1Q9UK58 526 aaPredicted RBP16.28■□□□□ 0.2
CLK3-214ENST00000564096 KAT6BQ8WYB5 2073 aa16.28■□□□□ 0.2
CLK3-214ENST00000564096 MYL6BP14649 208 aa16.27■□□□□ 0.2
CLK3-214ENST00000564096 IRX6P78412 446 aaPredicted RBP16.27■□□□□ 0.2
CLK3-214ENST00000564096 CHMP4BQ9H444 224 aaKnown RBP16.27■□□□□ 0.2
CLK3-214ENST00000564096 LY75O60449 1722 aa16.27■□□□□ 0.19
CLK3-214ENST00000564096 CYP19A1P11511 503 aaPredicted RBP16.26■□□□□ 0.19
CLK3-214ENST00000564096 PROSER3Q2NL68 480 aa16.26■□□□□ 0.19
CLK3-214ENST00000564096 SLC27A3Q5K4L6 730 aa16.26■□□□□ 0.19
CLK3-214ENST00000564096 CLUAP1Q96AJ1 413 aa16.26■□□□□ 0.19
CLK3-214ENST00000564096 SLC4A9Q96Q91 983 aa16.26■□□□□ 0.19
CLK3-214ENST00000564096 COL5A3P25940 1745 aaPredicted RBP16.25■□□□□ 0.19
CLK3-214ENST00000564096 CNTNAP4Q9C0A0 1308 aa16.25■□□□□ 0.19
CLK3-214ENST00000564096 RREB1Q92766 1687 aa16.25■□□□□ 0.19
CLK3-214ENST00000564096 ANXA1P04083 346 aa16.25■□□□□ 0.19
CLK3-214ENST00000564096 PDIA6Q15084 440 aa16.25■□□□□ 0.19
CLK3-214ENST00000564096 PTF1AQ7RTS3 328 aa16.25■□□□□ 0.19
CLK3-214ENST00000564096 ITPRIPQ8IWB1 547 aa16.25■□□□□ 0.19
CLK3-214ENST00000564096 PANK1Q8TE04 598 aa16.25■□□□□ 0.19
CLK3-214ENST00000564096 CCDC87Q9NVE4 849 aa16.25■□□□□ 0.19
CLK3-214ENST00000564096 GTF3C3Q9Y5Q9 886 aa16.25■□□□□ 0.19
CLK3-214ENST00000564096 RGPD3A6NKT7 1758 aaPredicted RBP16.25■□□□□ 0.19
CLK3-214ENST00000564096 RGPD4Q7Z3J3 1758 aa16.25■□□□□ 0.19
CLK3-214ENST00000564096 TNS1Q9HBL0 1735 aaKnown RBP16.25■□□□□ 0.19
CLK3-214ENST00000564096 CCT4P50991 539 aaKnown RBP16.24■□□□□ 0.19
CLK3-214ENST00000564096 ITPK1Q13572 414 aa16.24■□□□□ 0.19
CLK3-214ENST00000564096 MVPQ14764 893 aaKnown RBP16.24■□□□□ 0.19
CLK3-214ENST00000564096 C20orf194Q5TEA3 1177 aa16.24■□□□□ 0.19
CLK3-214ENST00000564096 KIF6Q6ZMV9 814 aa16.24■□□□□ 0.19
CLK3-214ENST00000564096 G2E3Q7L622 706 aa16.24■□□□□ 0.19
CLK3-214ENST00000564096 XAGE3Q8WTP9 111 aa16.24■□□□□ 0.19
CLK3-214ENST00000564096 PHAXQ9H814 394 aaKnown RBP16.24■□□□□ 0.19
CLK3-214ENST00000564096 DDX19BQ9UMR2 479 aa16.24■□□□□ 0.19
CLK3-214ENST00000564096 ATP10DQ9P241 1426 aa16.23■□□□□ 0.19
CLK3-214ENST00000564096 A1BGP04217 495 aa16.23■□□□□ 0.19
CLK3-214ENST00000564096 IL6STP40189 918 aaPredicted RBP16.23■□□□□ 0.19
CLK3-214ENST00000564096 CRKLP46109 303 aaKnown RBP16.23■□□□□ 0.19
CLK3-214ENST00000564096 SF3B2Q13435 895 aaKnown RBP16.23■□□□□ 0.19
CLK3-214ENST00000564096 AAMPQ13685 434 aa16.23■□□□□ 0.19
CLK3-214ENST00000564096 CRBNQ96SW2 442 aa16.23■□□□□ 0.19
CLK3-214ENST00000564096 ZBTB1Q9Y2K1 713 aa16.23■□□□□ 0.19
CLK3-214ENST00000564096 ZNF330Q9Y3S2 320 aaPredicted RBP16.23■□□□□ 0.19
CLK3-214ENST00000564096 NBPF26B4DH59 902 aa16.22■□□□□ 0.19
CLK3-214ENST00000564096 APBA3O96018 575 aa16.22■□□□□ 0.19
CLK3-214ENST00000564096 AIMP1Q12904 312 aaKnown RBP16.22■□□□□ 0.19
CLK3-214ENST00000564096 NBPF14Q5TI25 921 aa16.22■□□□□ 0.19
CLK3-214ENST00000564096 NBPF10Q6P3W6 841 aaKnown RBP16.22■□□□□ 0.19
CLK3-214ENST00000564096 KSR2Q6VAB6 950 aa16.22■□□□□ 0.19
CLK3-214ENST00000564096 COPS6Q7L5N1 327 aa16.22■□□□□ 0.19
CLK3-214ENST00000564096 TMEM57Q8N5G2 664 aa16.22■□□□□ 0.19
CLK3-214ENST00000564096 NBPF15Q8N660 670 aa16.22■□□□□ 0.19
CLK3-214ENST00000564096 DNAAF4Q8WXU2 420 aa16.22■□□□□ 0.19
CLK3-214ENST00000564096 COG6Q9Y2V7 657 aa16.22■□□□□ 0.19
CLK3-214ENST00000564096 N4BP2Q86UW6 1770 aaPredicted RBP16.21■□□□□ 0.19
CLK3-214ENST00000564096 PLSCR1O15162 318 aa16.21■□□□□ 0.19
CLK3-214ENST00000564096 RLBP1P12271 317 aa16.21■□□□□ 0.19
CLK3-214ENST00000564096 PIP4K2AP48426 406 aaPredicted RBP16.21■□□□□ 0.19
CLK3-214ENST00000564096 NEXNQ0ZGT2 675 aa16.21■□□□□ 0.19
CLK3-214ENST00000564096 SLC4A10Q6U841 1118 aa16.21■□□□□ 0.19
CLK3-214ENST00000564096 LRP10Q7Z4F1 713 aa16.21■□□□□ 0.19
CLK3-214ENST00000564096 RIC3Q7Z5B4 369 aa16.21■□□□□ 0.19
CLK3-214ENST00000564096 LINC00116Q8NCU8 138 aa16.21■□□□□ 0.19
CLK3-214ENST00000564096 ADCY9O60503 1353 aa16.21■□□□□ 0.19
CLK3-214ENST00000564096 A0A087WZG4 1122 aa16.2■□□□□ 0.18
CLK3-214ENST00000564096 PI4KAP2A4QPH2 592 aa16.2■□□□□ 0.18
CLK3-214ENST00000564096 RC3H1Q5TC82 1133 aaKnown RBP16.2■□□□□ 0.18
CLK3-214ENST00000564096 INTS3Q68E01 1043 aaKnown RBP16.2■□□□□ 0.18
CLK3-214ENST00000564096 PI4KAP1Q8N8J0 262 aa16.2■□□□□ 0.18
CLK3-214ENST00000564096 PLBD2Q8NHP8 589 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms