RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 KCPQ6ZWJ8 1503 aa17.51■□□□□ 0.39
SF3B3-202ENST00000562722 TOMM70O94826 608 aa17.5■□□□□ 0.39
SF3B3-202ENST00000562722 C16orf71Q8IYS4 520 aaPredicted RBP17.5■□□□□ 0.39
SF3B3-202ENST00000562722 RNF181Q9P0P0 153 aa17.5■□□□□ 0.39
SF3B3-202ENST00000562722 NARFQ9UHQ1 456 aa17.5■□□□□ 0.39
SF3B3-202ENST00000562722 TEFQ10587 303 aa17.49■□□□□ 0.39
SF3B3-202ENST00000562722 NFIXQ14938 502 aa17.49■□□□□ 0.39
SF3B3-202ENST00000562722 VSIG10Q8N0Z9 540 aa17.49■□□□□ 0.39
SF3B3-202ENST00000562722 BRCA1P38398 1863 aaKnown RBP17.49■□□□□ 0.39
SF3B3-202ENST00000562722 STARD3NLO95772 234 aa17.48■□□□□ 0.39
SF3B3-202ENST00000562722 ZNF330Q9Y3S2 320 aaPredicted RBP17.48■□□□□ 0.39
SF3B3-202ENST00000562722 CEP350Q5VT06 3117 aa17.48■□□□□ 0.39
SF3B3-202ENST00000562722 ADAMTS7Q9UKP4 1686 aa17.48■□□□□ 0.39
SF3B3-202ENST00000562722 ARFGEF1Q9Y6D6 1849 aa17.47■□□□□ 0.39
SF3B3-202ENST00000562722 APLP1P51693 650 aa17.47■□□□□ 0.39
SF3B3-202ENST00000562722 BICDL1Q6ZP65 573 aa17.47■□□□□ 0.39
SF3B3-202ENST00000562722 GAS2L2Q8NHY3 880 aa17.47■□□□□ 0.39
SF3B3-202ENST00000562722 KDM2BQ8NHM5 1336 aa17.47■□□□□ 0.39
SF3B3-202ENST00000562722 GNAT3A8MTJ3 354 aa17.46■□□□□ 0.39
SF3B3-202ENST00000562722 SERPINB2P05120 415 aa17.46■□□□□ 0.39
SF3B3-202ENST00000562722 A0A087WZG4 1122 aa17.45■□□□□ 0.38
SF3B3-202ENST00000562722 BCL2L12Q9HB09 334 aa17.45■□□□□ 0.38
SF3B3-202ENST00000562722 VIRMAQ69YN4 1812 aaKnown RBP17.44■□□□□ 0.38
SF3B3-202ENST00000562722 COL3A1P02461 1466 aaPredicted RBP17.44■□□□□ 0.38
SF3B3-202ENST00000562722 NPC1L1Q9UHC9 1359 aa17.44■□□□□ 0.38
SF3B3-202ENST00000562722 NPM2Q86SE8 214 aaKnown RBP17.44■□□□□ 0.38
SF3B3-202ENST00000562722 C2CD5Q86YS7 1000 aa17.44■□□□□ 0.38
SF3B3-202ENST00000562722 ZNF496Q96IT1 587 aaPredicted RBP17.44■□□□□ 0.38
SF3B3-202ENST00000562722 CFAP53Q96M91 514 aa17.44■□□□□ 0.38
SF3B3-202ENST00000562722 RASSF7Q02833 373 aa17.43■□□□□ 0.38
SF3B3-202ENST00000562722 IFFO2Q5TF58 517 aa17.43■□□□□ 0.38
SF3B3-202ENST00000562722 ZNF790Q6PG37 636 aa17.43■□□□□ 0.38
SF3B3-202ENST00000562722 IL17REQ8NFR9 667 aa17.43■□□□□ 0.38
SF3B3-202ENST00000562722 HEG1Q9ULI3 1381 aa17.42■□□□□ 0.38
SF3B3-202ENST00000562722 H0YIN7 160 aa17.42■□□□□ 0.38
SF3B3-202ENST00000562722 TTLL6Q8N841 843 aa17.42■□□□□ 0.38
SF3B3-202ENST00000562722 RBM46Q8TBY0 533 aaKnown RBP17.42■□□□□ 0.38
SF3B3-202ENST00000562722 TEX13AQ9BXU3 409 aaPredicted RBP17.42■□□□□ 0.38
SF3B3-202ENST00000562722 RRAGCQ9HB90 399 aa17.42■□□□□ 0.38
SF3B3-202ENST00000562722 UBR2Q8IWV8 1755 aa17.42■□□□□ 0.38
SF3B3-202ENST00000562722 PRKAR2BP31323 418 aa17.41■□□□□ 0.38
SF3B3-202ENST00000562722 EIF5P55010 431 aaKnown RBP17.41■□□□□ 0.38
SF3B3-202ENST00000562722 FMNL2Q96PY5 1086 aa17.41■□□□□ 0.38
SF3B3-202ENST00000562722 CARMIL3Q8ND23 1372 aa17.4■□□□□ 0.38
SF3B3-202ENST00000562722 AFDNP55196 1824 aaKnown RBP17.4■□□□□ 0.38
SF3B3-202ENST00000562722 NPHP1O15259 732 aa17.4■□□□□ 0.38
SF3B3-202ENST00000562722 TBC1D9BQ66K14 1250 aa17.4■□□□□ 0.38
SF3B3-202ENST00000562722 TBC1D2BQ9UPU7 963 aa17.4■□□□□ 0.38
SF3B3-202ENST00000562722 BTBD11A6QL63 1104 aa17.39■□□□□ 0.37
SF3B3-202ENST00000562722 LMNB1P20700 586 aa17.39■□□□□ 0.37
SF3B3-202ENST00000562722 ZNF622Q969S3 477 aaKnown RBP eCLIP17.39■□□□□ 0.37
SF3B3-202ENST00000562722 NUDCQ9Y266 331 aa17.39■□□□□ 0.37
SF3B3-202ENST00000562722 NRXN2Q9P2S2 1712 aa17.38■□□□□ 0.37
SF3B3-202ENST00000562722 IL6STP40189 918 aaPredicted RBP17.38■□□□□ 0.37
SF3B3-202ENST00000562722 FSTL1Q12841 308 aa17.38■□□□□ 0.37
SF3B3-202ENST00000562722 PHACTR3Q96KR7 559 aa17.38■□□□□ 0.37
SF3B3-202ENST00000562722 A1BGP04217 495 aa17.37■□□□□ 0.37
SF3B3-202ENST00000562722 CCDC24Q8N4L8 307 aa17.37■□□□□ 0.37
SF3B3-202ENST00000562722 RTF1Q92541 710 aaKnown RBP17.37■□□□□ 0.37
SF3B3-202ENST00000562722 ZNF219Q9P2Y4 722 aaPredicted RBP17.37■□□□□ 0.37
SF3B3-202ENST00000562722 ZC3H4Q9UPT8 1303 aaKnown RBP17.37■□□□□ 0.37
SF3B3-202ENST00000562722 U2AF1L5P0DN76 240 aaPredicted RBP17.36■□□□□ 0.37
SF3B3-202ENST00000562722 PDE6BP35913 854 aa17.36■□□□□ 0.37
SF3B3-202ENST00000562722 U2AF1Q01081 240 aaKnown RBP eCLIP17.36■□□□□ 0.37
SF3B3-202ENST00000562722 RSPH6AQ9H0K4 717 aa17.36■□□□□ 0.37
SF3B3-202ENST00000562722 CEMIPQ8WUJ3 1361 aa17.36■□□□□ 0.37
SF3B3-202ENST00000562722 DLEC1Q9Y238 1755 aa17.35■□□□□ 0.37
SF3B3-202ENST00000562722 KCNQ3O43525 872 aa17.35■□□□□ 0.37
SF3B3-202ENST00000562722 HTRA3P83110 453 aa17.35■□□□□ 0.37
SF3B3-202ENST00000562722 PRR5LQ6MZQ0 368 aa17.35■□□□□ 0.37
SF3B3-202ENST00000562722 CNBD1Q8NA66 436 aa17.35■□□□□ 0.37
SF3B3-202ENST00000562722 SMC1BQ8NDV3 1235 aa17.35■□□□□ 0.37
SF3B3-202ENST00000562722 SETDB2Q96T68 719 aa17.35■□□□□ 0.37
SF3B3-202ENST00000562722 BRIP1Q9BX63 1249 aa17.35■□□□□ 0.37
SF3B3-202ENST00000562722 SCN7AQ01118 1682 aa17.35■□□□□ 0.37
SF3B3-202ENST00000562722 TNRC6CQ9HCJ0 1690 aaKnown RBP17.35■□□□□ 0.37
SF3B3-202ENST00000562722 SIPA1L3O60292 1781 aaPredicted RBP17.34■□□□□ 0.37
SF3B3-202ENST00000562722 ST5P78524 1137 aa17.34■□□□□ 0.37
SF3B3-202ENST00000562722 DZIP3Q86Y13 1208 aaKnown RBP17.34■□□□□ 0.37
SF3B3-202ENST00000562722 DNAJC5GQ8N7S2 189 aa17.34■□□□□ 0.37
SF3B3-202ENST00000562722 PDZRN3Q9UPQ7 1066 aa17.34■□□□□ 0.37
SF3B3-202ENST00000562722 SBF1O95248 1867 aa17.33■□□□□ 0.37
SF3B3-202ENST00000562722 GLTPD2A6NH11 291 aa17.33■□□□□ 0.36
SF3B3-202ENST00000562722 NFKBIEO00221 500 aa17.33■□□□□ 0.36
SF3B3-202ENST00000562722 C21orf2O43822 256 aa17.33■□□□□ 0.36
SF3B3-202ENST00000562722 CAMTA2O94983 1202 aa17.33■□□□□ 0.36
SF3B3-202ENST00000562722 PIP4K2AP48426 406 aaPredicted RBP17.33■□□□□ 0.36
SF3B3-202ENST00000562722 MCM10Q7L590 875 aa17.33■□□□□ 0.36
SF3B3-202ENST00000562722 WDR90Q96KV7 1748 aa17.33■□□□□ 0.36
SF3B3-202ENST00000562722 VEGFAP15692 232 aaPredicted RBP17.32■□□□□ 0.36
SF3B3-202ENST00000562722 PPP2R1AP30153 589 aa17.32■□□□□ 0.36
SF3B3-202ENST00000562722 PRELPP51888 382 aa17.32■□□□□ 0.36
SF3B3-202ENST00000562722 USP16Q9Y5T5 823 aa17.32■□□□□ 0.36
SF3B3-202ENST00000562722 PRAMEF22A3QJZ6 481 aa17.3■□□□□ 0.36
SF3B3-202ENST00000562722 SNRPA1P09661 255 aaKnown RBP17.3■□□□□ 0.36
SF3B3-202ENST00000562722 DPY19L2Q6NUT2 758 aa17.3■□□□□ 0.36
SF3B3-202ENST00000562722 KLRG1Q96E93 195 aa17.3■□□□□ 0.36
SF3B3-202ENST00000562722 ZNF652Q9Y2D9 606 aa17.3■□□□□ 0.36
SF3B3-202ENST00000562722 TIAM2Q8IVF5 1701 aa17.3■□□□□ 0.36
SF3B3-202ENST00000562722 DCTN1Q14203 1278 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms