RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 ZNF790Q6PG37 636 aa21.74■■□□□ 1.07
SNX1-213ENST00000561026 NARFQ9UHQ1 456 aa21.74■■□□□ 1.07
SNX1-213ENST00000561026 N4BP2Q86UW6 1770 aaPredicted RBP21.73■■□□□ 1.07
SNX1-213ENST00000561026 POLRMTO00411 1230 aaKnown RBP21.73■■□□□ 1.07
SNX1-213ENST00000561026 STARD3NLO95772 234 aa21.73■■□□□ 1.07
SNX1-213ENST00000561026 ZNF496Q96IT1 587 aaPredicted RBP21.73■■□□□ 1.07
SNX1-213ENST00000561026 GPBP1L1Q9HC44 474 aaPredicted RBP21.73■■□□□ 1.07
SNX1-213ENST00000561026 COL15A1P39059 1388 aa21.72■■□□□ 1.07
SNX1-213ENST00000561026 CEMIPQ8WUJ3 1361 aa21.72■■□□□ 1.07
SNX1-213ENST00000561026 SENP3-EIF4A1A0A087X0R7 540 aa21.72■■□□□ 1.07
SNX1-213ENST00000561026 FCHSD2O94868 740 aa21.71■■□□□ 1.07
SNX1-213ENST00000561026 U2AF1L5P0DN76 240 aaPredicted RBP21.71■■□□□ 1.07
SNX1-213ENST00000561026 CANXP27824 592 aaKnown RBP21.71■■□□□ 1.07
SNX1-213ENST00000561026 U2AF1Q01081 240 aaKnown RBP eCLIP21.71■■□□□ 1.07
SNX1-213ENST00000561026 UBR2Q8IWV8 1755 aa21.71■■□□□ 1.07
SNX1-213ENST00000561026 NFIXQ14938 502 aa21.7■■□□□ 1.06
SNX1-213ENST00000561026 ZNF526Q8TF50 670 aaPredicted RBP21.7■■□□□ 1.06
SNX1-213ENST00000561026 PIM2Q9P1W9 311 aa21.7■■□□□ 1.06
SNX1-213ENST00000561026 HEG1Q9ULI3 1381 aa21.69■■□□□ 1.06
SNX1-213ENST00000561026 EIF5P55010 431 aaKnown RBP21.69■■□□□ 1.06
SNX1-213ENST00000561026 ARHGAP27Q6ZUM4 889 aa21.69■■□□□ 1.06
SNX1-213ENST00000561026 TEX13AQ9BXU3 409 aaPredicted RBP21.69■■□□□ 1.06
SNX1-213ENST00000561026 BCL2L12Q9HB09 334 aa21.69■■□□□ 1.06
SNX1-213ENST00000561026 FMNL2Q96PY5 1086 aa21.67■■□□□ 1.06
SNX1-213ENST00000561026 BTBD11A6QL63 1104 aa21.66■■□□□ 1.06
SNX1-213ENST00000561026 CHRNA5P30532 468 aa21.66■■□□□ 1.06
SNX1-213ENST00000561026 DALRD3Q5D0E6 543 aaKnown RBP21.66■■□□□ 1.06
SNX1-213ENST00000561026 SIPA1L3O60292 1781 aaPredicted RBP21.65■■□□□ 1.06
SNX1-213ENST00000561026 BRCA1P38398 1863 aaKnown RBP21.65■■□□□ 1.06
SNX1-213ENST00000561026 A0A087WZG4 1122 aa21.65■■□□□ 1.06
SNX1-213ENST00000561026 KCNQ3O43525 872 aa21.64■■□□□ 1.06
SNX1-213ENST00000561026 RTF1Q92541 710 aaKnown RBP21.64■■□□□ 1.06
SNX1-213ENST00000561026 SERPINB2P05120 415 aa21.63■■□□□ 1.05
SNX1-213ENST00000561026 IL6STP40189 918 aaPredicted RBP21.62■■□□□ 1.05
SNX1-213ENST00000561026 MCM10Q7L590 875 aa21.62■■□□□ 1.05
SNX1-213ENST00000561026 A1BGP04217 495 aa21.61■■□□□ 1.05
SNX1-213ENST00000561026 CEP350Q5VT06 3117 aa21.61■■□□□ 1.05
SNX1-213ENST00000561026 HTATSF1O43719 755 aaKnown RBP21.61■■□□□ 1.05
SNX1-213ENST00000561026 TBC1D2BQ9UPU7 963 aa21.61■■□□□ 1.05
SNX1-213ENST00000561026 ZNF330Q9Y3S2 320 aaPredicted RBP21.61■■□□□ 1.05
SNX1-213ENST00000561026 BICDL1Q6ZP65 573 aa21.6■■□□□ 1.05
SNX1-213ENST00000561026 USP16Q9Y5T5 823 aa21.6■■□□□ 1.05
SNX1-213ENST00000561026 ARFGEF1Q9Y6D6 1849 aa21.59■■□□□ 1.05
SNX1-213ENST00000561026 KIF3CO14782 793 aa21.59■■□□□ 1.05
SNX1-213ENST00000561026 DCTN1Q14203 1278 aa21.59■■□□□ 1.05
SNX1-213ENST00000561026 TBC1D9BQ66K14 1250 aa21.59■■□□□ 1.05
SNX1-213ENST00000561026 NRXN2Q9P2S2 1712 aa21.58■■□□□ 1.05
SNX1-213ENST00000561026 AFDNP55196 1824 aaKnown RBP21.58■■□□□ 1.04
SNX1-213ENST00000561026 C9orf131Q5VYM1 1079 aa21.58■■□□□ 1.04
SNX1-213ENST00000561026 NPM2Q86SE8 214 aaKnown RBP21.58■■□□□ 1.04
SNX1-213ENST00000561026 SNRPA1P09661 255 aaKnown RBP21.57■■□□□ 1.04
SNX1-213ENST00000561026 PRAMEF22A3QJZ6 481 aa21.56■■□□□ 1.04
SNX1-213ENST00000561026 CAMTA2O94983 1202 aa21.55■■□□□ 1.04
SNX1-213ENST00000561026 C2CD5Q86YS7 1000 aa21.55■■□□□ 1.04
SNX1-213ENST00000561026 CARMIL3Q8ND23 1372 aa21.55■■□□□ 1.04
SNX1-213ENST00000561026 H0YIN7 160 aa21.54■■□□□ 1.04
SNX1-213ENST00000561026 NEFMP07197 916 aa21.54■■□□□ 1.04
SNX1-213ENST00000561026 TAF7Q15545 349 aaPredicted RBP21.54■■□□□ 1.04
SNX1-213ENST00000561026 TTLL6Q8N841 843 aa21.54■■□□□ 1.04
SNX1-213ENST00000561026 DZIP3Q86Y13 1208 aaKnown RBP21.53■■□□□ 1.04
SNX1-213ENST00000561026 PLEKHF1Q96S99 279 aa21.53■■□□□ 1.04
SNX1-213ENST00000561026 SETDB2Q96T68 719 aa21.53■■□□□ 1.04
SNX1-213ENST00000561026 RNF181Q9P0P0 153 aa21.53■■□□□ 1.04
SNX1-213ENST00000561026 PIP4K2AP48426 406 aaPredicted RBP21.52■■□□□ 1.04
SNX1-213ENST00000561026 BRIP1Q9BX63 1249 aa21.52■■□□□ 1.04
SNX1-213ENST00000561026 SCN7AQ01118 1682 aa21.51■■□□□ 1.03
SNX1-213ENST00000561026 HSPA6P17066 643 aa21.51■■□□□ 1.03
SNX1-213ENST00000561026 PRR5LQ6MZQ0 368 aa21.51■■□□□ 1.03
SNX1-213ENST00000561026 NMRK2Q9NPI5 230 aa21.51■■□□□ 1.03
SNX1-213ENST00000561026 PDE6BP35913 854 aa21.5■■□□□ 1.03
SNX1-213ENST00000561026 MIS18AQ9NYP9 233 aa21.5■■□□□ 1.03
SNX1-213ENST00000561026 PDZRN3Q9UPQ7 1066 aa21.5■■□□□ 1.03
SNX1-213ENST00000561026 TOMM70O94826 608 aa21.49■■□□□ 1.03
SNX1-213ENST00000561026 CLEC4GQ6UXB4 293 aa21.49■■□□□ 1.03
SNX1-213ENST00000561026 CCDC24Q8N4L8 307 aa21.49■■□□□ 1.03
SNX1-213ENST00000561026 NBPF26B4DH59 902 aa21.48■■□□□ 1.03
SNX1-213ENST00000561026 NFE2L2Q16236 605 aa21.48■■□□□ 1.03
SNX1-213ENST00000561026 NBPF10Q6P3W6 841 aaKnown RBP21.48■■□□□ 1.03
SNX1-213ENST00000561026 NBPF15Q8N660 670 aa21.48■■□□□ 1.03
SNX1-213ENST00000561026 PNISRQ8TF01 805 aaKnown RBP21.48■■□□□ 1.03
SNX1-213ENST00000561026 PNNQ9H307 717 aaKnown RBP21.48■■□□□ 1.03
SNX1-213ENST00000561026 RASSF7Q02833 373 aa21.48■■□□□ 1.03
SNX1-213ENST00000561026 CNBD1Q8NA66 436 aa21.48■■□□□ 1.03
SNX1-213ENST00000561026 DLEC1Q9Y238 1755 aa21.47■■□□□ 1.03
SNX1-213ENST00000561026 KDM2BQ8NHM5 1336 aa21.47■■□□□ 1.03
SNX1-213ENST00000561026 RALBP1Q15311 655 aa21.47■■□□□ 1.03
SNX1-213ENST00000561026 ZNF622Q969S3 477 aaKnown RBP eCLIP21.47■■□□□ 1.035e-7■■■■□ 20.8
SNX1-213ENST00000561026 NPHP1O15259 732 aa21.46■■□□□ 1.03
SNX1-213ENST00000561026 LMNB1P20700 586 aa21.46■■□□□ 1.03
SNX1-213ENST00000561026 ZNF652Q9Y2D9 606 aa21.46■■□□□ 1.03
SNX1-213ENST00000561026 SBF1O95248 1867 aa21.45■■□□□ 1.02
SNX1-213ENST00000561026 RGL2O15211 777 aa21.45■■□□□ 1.02
SNX1-213ENST00000561026 PRELPP51888 382 aa21.45■■□□□ 1.02
SNX1-213ENST00000561026 ST5P78524 1137 aa21.45■■□□□ 1.02
SNX1-213ENST00000561026 THUMPD2Q9BTF0 503 aaKnown RBP21.45■■□□□ 1.02
SNX1-213ENST00000561026 ANKRD31Q8N7Z5 1873 aa21.44■■□□□ 1.02
SNX1-213ENST00000561026 MAPK8IP3Q9UPT6 1336 aa21.44■■□□□ 1.02
SNX1-213ENST00000561026 ZC3H4Q9UPT8 1303 aaKnown RBP21.44■■□□□ 1.02
SNX1-213ENST00000561026 NFKBIEO00221 500 aa21.43■■□□□ 1.02
SNX1-213ENST00000561026 SRGNP10124 158 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms