RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 CCDC87Q9NVE4 849 aa13.03□□□□□ -0.32
USP3-216ENST00000559873 ERBB4Q15303 1308 aa13.03□□□□□ -0.32
USP3-216ENST00000559873 CYP19A1P11511 503 aaPredicted RBP13.02□□□□□ -0.33
USP3-216ENST00000559873 ADRA2BP18089 450 aa13.02□□□□□ -0.33
USP3-216ENST00000559873 CRKLP46109 303 aaKnown RBP13.02□□□□□ -0.33
USP3-216ENST00000559873 TSR2Q969E8 191 aaKnown RBP13.02□□□□□ -0.33
USP3-216ENST00000559873 AKT1S1Q96B36 256 aa13.02□□□□□ -0.33
USP3-216ENST00000559873 ANO8Q9HCE9 1232 aaPredicted RBP13.02□□□□□ -0.33
USP3-216ENST00000559873 RTCBQ9Y3I0 505 aaKnown RBP13.02□□□□□ -0.33
USP3-216ENST00000559873 QSER1Q2KHR3 1735 aa13.02□□□□□ -0.33
USP3-216ENST00000559873 SSFA2P28290 1259 aa13.01□□□□□ -0.33
USP3-216ENST00000559873 ZNF827Q17R98 1081 aa13.01□□□□□ -0.33
USP3-216ENST00000559873 DUSP27Q5VZP5 1158 aa13.01□□□□□ -0.33
USP3-216ENST00000559873 A0A087WZG4 1122 aa13□□□□□ -0.33
USP3-216ENST00000559873 RPS6KA4O75676 772 aa13□□□□□ -0.33
USP3-216ENST00000559873 HDGFL1Q5TGJ6 251 aa13□□□□□ -0.33
USP3-216ENST00000559873 COL15A1P39059 1388 aa12.99□□□□□ -0.33
USP3-216ENST00000559873 IL6STP40189 918 aaPredicted RBP12.99□□□□□ -0.33
USP3-216ENST00000559873 SLFN5Q08AF3 891 aa12.99□□□□□ -0.33
USP3-216ENST00000559873 R3HDM1Q15032 1099 aaKnown RBP12.99□□□□□ -0.33
USP3-216ENST00000559873 TWISTNBQ3B726 338 aaPredicted RBP12.99□□□□□ -0.33
USP3-216ENST00000559873 ZBTB1Q9Y2K1 713 aa12.99□□□□□ -0.33
USP3-216ENST00000559873 USP16Q9Y5T5 823 aa12.99□□□□□ -0.33
USP3-216ENST00000559873 UBR3Q6ZT12 1888 aa12.99□□□□□ -0.33
USP3-216ENST00000559873 PNPLA7Q6ZV29 1317 aa12.98□□□□□ -0.33
USP3-216ENST00000559873 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.98□□□□□ -0.33
USP3-216ENST00000559873 PRAMEF22A3QJZ6 481 aa12.98□□□□□ -0.33
USP3-216ENST00000559873 PHF14O94880 888 aa12.98□□□□□ -0.33
USP3-216ENST00000559873 EIF2S2P20042 333 aaKnown RBP12.98□□□□□ -0.33
USP3-216ENST00000559873 CANXP27824 592 aaKnown RBP12.98□□□□□ -0.33
USP3-216ENST00000559873 TRAPPC3LQ5T215 181 aa12.98□□□□□ -0.33
USP3-216ENST00000559873 INTS5Q6P9B9 1019 aaKnown RBP12.98□□□□□ -0.33
USP3-216ENST00000559873 SPINK5Q9NQ38 1064 aaPredicted RBP12.98□□□□□ -0.33
USP3-216ENST00000559873 MSH5O43196 834 aa12.97□□□□□ -0.33
USP3-216ENST00000559873 CT47B1P0C2W7 299 aaPredicted RBP12.97□□□□□ -0.33
USP3-216ENST00000559873 EXOSC9Q06265 439 aaKnown RBP12.97□□□□□ -0.33
USP3-216ENST00000559873 KRT24Q2M2I5 525 aa12.97□□□□□ -0.33
USP3-216ENST00000559873 CCDC30Q5VVM6 783 aa12.97□□□□□ -0.33
USP3-216ENST00000559873 C8orf58Q8NAV2 365 aa12.97□□□□□ -0.33
USP3-216ENST00000559873 STK31Q9BXU1 1019 aa12.97□□□□□ -0.33
USP3-216ENST00000559873 ZNF330Q9Y3S2 320 aaPredicted RBP12.97□□□□□ -0.33
USP3-216ENST00000559873 MYH14Q7Z406 1995 aaKnown RBP12.96□□□□□ -0.33
USP3-216ENST00000559873 PSDA5PKW4 1024 aaPredicted RBP12.96□□□□□ -0.33
USP3-216ENST00000559873 ELL2O00472 640 aaPredicted RBP12.96□□□□□ -0.33
USP3-216ENST00000559873 A1BGP04217 495 aa12.96□□□□□ -0.33
USP3-216ENST00000559873 RFC4P35249 363 aa12.96□□□□□ -0.33
USP3-216ENST00000559873 SLC16A10Q8TF71 515 aa12.96□□□□□ -0.33
USP3-216ENST00000559873 ZNF428Q96B54 188 aa12.96□□□□□ -0.33
USP3-216ENST00000559873 CDCA7LQ96GN5 454 aa12.96□□□□□ -0.33
USP3-216ENST00000559873 YTHDC1Q96MU7 727 aaKnown RBP12.96□□□□□ -0.33
USP3-216ENST00000559873 DBF4Q9UBU7 674 aaPredicted RBP12.96□□□□□ -0.33
USP3-216ENST00000559873 TUBGCP6Q96RT7 1819 aa12.96□□□□□ -0.33
USP3-216ENST00000559873 ZPR1O75312 459 aa12.95□□□□□ -0.34
USP3-216ENST00000559873 EIF5P55010 431 aaKnown RBP12.95□□□□□ -0.34
USP3-216ENST00000559873 KIF6Q6ZMV9 814 aa12.95□□□□□ -0.34
USP3-216ENST00000559873 DDX21Q9NR30 783 aaKnown RBP eCLIP12.95□□□□□ -0.34
USP3-216ENST00000559873 MYL6BP14649 208 aa12.94□□□□□ -0.34
USP3-216ENST00000559873 TRMT2AQ8IZ69 625 aaKnown RBP12.94□□□□□ -0.34
USP3-216ENST00000559873 NECTIN2Q92692 538 aa12.94□□□□□ -0.34
USP3-216ENST00000559873 HYPKQ9NX55 129 aa12.94□□□□□ -0.34
USP3-216ENST00000559873 CHPF2Q9P2E5 772 aa12.94□□□□□ -0.34
USP3-216ENST00000559873 CASZ1Q86V15 1759 aa12.94□□□□□ -0.34
USP3-216ENST00000559873 C4AP0C0L4 1744 aa12.93□□□□□ -0.34
USP3-216ENST00000559873 USP42Q9H9J4 1324 aaKnown RBP12.93□□□□□ -0.34
USP3-216ENST00000559873 NBPF26B4DH59 902 aa12.93□□□□□ -0.34
USP3-216ENST00000559873 RGL2O15211 777 aa12.93□□□□□ -0.34
USP3-216ENST00000559873 VAMP4O75379 141 aa12.93□□□□□ -0.34
USP3-216ENST00000559873 NBPF10Q6P3W6 841 aaKnown RBP12.93□□□□□ -0.34
USP3-216ENST00000559873 COL23A1Q86Y22 540 aaPredicted RBP12.93□□□□□ -0.34
USP3-216ENST00000559873 NBPF15Q8N660 670 aa12.93□□□□□ -0.34
USP3-216ENST00000559873 TSPYL6Q8N831 410 aa12.93□□□□□ -0.34
USP3-216ENST00000559873 ARXQ96QS3 562 aa12.93□□□□□ -0.34
USP3-216ENST00000559873 MTFR1LQ9H019 292 aa12.93□□□□□ -0.34
USP3-216ENST00000559873 NARFQ9UHQ1 456 aa12.93□□□□□ -0.34
USP3-216ENST00000559873 ZNF652Q9Y2D9 606 aa12.93□□□□□ -0.34
USP3-216ENST00000559873 SCN7AQ01118 1682 aa12.93□□□□□ -0.34
USP3-216ENST00000559873 PIP4K2AP48426 406 aaPredicted RBP12.92□□□□□ -0.34
USP3-216ENST00000559873 DZIP3Q86Y13 1208 aaKnown RBP12.92□□□□□ -0.34
USP3-216ENST00000559873 ARHGEF1Q92888 912 aaKnown RBP12.92□□□□□ -0.34
USP3-216ENST00000559873 DDX58O95786 925 aaKnown RBP12.91□□□□□ -0.34
USP3-216ENST00000559873 PDIA6Q15084 440 aa12.91□□□□□ -0.34
USP3-216ENST00000559873 AMIGO3Q86WK7 504 aa12.91□□□□□ -0.34
USP3-216ENST00000559873 POLD1P28340 1107 aa12.9□□□□□ -0.34
USP3-216ENST00000559873 NLGN1Q8N2Q7 840 aa12.9□□□□□ -0.34
USP3-216ENST00000559873 BCORQ6W2J9 1755 aa12.89□□□□□ -0.35
USP3-216ENST00000559873 ERVV-1B6SEH8 477 aa12.89□□□□□ -0.35
USP3-216ENST00000559873 ZBTB7AO95365 584 aa12.89□□□□□ -0.35
USP3-216ENST00000559873 ANXA1P04083 346 aa12.89□□□□□ -0.35
USP3-216ENST00000559873 PROSER3Q2NL68 480 aa12.89□□□□□ -0.35
USP3-216ENST00000559873 ALDH1L2Q3SY69 923 aa12.89□□□□□ -0.35
USP3-216ENST00000559873 HSP90AB3PQ58FF7 597 aa12.89□□□□□ -0.35
USP3-216ENST00000559873 USPL1Q5W0Q7 1092 aa12.89□□□□□ -0.35
USP3-216ENST00000559873 XAGE3Q8WTP9 111 aa12.89□□□□□ -0.35
USP3-216ENST00000559873 TBC1D2BQ9UPU7 963 aa12.89□□□□□ -0.35
USP3-216ENST00000559873 MAP3K15Q6ZN16 1313 aa12.88□□□□□ -0.35
USP3-216ENST00000559873 SLC4A2P04920 1241 aa12.88□□□□□ -0.35
USP3-216ENST00000559873 GYS1P13807 737 aa12.88□□□□□ -0.35
USP3-216ENST00000559873 AIMP1Q12904 312 aaKnown RBP12.88□□□□□ -0.35
USP3-216ENST00000559873 CLEC4GQ6UXB4 293 aa12.88□□□□□ -0.35
USP3-216ENST00000559873 COPS6Q7L5N1 327 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms