RNA–Protein interactions for RNA: ENST00000555405.5

NEK9-205, Transcript of NIMA related kinase 9, humanhuman

TSL 1 (best)

Gene NEK9, Length 3,357 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-205ENST00000555405 PDE3AQ14432 1141 aa12.9□□□□□ -0.34
NEK9-205ENST00000555405 SKAP1Q86WV1 359 aa12.9□□□□□ -0.34
NEK9-205ENST00000555405 FAM208AQ9UK61 1670 aaKnown RBP12.9□□□□□ -0.34
NEK9-205ENST00000555405 APBB1O00213 710 aa12.9□□□□□ -0.34
NEK9-205ENST00000555405 ILDR1Q86SU0 546 aaPredicted RBP12.9□□□□□ -0.34
NEK9-205ENST00000555405 MVPQ14764 893 aaKnown RBP12.9□□□□□ -0.34
NEK9-205ENST00000555405 ATP5J2-PTCD1G3V325 749 aa12.89□□□□□ -0.35
NEK9-205ENST00000555405 EP400Q96L91 3159 aa12.89□□□□□ -0.35
NEK9-205ENST00000555405 STARD3NLO95772 234 aa12.89□□□□□ -0.35
NEK9-205ENST00000555405 PLCH1Q4KWH8 1693 aa12.89□□□□□ -0.35
NEK9-205ENST00000555405 TBC1D2BQ9UPU7 963 aa12.89□□□□□ -0.35
NEK9-205ENST00000555405 MAP3K2Q9Y2U5 619 aa12.89□□□□□ -0.35
NEK9-205ENST00000555405 LOC102724428A0A0B4J2F2 783 aa12.88□□□□□ -0.35
NEK9-205ENST00000555405 SIK1P57059 783 aa12.88□□□□□ -0.35
NEK9-205ENST00000555405 DISP2A7MBM2 1401 aa12.88□□□□□ -0.35
NEK9-205ENST00000555405 TTLL7Q6ZT98 887 aa12.88□□□□□ -0.35
NEK9-205ENST00000555405 DDX21Q9NR30 783 aaKnown RBP eCLIP12.88□□□□□ -0.35
NEK9-205ENST00000555405 TNS2Q63HR2 1409 aa12.88□□□□□ -0.35
NEK9-205ENST00000555405 SLC4A9Q96Q91 983 aa12.87□□□□□ -0.35
NEK9-205ENST00000555405 ABCC6O95255 1503 aa12.87□□□□□ -0.35
NEK9-205ENST00000555405 CWF19L2Q2TBE0 894 aaKnown RBP12.87□□□□□ -0.35
NEK9-205ENST00000555405 DDX19BQ9UMR2 479 aa12.87□□□□□ -0.35
NEK9-205ENST00000555405 HEG1Q9ULI3 1381 aa12.87□□□□□ -0.35
NEK9-205ENST00000555405 MYD88Q99836 296 aa12.87□□□□□ -0.35
NEK9-205ENST00000555405 CHMP4AQ9BY43 222 aa12.87□□□□□ -0.35
NEK9-205ENST00000555405 HYPKQ9NX55 129 aa12.87□□□□□ -0.35
NEK9-205ENST00000555405 ZBTB1Q9Y2K1 713 aa12.87□□□□□ -0.35
NEK9-205ENST00000555405 PHF14O94880 888 aa12.86□□□□□ -0.35
NEK9-205ENST00000555405 DDX58O95786 925 aaKnown RBP12.86□□□□□ -0.35
NEK9-205ENST00000555405 DNAAF4Q8WXU2 420 aa12.86□□□□□ -0.35
NEK9-205ENST00000555405 RGS17Q9UGC6 210 aaPredicted RBP12.86□□□□□ -0.35
NEK9-205ENST00000555405 NBPF26B4DH59 902 aa12.86□□□□□ -0.35
NEK9-205ENST00000555405 MSH5O43196 834 aa12.86□□□□□ -0.35
NEK9-205ENST00000555405 NBPF14Q5TI25 921 aa12.86□□□□□ -0.35
NEK9-205ENST00000555405 NBPF10Q6P3W6 841 aaKnown RBP12.86□□□□□ -0.35
NEK9-205ENST00000555405 NBPF15Q8N660 670 aa12.86□□□□□ -0.35
NEK9-205ENST00000555405 MEIS3Q99687 375 aa12.86□□□□□ -0.35
NEK9-205ENST00000555405 GPTP24298 496 aa12.86□□□□□ -0.35
NEK9-205ENST00000555405 C9orf78Q9NZ63 289 aaPredicted RBP12.86□□□□□ -0.35
NEK9-205ENST00000555405 ANKRD13DQ6ZTN6 518 aa12.85□□□□□ -0.35
NEK9-205ENST00000555405 CCNL1Q9UK58 526 aaPredicted RBP12.85□□□□□ -0.35
NEK9-205ENST00000555405 PALLDQ8WX93 1383 aa12.85□□□□□ -0.35
NEK9-205ENST00000555405 APBA3O96018 575 aa12.85□□□□□ -0.35
NEK9-205ENST00000555405 PCDHB15Q9Y5E8 787 aa12.85□□□□□ -0.35
NEK9-205ENST00000555405 HOXB7P09629 217 aa12.84□□□□□ -0.35
NEK9-205ENST00000555405 SRCIN1Q9C0H9 1055 aa12.84□□□□□ -0.35
NEK9-205ENST00000555405 RGS3P49796 1198 aa12.84□□□□□ -0.35
NEK9-205ENST00000555405 NEXNQ0ZGT2 675 aa12.84□□□□□ -0.35
NEK9-205ENST00000555405 ITPK1Q13572 414 aa12.84□□□□□ -0.35
NEK9-205ENST00000555405 BICDL1Q6ZP65 573 aa12.84□□□□□ -0.35
NEK9-205ENST00000555405 FAM196AQ6ZSG2 479 aa12.84□□□□□ -0.35
NEK9-205ENST00000555405 PDIA6Q15084 440 aa12.84□□□□□ -0.35
NEK9-205ENST00000555405 SMARCC1Q92922 1105 aaPredicted RBP12.84□□□□□ -0.35
NEK9-205ENST00000555405 PTPRCP08575 1304 aa12.84□□□□□ -0.35
NEK9-205ENST00000555405 ARHGAP45Q92619 1136 aa12.83□□□□□ -0.36
NEK9-205ENST00000555405 BCL9O00512 1426 aa12.83□□□□□ -0.36
NEK9-205ENST00000555405 ATRNO75882 1429 aa12.83□□□□□ -0.36
NEK9-205ENST00000555405 CRKLP46109 303 aaKnown RBP12.83□□□□□ -0.36
NEK9-205ENST00000555405 KSR2Q6VAB6 950 aa12.83□□□□□ -0.36
NEK9-205ENST00000555405 IGHDP01880 384 aa12.82□□□□□ -0.36
NEK9-205ENST00000555405 CCDC85AQ96PX6 553 aaPredicted RBP12.82□□□□□ -0.36
NEK9-205ENST00000555405 TEX13AQ9BXU3 409 aaPredicted RBP12.82□□□□□ -0.36
NEK9-205ENST00000555405 CHMP3Q9Y3E7 222 aa12.82□□□□□ -0.36
NEK9-205ENST00000555405 PARP4Q9UKK3 1724 aaKnown RBP12.82□□□□□ -0.36
NEK9-205ENST00000555405 KIF6Q6ZMV9 814 aa12.82□□□□□ -0.36
NEK9-205ENST00000555405 CYP19A1P11511 503 aaPredicted RBP12.81□□□□□ -0.36
NEK9-205ENST00000555405 GNPATO15228 680 aa12.81□□□□□ -0.36
NEK9-205ENST00000555405 UBTFL1P0CB47 393 aaPredicted RBP12.81□□□□□ -0.36
NEK9-205ENST00000555405 CCT4P50991 539 aaKnown RBP12.81□□□□□ -0.36
NEK9-205ENST00000555405 ZBTB7BO15156 539 aaPredicted RBP12.81□□□□□ -0.36
NEK9-205ENST00000555405 ONECUT3O60422 494 aaPredicted RBP12.81□□□□□ -0.36
NEK9-205ENST00000555405 NPHP1O15259 732 aa12.8□□□□□ -0.36
NEK9-205ENST00000555405 ERICH6BQ5W0A0 696 aa12.8□□□□□ -0.36
NEK9-205ENST00000555405 DZIP3Q86Y13 1208 aaKnown RBP12.8□□□□□ -0.36
NEK9-205ENST00000555405 CCDC87Q9NVE4 849 aa12.8□□□□□ -0.36
NEK9-205ENST00000555405 LRRFIP2Q9Y608 721 aaKnown RBP12.8□□□□□ -0.36
NEK9-205ENST00000555405 NBPF7P0C2Y1 421 aaPredicted RBP12.8□□□□□ -0.36
NEK9-205ENST00000555405 ABCC4O15439 1325 aa12.79□□□□□ -0.36
NEK9-205ENST00000555405 NRAPQ86VF7 1730 aa12.79□□□□□ -0.36
NEK9-205ENST00000555405 BRPF1P55201 1214 aaPredicted RBP12.79□□□□□ -0.36
NEK9-205ENST00000555405 LINC00116Q8NCU8 138 aa12.79□□□□□ -0.36
NEK9-205ENST00000555405 ZBTB47Q9UFB7 747 aaPredicted RBP12.79□□□□□ -0.36
NEK9-205ENST00000555405 GLI3P10071 1580 aa12.79□□□□□ -0.36
NEK9-205ENST00000555405 HLFQ16534 295 aa12.78□□□□□ -0.36
NEK9-205ENST00000555405 BCL11BQ9C0K0 894 aaPredicted RBP12.78□□□□□ -0.36
NEK9-205ENST00000555405 RWDD1Q9H446 243 aaPredicted RBP12.78□□□□□ -0.36
NEK9-205ENST00000555405 ZBTB40Q9NUA8 1239 aa12.78□□□□□ -0.36
NEK9-205ENST00000555405 SOS1Q07889 1333 aaPredicted RBP12.78□□□□□ -0.36
NEK9-205ENST00000555405 A0A087WZG4 1122 aa12.78□□□□□ -0.36
NEK9-205ENST00000555405 INTS3Q68E01 1043 aaKnown RBP12.78□□□□□ -0.36
NEK9-205ENST00000555405 UBE3BQ7Z3V4 1068 aa12.78□□□□□ -0.36
NEK9-205ENST00000555405 CCDC24Q8N4L8 307 aa12.78□□□□□ -0.36
NEK9-205ENST00000555405 AK7Q96M32 723 aa12.78□□□□□ -0.36
NEK9-205ENST00000555405 NWD2Q9ULI1 1742 aa12.78□□□□□ -0.36
NEK9-205ENST00000555405 SCN11AQ9UI33 1791 aa12.77□□□□□ -0.36
NEK9-205ENST00000555405 SF3B2Q13435 895 aaKnown RBP12.77□□□□□ -0.36
NEK9-205ENST00000555405 BEND3Q5T5X7 828 aa12.77□□□□□ -0.36
NEK9-205ENST00000555405 GNAI2P04899 355 aa12.77□□□□□ -0.37
NEK9-205ENST00000555405 GTF2E1P29083 439 aaPredicted RBP12.77□□□□□ -0.37
NEK9-205ENST00000555405 VSIG10Q8N0Z9 540 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms