RNA–Protein interactions for RNA: ENST00000545042.1

DDX55-213, Transcript of DEAD-box helicase 55, humanhuman

TSL 5

Gene DDX55, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-213ENST00000545042 TMPOP42166 694 aaKnown RBP17.46■□□□□ 0.39
DDX55-213ENST00000545042 ADAMTS8Q9UP79 889 aa17.46■□□□□ 0.39
DDX55-213ENST00000545042 SOS1Q07889 1333 aaPredicted RBP17.46■□□□□ 0.38
DDX55-213ENST00000545042 ZPR1O75312 459 aa17.45■□□□□ 0.38
DDX55-213ENST00000545042 ZBTB1Q9Y2K1 713 aa17.45■□□□□ 0.38
DDX55-213ENST00000545042 MMP10P09238 476 aa17.44■□□□□ 0.38
DDX55-213ENST00000545042 SNRPA1P09661 255 aaKnown RBP17.44■□□□□ 0.38
DDX55-213ENST00000545042 GYS1P13807 737 aa17.44■□□□□ 0.38
DDX55-213ENST00000545042 CANXP27824 592 aaKnown RBP17.44■□□□□ 0.38
DDX55-213ENST00000545042 NPM2Q86SE8 214 aaKnown RBP17.44■□□□□ 0.38
DDX55-213ENST00000545042 CD2APQ9Y5K6 639 aa17.44■□□□□ 0.38
DDX55-213ENST00000545042 USP42Q9H9J4 1324 aaKnown RBP17.44■□□□□ 0.38
DDX55-213ENST00000545042 THUMPD2Q9BTF0 503 aaKnown RBP17.43■□□□□ 0.38
DDX55-213ENST00000545042 MIS18AQ9NYP9 233 aa17.43■□□□□ 0.38
DDX55-213ENST00000545042 COL15A1P39059 1388 aa17.42■□□□□ 0.38
DDX55-213ENST00000545042 C4AP0C0L4 1744 aa17.42■□□□□ 0.38
DDX55-213ENST00000545042 A0A087WZG4 1122 aa17.42■□□□□ 0.38
DDX55-213ENST00000545042 NEUROD2Q15784 382 aa17.42■□□□□ 0.38
DDX55-213ENST00000545042 SRP68Q9UHB9 627 aaKnown RBP17.42■□□□□ 0.38
DDX55-213ENST00000545042 RRP7AQ9Y3A4 280 aaKnown RBP17.42■□□□□ 0.38
DDX55-213ENST00000545042 PARP3Q9Y6F1 533 aa17.42■□□□□ 0.38
DDX55-213ENST00000545042 NARFQ9UHQ1 456 aa17.41■□□□□ 0.38
DDX55-213ENST00000545042 ZNF330Q9Y3S2 320 aaPredicted RBP17.41■□□□□ 0.38
DDX55-213ENST00000545042 IL6STP40189 918 aaPredicted RBP17.4■□□□□ 0.38
DDX55-213ENST00000545042 EIF5P55010 431 aaKnown RBP17.4■□□□□ 0.38
DDX55-213ENST00000545042 NLGN2Q8NFZ4 835 aa17.4■□□□□ 0.38
DDX55-213ENST00000545042 A1BGP04217 495 aa17.39■□□□□ 0.37
DDX55-213ENST00000545042 FKBP8Q14318 412 aa17.39■□□□□ 0.37
DDX55-213ENST00000545042 GPR162Q16538 588 aa17.39■□□□□ 0.37
DDX55-213ENST00000545042 USPL1Q5W0Q7 1092 aa17.39■□□□□ 0.37
DDX55-213ENST00000545042 PELP1Q8IZL8 1130 aaKnown RBP17.39■□□□□ 0.37
DDX55-213ENST00000545042 TSPYL4Q9UJ04 414 aa17.39■□□□□ 0.37
DDX55-213ENST00000545042 USP16Q9Y5T5 823 aa17.39■□□□□ 0.37
DDX55-213ENST00000545042 BABAM1Q9NWV8 329 aa17.38■□□□□ 0.37
DDX55-213ENST00000545042 PRAMEF22A3QJZ6 481 aa17.37■□□□□ 0.37
DDX55-213ENST00000545042 EIF4A1P60842 406 aaKnown RBP17.37■□□□□ 0.37
DDX55-213ENST00000545042 MRS2Q9HD23 443 aa17.37■□□□□ 0.37
DDX55-213ENST00000545042 KDM3BQ7LBC6 1761 aa17.36■□□□□ 0.37
DDX55-213ENST00000545042 APAF1O14727 1248 aa17.35■□□□□ 0.37
DDX55-213ENST00000545042 GIGYF1O75420 1035 aaPredicted RBP17.35■□□□□ 0.37
DDX55-213ENST00000545042 CCDC184Q52MB2 194 aa17.35■□□□□ 0.37
DDX55-213ENST00000545042 TRIM35Q9UPQ4 493 aa17.35■□□□□ 0.37
DDX55-213ENST00000545042 TM4SF1P30408 202 aa17.34■□□□□ 0.37
DDX55-213ENST00000545042 TBC1D2BQ9UPU7 963 aa17.34■□□□□ 0.37
DDX55-213ENST00000545042 CALD1Q05682 793 aaKnown RBP17.33■□□□□ 0.36
DDX55-213ENST00000545042 DZIP3Q86Y13 1208 aaKnown RBP17.33■□□□□ 0.36
DDX55-213ENST00000545042 LAS1LQ9Y4W2 734 aaKnown RBP17.33■□□□□ 0.36
DDX55-213ENST00000545042 C10orf71Q711Q0 1435 aa17.32■□□□□ 0.36
DDX55-213ENST00000545042 POLRMTO00411 1230 aaKnown RBP17.32■□□□□ 0.36
DDX55-213ENST00000545042 PIP4K2AP48426 406 aaPredicted RBP17.32■□□□□ 0.36
DDX55-213ENST00000545042 TGFB2P61812 414 aa17.32■□□□□ 0.36
DDX55-213ENST00000545042 DDR1Q08345 913 aa17.32■□□□□ 0.36
DDX55-213ENST00000545042 NFIXQ14938 502 aa17.32■□□□□ 0.36
DDX55-213ENST00000545042 BCL2L12Q9HB09 334 aa17.32■□□□□ 0.36
DDX55-213ENST00000545042 LAMB4A4D0S4 1761 aa17.31■□□□□ 0.36
DDX55-213ENST00000545042 GRIN3BO60391 1043 aa17.31■□□□□ 0.36
DDX55-213ENST00000545042 NBPF26B4DH59 902 aa17.3■□□□□ 0.36
DDX55-213ENST00000545042 CHL1O00533 1208 aa17.3■□□□□ 0.36
DDX55-213ENST00000545042 YY1P25490 414 aa17.3■□□□□ 0.36
DDX55-213ENST00000545042 NBPF10Q6P3W6 841 aaKnown RBP17.3■□□□□ 0.36
DDX55-213ENST00000545042 BICDL1Q6ZP65 573 aa17.3■□□□□ 0.36
DDX55-213ENST00000545042 NBPF15Q8N660 670 aa17.3■□□□□ 0.36
DDX55-213ENST00000545042 ZNF652Q9Y2D9 606 aa17.3■□□□□ 0.36
DDX55-213ENST00000545042 CAMTA2O94983 1202 aa17.29■□□□□ 0.36
DDX55-213ENST00000545042 SERPINB2P05120 415 aa17.29■□□□□ 0.36
DDX55-213ENST00000545042 CFAP44Q96MT7 982 aa17.29■□□□□ 0.36
DDX55-213ENST00000545042 SCN7AQ01118 1682 aa17.29■□□□□ 0.36
DDX55-213ENST00000545042 KIF13BQ9NQT8 1826 aa17.28■□□□□ 0.36
DDX55-213ENST00000545042 ERBB4Q15303 1308 aa17.28■□□□□ 0.36
DDX55-213ENST00000545042 GOLGB1Q14789 3259 aaKnown RBP17.28■□□□□ 0.36
DDX55-213ENST00000545042 YBX3P16989 372 aaKnown RBP eCLIP17.28■□□□□ 0.36
DDX55-213ENST00000545042 TBC1D9BQ66K14 1250 aa17.28■□□□□ 0.36
DDX55-213ENST00000545042 CLEC4GQ6UXB4 293 aa17.28■□□□□ 0.36
DDX55-213ENST00000545042 SETDB2Q96T68 719 aa17.28■□□□□ 0.36
DDX55-213ENST00000545042 PXDNLA1KZ92 1463 aa17.27■□□□□ 0.36
DDX55-213ENST00000545042 A0A0G2JLW4 131 aa17.27■□□□□ 0.36
DDX55-213ENST00000545042 RGL2O15211 777 aa17.27■□□□□ 0.36
DDX55-213ENST00000545042 NPHP1O15259 732 aa17.27■□□□□ 0.36
DDX55-213ENST00000545042 EIF2S2P20042 333 aaKnown RBP17.27■□□□□ 0.36
DDX55-213ENST00000545042 NGEFQ8N5V2 710 aa17.27■□□□□ 0.36
DDX55-213ENST00000545042 CARMIL3Q8ND23 1372 aa17.27■□□□□ 0.35
DDX55-213ENST00000545042 MYL6BP14649 208 aa17.26■□□□□ 0.35
DDX55-213ENST00000545042 DPEP1P16444 411 aa17.26■□□□□ 0.35
DDX55-213ENST00000545042 GNAI1P63096 354 aa17.26■□□□□ 0.35
DDX55-213ENST00000545042 KIF6Q6ZMV9 814 aa17.26■□□□□ 0.35
DDX55-213ENST00000545042 IFT57Q9NWB7 429 aa17.26■□□□□ 0.35
DDX55-213ENST00000545042 WWC3Q9ULE0 1092 aa17.26■□□□□ 0.35
DDX55-213ENST00000545042 UTRNP46939 3433 aa17.24■□□□□ 0.35
DDX55-213ENST00000545042 MBIPQ9NS73 344 aa17.24■□□□□ 0.35
DDX55-213ENST00000545042 BCORQ6W2J9 1755 aa17.24■□□□□ 0.35
DDX55-213ENST00000545042 N4BP2Q86UW6 1770 aaPredicted RBP17.23■□□□□ 0.35
DDX55-213ENST00000545042 ERVV-1B6SEH8 477 aa17.23■□□□□ 0.35
DDX55-213ENST00000545042 HOXB7P09629 217 aa17.23■□□□□ 0.35
DDX55-213ENST00000545042 CCDC27Q2M243 656 aa17.23■□□□□ 0.35
DDX55-213ENST00000545042 CNBD1Q8NA66 436 aa17.23■□□□□ 0.35
DDX55-213ENST00000545042 PIM2Q9P1W9 311 aa17.23■□□□□ 0.35
DDX55-213ENST00000545042 BCS1LQ9Y276 419 aa17.23■□□□□ 0.35
DDX55-213ENST00000545042 AFDNP55196 1824 aaKnown RBP17.23■□□□□ 0.35
DDX55-213ENST00000545042 CHD4Q14839 1912 aa17.23■□□□□ 0.35
DDX55-213ENST00000545042 NRXN2Q9P2S2 1712 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms