RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 TRIM6-TRIM34B2RNG4 842 aa22.07■■□□□ 1.12
VIM-209ENST00000544301 SRGAP3O43295 1099 aa22.07■■□□□ 1.12
VIM-209ENST00000544301 ST18O60284 1047 aa22.07■■□□□ 1.12
VIM-209ENST00000544301 CHMLP26374 656 aa22.07■■□□□ 1.12
VIM-209ENST00000544301 ZC3H6P61129 1189 aaKnown RBP22.07■■□□□ 1.12
VIM-209ENST00000544301 L1TD1Q5T7N2 865 aaKnown RBP22.07■■□□□ 1.12
VIM-209ENST00000544301 RILPL2Q969X0 211 aa22.07■■□□□ 1.12
VIM-209ENST00000544301 LMTK3Q96Q04 1460 aa22.07■■□□□ 1.12
VIM-209ENST00000544301 SIPA1L3O60292 1781 aaPredicted RBP22.07■■□□□ 1.12
VIM-209ENST00000544301 ADAMTS7Q9UKP4 1686 aa22.06■■□□□ 1.12
VIM-209ENST00000544301 SSFA2P28290 1259 aa22.06■■□□□ 1.12
VIM-209ENST00000544301 PROSER3Q2NL68 480 aa22.06■■□□□ 1.12
VIM-209ENST00000544301 RHPN1Q8TCX5 695 aa22.06■■□□□ 1.12
VIM-209ENST00000544301 NUTM1Q86Y26 1132 aa22.05■■□□□ 1.12
VIM-209ENST00000544301 UNC5CLQ8IV45 518 aa22.05■■□□□ 1.12
VIM-209ENST00000544301 FSD2A1L4K1 749 aa22.04■■□□□ 1.12
VIM-209ENST00000544301 PRAMEF22A3QJZ6 481 aa22.04■■□□□ 1.12
VIM-209ENST00000544301 KIF1BPQ96EK5 621 aa22.04■■□□□ 1.12
VIM-209ENST00000544301 MAP3K2Q9Y2U5 619 aa22.04■■□□□ 1.12
VIM-209ENST00000544301 ATF3P18847 181 aa22.03■■□□□ 1.12
VIM-209ENST00000544301 KSR2Q6VAB6 950 aa22.03■■□□□ 1.12
VIM-209ENST00000544301 CLEC17AQ6ZS10 378 aa22.03■■□□□ 1.12
VIM-209ENST00000544301 GOLGA6L3A6NEY3 463 aa22.02■■□□□ 1.12
VIM-209ENST00000544301 ALDH1L1O75891 902 aa22.02■■□□□ 1.12
VIM-209ENST00000544301 PTMSP20962 102 aa22.02■■□□□ 1.12
VIM-209ENST00000544301 HYPKQ9NX55 129 aa22.01■■□□□ 1.11
VIM-209ENST00000544301 TMEM94Q12767 1356 aa22.01■■□□□ 1.11
VIM-209ENST00000544301 MTX1Q13505 466 aa22.01■■□□□ 1.11
VIM-209ENST00000544301 PI4K2BQ8TCG2 481 aa22.01■■□□□ 1.11
VIM-209ENST00000544301 RAPGEF4Q8WZA2 1011 aa22.01■■□□□ 1.11
VIM-209ENST00000544301 DDX17Q92841 729 aaKnown RBP22.01■■□□□ 1.11
VIM-209ENST00000544301 HSP90AB4PQ58FF6 505 aa22■■□□□ 1.11
VIM-209ENST00000544301 CWC22Q9HCG8 908 aaKnown RBP22■■□□□ 1.11
VIM-209ENST00000544301 NLRP2Q9NX02 1062 aa22■■□□□ 1.11
VIM-209ENST00000544301 MCCP23508 829 aa22■■□□□ 1.11
VIM-209ENST00000544301 NUCB2P80303 420 aa22■■□□□ 1.11
VIM-209ENST00000544301 ANO2Q9NQ90 1003 aa22■■□□□ 1.11
VIM-209ENST00000544301 SKOR2Q2VWA4 1001 aaPredicted RBP21.99■■□□□ 1.11
VIM-209ENST00000544301 RTN4Q9NQC3 1192 aaKnown RBP21.99■■□□□ 1.11
VIM-209ENST00000544301 C9orf78Q9NZ63 289 aaPredicted RBP21.99■■□□□ 1.11
VIM-209ENST00000544301 CYP2E1P05181 493 aaPredicted RBP21.98■■□□□ 1.11
VIM-209ENST00000544301 DDX21Q9NR30 783 aaKnown RBP eCLIP21.98■■□□□ 1.11
VIM-209ENST00000544301 DCCP43146 1447 aa21.98■■□□□ 1.11
VIM-209ENST00000544301 NEK4P51957 841 aa21.98■■□□□ 1.11
VIM-209ENST00000544301 ANAPC15P60006 121 aa21.98■■□□□ 1.11
VIM-209ENST00000544301 PALD1Q9ULE6 856 aa21.98■■□□□ 1.11
VIM-209ENST00000544301 NPHP3Q7Z494 1330 aa21.97■■□□□ 1.11
VIM-209ENST00000544301 KDM6AO15550 1401 aaPredicted RBP21.97■■□□□ 1.11
VIM-209ENST00000544301 BAG4O95429 457 aaKnown RBP21.97■■□□□ 1.11
VIM-209ENST00000544301 TATP17735 454 aaPredicted RBP21.97■■□□□ 1.11
VIM-209ENST00000544301 PDIA6Q15084 440 aa21.97■■□□□ 1.11
VIM-209ENST00000544301 CWF19L2Q2TBE0 894 aaKnown RBP21.97■■□□□ 1.11
VIM-209ENST00000544301 SLC52A2Q9HAB3 445 aa21.97■■□□□ 1.11
VIM-209ENST00000544301 STRCP1A6NGW2 1772 aa21.97■■□□□ 1.11
VIM-209ENST00000544301 COL18A1P39060 1754 aa21.97■■□□□ 1.11
VIM-209ENST00000544301 XRCC6P12956 609 aaKnown RBP eCLIP21.97■■□□□ 1.11
VIM-209ENST00000544301 ZNF790Q6PG37 636 aa21.97■■□□□ 1.11
VIM-209ENST00000544301 ZGPATQ8N5A5 531 aaKnown RBP21.97■■□□□ 1.11
VIM-209ENST00000544301 IL17RAQ96F46 866 aa21.97■■□□□ 1.11
VIM-209ENST00000544301 AK9Q5TCS8 1911 aa21.96■■□□□ 1.11
VIM-209ENST00000544301 SCN11AQ9UI33 1791 aa21.96■■□□□ 1.11
VIM-209ENST00000544301 MAP4K4O95819 1239 aaPredicted RBP21.96■■□□□ 1.11
VIM-209ENST00000544301 PHKG2P15735 406 aa21.96■■□□□ 1.11
VIM-209ENST00000544301 IL25Q9H293 177 aa21.96■■□□□ 1.11
VIM-209ENST00000544301 USP42Q9H9J4 1324 aaKnown RBP21.96■■□□□ 1.11
VIM-209ENST00000544301 SLC39A6Q13433 755 aa21.95■■□□□ 1.11
VIM-209ENST00000544301 LINS1Q8NG48 757 aa21.95■■□□□ 1.11
VIM-209ENST00000544301 ARXQ96QS3 562 aa21.95■■□□□ 1.11
VIM-209ENST00000544301 SPG7Q9UQ90 795 aa21.95■■□□□ 1.11
VIM-209ENST00000544301 HDAC5Q9UQL6 1122 aa21.95■■□□□ 1.11
VIM-209ENST00000544301 GOLGA6L22H0YM25 854 aa21.95■■□□□ 1.1
VIM-209ENST00000544301 EPB41L2O43491 1005 aaKnown RBP21.95■■□□□ 1.1
VIM-209ENST00000544301 DDX58O95786 925 aaKnown RBP21.95■■□□□ 1.1
VIM-209ENST00000544301 OS9Q13438 667 aaPredicted RBP21.95■■□□□ 1.1
VIM-209ENST00000544301 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.95■■□□□ 1.1
VIM-209ENST00000544301 CRYBG1Q9Y4K1 1723 aa21.95■■□□□ 1.1
VIM-209ENST00000544301 MEGF6O75095 1541 aa21.95■■□□□ 1.1
VIM-209ENST00000544301 MCM2P49736 904 aa21.94■■□□□ 1.1
VIM-209ENST00000544301 AIMP1Q12904 312 aaKnown RBP21.94■■□□□ 1.1
VIM-209ENST00000544301 PKP1Q13835 747 aa21.94■■□□□ 1.1
VIM-209ENST00000544301 CABLES1Q8TDN4 633 aa21.94■■□□□ 1.1
VIM-209ENST00000544301 UTYO14607 1347 aa21.93■■□□□ 1.1
VIM-209ENST00000544301 ABCC6O95255 1503 aa21.93■■□□□ 1.1
VIM-209ENST00000544301 NFATC2IPQ8NCF5 419 aa21.93■■□□□ 1.1
VIM-209ENST00000544301 TMX3Q96JJ7 454 aa21.93■■□□□ 1.1
VIM-209ENST00000544301 GRM8O00222 908 aa21.92■■□□□ 1.1
VIM-209ENST00000544301 CNTROBQ8N137 903 aa21.92■■□□□ 1.1
VIM-209ENST00000544301 C5P01031 1676 aa21.92■■□□□ 1.1
VIM-209ENST00000544301 TTC41PQ6P2S7 1318 aa21.92■■□□□ 1.1
VIM-209ENST00000544301 TNS3Q68CZ2 1445 aa21.92■■□□□ 1.1
VIM-209ENST00000544301 CSB-PGBD3P0DP91 1061 aa21.92■■□□□ 1.1
VIM-209ENST00000544301 CADPS2Q86UW7 1296 aa21.91■■□□□ 1.1
VIM-209ENST00000544301 IFNL2Q8IZJ0 200 aa21.91■■□□□ 1.1
VIM-209ENST00000544301 CLASRPQ8N2M8 674 aaKnown RBP21.91■■□□□ 1.1
VIM-209ENST00000544301 SUCLG2Q96I99 432 aa21.91■■□□□ 1.1
VIM-209ENST00000544301 PA2G4Q9UQ80 394 aaKnown RBP21.91■■□□□ 1.1
VIM-209ENST00000544301 SGSM2O43147 1006 aa21.91■■□□□ 1.1
VIM-209ENST00000544301 HSPA4P34932 840 aa21.91■■□□□ 1.1
VIM-209ENST00000544301 KAZALD1Q96I82 304 aa21.91■■□□□ 1.1
VIM-209ENST00000544301 ISY1Q9ULR0 285 aaKnown RBP21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms