RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 CCDC144AA2RUR9 1427 aa10.52□□□□□ -0.73
VPS13D-212ENST00000543766 PRPF4BQ13523 1007 aaKnown RBP10.51□□□□□ -0.73
VPS13D-212ENST00000543766 BMS1Q14692 1282 aaKnown RBP10.51□□□□□ -0.73
VPS13D-212ENST00000543766 GNL3LQ9NVN8 582 aaKnown RBP10.51□□□□□ -0.73
VPS13D-212ENST00000543766 TMOD4Q9NZQ9 345 aa10.51□□□□□ -0.73
VPS13D-212ENST00000543766 RPRD2Q5VT52 1461 aaKnown RBP10.51□□□□□ -0.73
VPS13D-212ENST00000543766 FAM177BA6PVY3 158 aa10.51□□□□□ -0.73
VPS13D-212ENST00000543766 CCDC146Q8IYE0 955 aa10.51□□□□□ -0.73
VPS13D-212ENST00000543766 PHF8Q9UPP1 1060 aa10.51□□□□□ -0.73
VPS13D-212ENST00000543766 BRD4O60885 1362 aaPredicted RBP10.51□□□□□ -0.73
VPS13D-212ENST00000543766 ZNF394Q53GI3 561 aa10.51□□□□□ -0.73
VPS13D-212ENST00000543766 FMNL3Q8IVF7 1028 aa10.51□□□□□ -0.73
VPS13D-212ENST00000543766 CHMP5Q9NZZ3 219 aa10.51□□□□□ -0.73
VPS13D-212ENST00000543766 HDAC9Q9UKV0 1011 aa10.51□□□□□ -0.73
VPS13D-212ENST00000543766 TROQ12816 1431 aaPredicted RBP10.5□□□□□ -0.73
VPS13D-212ENST00000543766 CARMIL2Q6F5E8 1435 aa10.5□□□□□ -0.73
VPS13D-212ENST00000543766 SLC7A5Q01650 507 aa10.5□□□□□ -0.73
VPS13D-212ENST00000543766 WWC2Q6AWC2 1192 aa10.5□□□□□ -0.73
VPS13D-212ENST00000543766 NYAP1Q6ZVC0 841 aa10.5□□□□□ -0.73
VPS13D-212ENST00000543766 CLASRPQ8N2M8 674 aaKnown RBP10.5□□□□□ -0.73
VPS13D-212ENST00000543766 TRIM29Q14134 588 aa10.5□□□□□ -0.73
VPS13D-212ENST00000543766 DBN1Q16643 649 aa10.5□□□□□ -0.73
VPS13D-212ENST00000543766 MYSM1Q5VVJ2 828 aa10.5□□□□□ -0.73
VPS13D-212ENST00000543766 CLEC4GQ6UXB4 293 aa10.5□□□□□ -0.73
VPS13D-212ENST00000543766 CENPQQ7L2Z9 268 aaPredicted RBP10.5□□□□□ -0.73
VPS13D-212ENST00000543766 RSPH9Q9H1X1 276 aaPredicted RBP10.5□□□□□ -0.73
VPS13D-212ENST00000543766 ROCK2O75116 1388 aaKnown RBP10.5□□□□□ -0.73
VPS13D-212ENST00000543766 KCNA2P16389 499 aa10.5□□□□□ -0.73
VPS13D-212ENST00000543766 NOP2P46087 812 aaKnown RBP10.5□□□□□ -0.73
VPS13D-212ENST00000543766 BLMP54132 1417 aaPredicted RBP10.5□□□□□ -0.73
VPS13D-212ENST00000543766 SCAPERQ9BY12 1400 aa10.5□□□□□ -0.73
VPS13D-212ENST00000543766 AMOTL1Q8IY63 956 aa10.49□□□□□ -0.73
VPS13D-212ENST00000543766 RNF214Q8ND24 703 aa10.49□□□□□ -0.73
VPS13D-212ENST00000543766 COMMD10Q9Y6G5 202 aa10.49□□□□□ -0.73
VPS13D-212ENST00000543766 RICTORQ6R327 1708 aa10.49□□□□□ -0.73
VPS13D-212ENST00000543766 KIF14Q15058 1648 aa10.49□□□□□ -0.73
VPS13D-212ENST00000543766 U2AF2P26368 475 aaKnown RBP eCLIP10.49□□□□□ -0.73
VPS13D-212ENST00000543766 CCDC92Q53HC0 331 aaPredicted RBP10.49□□□□□ -0.73
VPS13D-212ENST00000543766 PAF1Q8N7H5 531 aa10.49□□□□□ -0.73
VPS13D-212ENST00000543766 IQCGQ9H095 443 aaKnown RBP10.49□□□□□ -0.73
VPS13D-212ENST00000543766 ADAMTSL3P82987 1691 aa10.49□□□□□ -0.73
VPS13D-212ENST00000543766 APLP1P51693 650 aa10.49□□□□□ -0.73
VPS13D-212ENST00000543766 LLGL2Q6P1M3 1020 aa10.49□□□□□ -0.73
VPS13D-212ENST00000543766 IRF2BPLQ9H1B7 796 aa10.49□□□□□ -0.73
VPS13D-212ENST00000543766 CEP126Q9P2H0 1117 aa10.49□□□□□ -0.73
VPS13D-212ENST00000543766 DAPK1P53355 1430 aa10.49□□□□□ -0.73
VPS13D-212ENST00000543766 MYCLP1P12525 358 aaPredicted RBP10.48□□□□□ -0.73
VPS13D-212ENST00000543766 IL4RP24394 825 aa10.48□□□□□ -0.73
VPS13D-212ENST00000543766 IFT88Q13099 833 aa10.48□□□□□ -0.73
VPS13D-212ENST00000543766 MAMSTRQ6ZN01 415 aa10.48□□□□□ -0.73
VPS13D-212ENST00000543766 IFNLR1Q8IU57 520 aaPredicted RBP10.48□□□□□ -0.73
VPS13D-212ENST00000543766 CRBNQ96SW2 442 aa10.48□□□□□ -0.73
VPS13D-212ENST00000543766 YIPF2Q9BWQ6 316 aa10.48□□□□□ -0.73
VPS13D-212ENST00000543766 DNAI2Q9GZS0 605 aa10.48□□□□□ -0.73
VPS13D-212ENST00000543766 ADGRL2O95490 1459 aa10.48□□□□□ -0.73
VPS13D-212ENST00000543766 CDC42BPAQ5VT25 1732 aa10.48□□□□□ -0.73
VPS13D-212ENST00000543766 SIGLEC1Q9BZZ2 1709 aa10.48□□□□□ -0.73
VPS13D-212ENST00000543766 PPFIA2O75334 1257 aa10.48□□□□□ -0.73
VPS13D-212ENST00000543766 ZSCAN30Q86W11 494 aa10.48□□□□□ -0.73
VPS13D-212ENST00000543766 CHCHD4Q8N4Q1 142 aa10.48□□□□□ -0.73
VPS13D-212ENST00000543766 FLCNQ8NFG4 579 aa10.48□□□□□ -0.73
VPS13D-212ENST00000543766 FAM117AQ9C073 453 aa10.48□□□□□ -0.73
VPS13D-212ENST00000543766 PAXBP1Q9Y5B6 917 aa10.48□□□□□ -0.73
VPS13D-212ENST00000543766 MYO1BO43795 1136 aa10.48□□□□□ -0.73
VPS13D-212ENST00000543766 WAPLQ7Z5K2 1190 aa10.48□□□□□ -0.73
VPS13D-212ENST00000543766 IQCF2Q8IXL9 164 aa10.48□□□□□ -0.73
VPS13D-212ENST00000543766 TMCO5AQ8N6Q1 288 aa10.48□□□□□ -0.73
VPS13D-212ENST00000543766 ENOX1Q8TC92 643 aaKnown RBP10.48□□□□□ -0.73
VPS13D-212ENST00000543766 ANKRD24Q8TF21 1146 aa10.48□□□□□ -0.73
VPS13D-212ENST00000543766 BICD1Q96G01 975 aa10.48□□□□□ -0.73
VPS13D-212ENST00000543766 ETAA1Q9NY74 926 aa10.48□□□□□ -0.73
VPS13D-212ENST00000543766 TDRD7Q8NHU6 1098 aaKnown RBP10.47□□□□□ -0.73
VPS13D-212ENST00000543766 GIMAP7Q8NHV1 300 aa10.47□□□□□ -0.73
VPS13D-212ENST00000543766 MKS1Q9NXB0 559 aa10.47□□□□□ -0.73
VPS13D-212ENST00000543766 CHMP3Q9Y3E7 222 aa10.47□□□□□ -0.73
VPS13D-212ENST00000543766 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.47□□□□□ -0.73
VPS13D-212ENST00000543766 PLEKHH2Q8IVE3 1493 aa10.47□□□□□ -0.73
VPS13D-212ENST00000543766 GTF2F1P35269 517 aaKnown RBP eCLIP10.47□□□□□ -0.73
VPS13D-212ENST00000543766 HS6ST3Q8IZP7 471 aa10.47□□□□□ -0.73
VPS13D-212ENST00000543766 MPP4Q96JB8 637 aa10.47□□□□□ -0.73
VPS13D-212ENST00000543766 TRMT1Q9NXH9 659 aaKnown RBP10.47□□□□□ -0.73
VPS13D-212ENST00000543766 PRR12Q9ULL5 1215 aa10.47□□□□□ -0.73
VPS13D-212ENST00000543766 NBPF8Q3BBV2 869 aa10.47□□□□□ -0.73
VPS13D-212ENST00000543766 HHATQ5VTY9 493 aa10.47□□□□□ -0.73
VPS13D-212ENST00000543766 VMP1Q96GC9 406 aa10.47□□□□□ -0.73
VPS13D-212ENST00000543766 UBA5Q9GZZ9 404 aa10.47□□□□□ -0.73
VPS13D-212ENST00000543766 HSP90AB1P08238 724 aaKnown RBP10.46□□□□□ -0.73
VPS13D-212ENST00000543766 RDXP35241 583 aaKnown RBP10.46□□□□□ -0.73
VPS13D-212ENST00000543766 VPS37AQ8NEZ2 397 aa10.46□□□□□ -0.73
VPS13D-212ENST00000543766 C17orf50Q8WW18 174 aa10.46□□□□□ -0.73
VPS13D-212ENST00000543766 U3KPZ7 1027 aaPredicted RBP10.46□□□□□ -0.73
VPS13D-212ENST00000543766 COPB2P35606 906 aa10.46□□□□□ -0.73
VPS13D-212ENST00000543766 SASS6Q6UVJ0 657 aa10.46□□□□□ -0.73
VPS13D-212ENST00000543766 GRPEL1Q9HAV7 217 aa10.46□□□□□ -0.73
VPS13D-212ENST00000543766 SHANK2Q9UPX8 1470 aa10.46□□□□□ -0.74
VPS13D-212ENST00000543766 RAD51AP2Q09MP3 1159 aa10.46□□□□□ -0.74
VPS13D-212ENST00000543766 PAGR1Q9BTK6 254 aa10.46□□□□□ -0.74
VPS13D-212ENST00000543766 NACA2Q9H009 215 aa10.46□□□□□ -0.74
VPS13D-212ENST00000543766 CAMSAP2Q08AD1 1489 aa10.45□□□□□ -0.74
VPS13D-212ENST00000543766 PLB1Q6P1J6 1458 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms