RNA–Protein interactions for RNA: ENST00000539941.6

COPS3-212, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2 BASIC

Gene COPS3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-212ENST00000539941 NECTIN2Q92692 538 aa21.3■■□□□ 1
COPS3-212ENST00000539941 DBF4Q9UBU7 674 aaPredicted RBP21.3■■□□□ 1
COPS3-212ENST00000539941 ONECUT3O60422 494 aaPredicted RBP21.29■■□□□ 1
COPS3-212ENST00000539941 FKBP5Q13451 457 aaPredicted RBP21.29■■□□□ 1
COPS3-212ENST00000539941 TNS2Q63HR2 1409 aa21.29■■□□□ 1
COPS3-212ENST00000539941 GLI3P10071 1580 aa21.29■■□□□ 1
COPS3-212ENST00000539941 PAPPAQ13219 1627 aa21.29■■□□□ 1
COPS3-212ENST00000539941 SLC39A6Q13433 755 aa21.28■■□□□ 1
COPS3-212ENST00000539941 FMNL2Q96PY5 1086 aa21.28■■□□□ 1
COPS3-212ENST00000539941 SPATA31A5Q5VU36 1347 aa21.28■■□□□ 1
COPS3-212ENST00000539941 SPATA31A7Q8IWB4 1347 aa21.28■■□□□ 1
COPS3-212ENST00000539941 CHPF2Q9P2E5 772 aa21.28■■□□□ 1
COPS3-212ENST00000539941 UBR2Q8IWV8 1755 aa21.27■■□□□ 1
COPS3-212ENST00000539941 EXOC5O00471 708 aa21.27■■□□□ 1
COPS3-212ENST00000539941 SNRPA1P09661 255 aaKnown RBP21.27■■□□□ 1
COPS3-212ENST00000539941 TOGARAM1Q9Y4F4 1720 aa21.27■■□□□ 1
COPS3-212ENST00000539941 C5P01031 1676 aa21.26■□□□□ 0.99
COPS3-212ENST00000539941 ZNF496Q96IT1 587 aaPredicted RBP21.26■□□□□ 0.99
COPS3-212ENST00000539941 BARGINQ6ZT62 677 aa21.25■□□□□ 0.99
COPS3-212ENST00000539941 HYPKQ9NX55 129 aa21.25■□□□□ 0.99
COPS3-212ENST00000539941 SEPT12Q8IYM1 358 aa21.24■□□□□ 0.99
COPS3-212ENST00000539941 CCDC9Q9Y3X0 531 aaKnown RBP21.24■□□□□ 0.99
COPS3-212ENST00000539941 LAMB4A4D0S4 1761 aa21.24■□□□□ 0.99
COPS3-212ENST00000539941 DDX21Q9NR30 783 aaKnown RBP eCLIP21.24■□□□□ 0.99
COPS3-212ENST00000539941 EP400Q96L91 3159 aa21.23■□□□□ 0.99
COPS3-212ENST00000539941 F6X3S4 739 aa21.23■□□□□ 0.99
COPS3-212ENST00000539941 PHAXQ9H814 394 aaKnown RBP21.23■□□□□ 0.99
COPS3-212ENST00000539941 SLC4A10Q6U841 1118 aa21.22■□□□□ 0.99
COPS3-212ENST00000539941 TMOD3Q9NYL9 352 aa21.22■□□□□ 0.99
COPS3-212ENST00000539941 PRAMEF22A3QJZ6 481 aa21.21■□□□□ 0.99
COPS3-212ENST00000539941 KCPQ6ZWJ8 1503 aa21.21■□□□□ 0.99
COPS3-212ENST00000539941 DDB1Q16531 1140 aa21.2■□□□□ 0.98
COPS3-212ENST00000539941 SMC5Q8IY18 1101 aa21.2■□□□□ 0.98
COPS3-212ENST00000539941 ERBB4Q15303 1308 aa21.2■□□□□ 0.98
COPS3-212ENST00000539941 ITGB4P16144 1822 aa21.2■□□□□ 0.98
COPS3-212ENST00000539941 ATP10DQ9P241 1426 aa21.19■□□□□ 0.98
COPS3-212ENST00000539941 PDIA6Q15084 440 aa21.18■□□□□ 0.98
COPS3-212ENST00000539941 DNAAF4Q8WXU2 420 aa21.18■□□□□ 0.98
COPS3-212ENST00000539941 DDX58O95786 925 aaKnown RBP21.18■□□□□ 0.98
COPS3-212ENST00000539941 GNAI3P08754 354 aa21.18■□□□□ 0.98
COPS3-212ENST00000539941 FAM98CQ17RN3 349 aaKnown RBP21.18■□□□□ 0.98
COPS3-212ENST00000539941 RPAP2Q8IXW5 612 aaPredicted RBP21.18■□□□□ 0.98
COPS3-212ENST00000539941 MEIS3Q99687 375 aa21.18■□□□□ 0.98
COPS3-212ENST00000539941 PROSER3Q2NL68 480 aa21.17■□□□□ 0.98
COPS3-212ENST00000539941 C1orf115Q9H7X2 142 aa21.17■□□□□ 0.98
COPS3-212ENST00000539941 ADCY9O60503 1353 aa21.17■□□□□ 0.98
COPS3-212ENST00000539941 PI4KAP2A4QPH2 592 aa21.16■□□□□ 0.98
COPS3-212ENST00000539941 ANXA1P04083 346 aa21.16■□□□□ 0.98
COPS3-212ENST00000539941 KSR2Q6VAB6 950 aa21.16■□□□□ 0.98
COPS3-212ENST00000539941 PI4KAP1Q8N8J0 262 aa21.16■□□□□ 0.98
COPS3-212ENST00000539941 GCC1Q96CN9 775 aa21.16■□□□□ 0.98
COPS3-212ENST00000539941 SRCIN1Q9C0H9 1055 aa21.16■□□□□ 0.98
COPS3-212ENST00000539941 USP16Q9Y5T5 823 aa21.16■□□□□ 0.98
COPS3-212ENST00000539941 BCL9O00512 1426 aa21.16■□□□□ 0.98
COPS3-212ENST00000539941 CCDC125Q86Z20 511 aa21.15■□□□□ 0.98
COPS3-212ENST00000539941 ANKRD44Q8N8A2 993 aa21.15■□□□□ 0.98
COPS3-212ENST00000539941 PIGBQ92521 554 aa21.15■□□□□ 0.98
COPS3-212ENST00000539941 KRT27Q7Z3Y8 459 aa21.15■□□□□ 0.98
COPS3-212ENST00000539941 VSIG10Q8N0Z9 540 aa21.15■□□□□ 0.98
COPS3-212ENST00000539941 PDZRN3Q9UPQ7 1066 aa21.15■□□□□ 0.98
COPS3-212ENST00000539941 IBTKQ9P2D0 1353 aaPredicted RBP21.14■□□□□ 0.97
COPS3-212ENST00000539941 BRWD3Q6RI45 1802 aa21.14■□□□□ 0.97
COPS3-212ENST00000539941 BEND3Q5T5X7 828 aa21.14■□□□□ 0.97
COPS3-212ENST00000539941 GNAI2P04899 355 aa21.13■□□□□ 0.97
COPS3-212ENST00000539941 SIRT2Q8IXJ6 389 aa21.13■□□□□ 0.97
COPS3-212ENST00000539941 TEX13AQ9BXU3 409 aaPredicted RBP21.13■□□□□ 0.97
COPS3-212ENST00000539941 DOT1LQ8TEK3 1739 aa21.13■□□□□ 0.97
COPS3-212ENST00000539941 ALDH1L1O75891 902 aa21.12■□□□□ 0.97
COPS3-212ENST00000539941 CEP85Q6P2H3 762 aa21.12■□□□□ 0.97
COPS3-212ENST00000539941 LRP10Q7Z4F1 713 aa21.12■□□□□ 0.97
COPS3-212ENST00000539941 SKAP1Q86WV1 359 aa21.12■□□□□ 0.97
COPS3-212ENST00000539941 MAP3K2Q9Y2U5 619 aa21.12■□□□□ 0.97
COPS3-212ENST00000539941 RGS3P49796 1198 aa21.11■□□□□ 0.97
COPS3-212ENST00000539941 ATG3Q9NT62 314 aa21.11■□□□□ 0.97
COPS3-212ENST00000539941 PTCD1O75127 700 aaKnown RBP21.1■□□□□ 0.97
COPS3-212ENST00000539941 HMMRO75330 724 aa21.1■□□□□ 0.97
COPS3-212ENST00000539941 USP44Q9H0E7 712 aa21.1■□□□□ 0.97
COPS3-212ENST00000539941 A0A0G2JS52 829 aa21.09■□□□□ 0.97
COPS3-212ENST00000539941 MYL6BP14649 208 aa21.09■□□□□ 0.97
COPS3-212ENST00000539941 NUCB1Q02818 461 aa21.09■□□□□ 0.97
COPS3-212ENST00000539941 MARCH10Q8NA82 808 aaPredicted RBP21.09■□□□□ 0.97
COPS3-212ENST00000539941 XAGE3Q8WTP9 111 aa21.09■□□□□ 0.97
COPS3-212ENST00000539941 ASAP1Q9ULH1 1129 aa21.09■□□□□ 0.97
COPS3-212ENST00000539941 UBTFL1P0CB47 393 aaPredicted RBP21.09■□□□□ 0.97
COPS3-212ENST00000539941 LINS1Q8NG48 757 aa21.09■□□□□ 0.97
COPS3-212ENST00000539941 COPS6Q7L5N1 327 aa21.08■□□□□ 0.96
COPS3-212ENST00000539941 DCTPP1Q9H773 170 aa21.08■□□□□ 0.96
COPS3-212ENST00000539941 HDAC5Q9UQL6 1122 aa21.08■□□□□ 0.96
COPS3-212ENST00000539941 AIMP1Q12904 312 aaKnown RBP21.07■□□□□ 0.96
COPS3-212ENST00000539941 RIC3Q7Z5B4 369 aa21.07■□□□□ 0.96
COPS3-212ENST00000539941 THSD7AQ9UPZ6 1657 aa21.07■□□□□ 0.96
COPS3-212ENST00000539941 PRIM1P49642 420 aaKnown RBP21.06■□□□□ 0.96
COPS3-212ENST00000539941 FAM182BQ5T319 152 aa21.06■□□□□ 0.96
COPS3-212ENST00000539941 NOP58Q9Y2X3 529 aaKnown RBP21.06■□□□□ 0.96
COPS3-212ENST00000539941 NBPF26B4DH59 902 aa21.05■□□□□ 0.96
COPS3-212ENST00000539941 NEXNQ0ZGT2 675 aa21.05■□□□□ 0.96
COPS3-212ENST00000539941 NBPF14Q5TI25 921 aa21.05■□□□□ 0.96
COPS3-212ENST00000539941 NBPF10Q6P3W6 841 aaKnown RBP21.05■□□□□ 0.96
COPS3-212ENST00000539941 ANKRD13DQ6ZTN6 518 aa21.05■□□□□ 0.96
COPS3-212ENST00000539941 NBPF15Q8N660 670 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms