RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 GOLGB1Q14789 3259 aaKnown RBP19.59■□□□□ 0.73
USP28-204ENST00000537642 COL15A1P39059 1388 aa19.58■□□□□ 0.73
USP28-204ENST00000537642 CANXP27824 592 aaKnown RBP19.58■□□□□ 0.72
USP28-204ENST00000537642 FKBP8Q14318 412 aa19.58■□□□□ 0.72
USP28-204ENST00000537642 TAF7Q15545 349 aaPredicted RBP19.58■□□□□ 0.72
USP28-204ENST00000537642 GPR162Q16538 588 aa19.58■□□□□ 0.72
USP28-204ENST00000537642 TEX13AQ9BXU3 409 aaPredicted RBP19.58■□□□□ 0.72
USP28-204ENST00000537642 KIF13BQ9NQT8 1826 aa19.57■□□□□ 0.72
USP28-204ENST00000537642 ZNF316A6NFI3 1004 aaPredicted RBP19.56■□□□□ 0.72
USP28-204ENST00000537642 PELP1Q8IZL8 1130 aaKnown RBP19.56■□□□□ 0.72
USP28-204ENST00000537642 THUMPD2Q9BTF0 503 aaKnown RBP19.56■□□□□ 0.72
USP28-204ENST00000537642 CHD4Q14839 1912 aa19.56■□□□□ 0.72
USP28-204ENST00000537642 ZPR1O75312 459 aa19.55■□□□□ 0.72
USP28-204ENST00000537642 YY1P25490 414 aa19.55■□□□□ 0.72
USP28-204ENST00000537642 EIF5P55010 431 aaKnown RBP19.55■□□□□ 0.72
USP28-204ENST00000537642 USPL1Q5W0Q7 1092 aa19.55■□□□□ 0.72
USP28-204ENST00000537642 MIS18AQ9NYP9 233 aa19.55■□□□□ 0.72
USP28-204ENST00000537642 NARFQ9UHQ1 456 aa19.55■□□□□ 0.72
USP28-204ENST00000537642 PARP3Q9Y6F1 533 aa19.55■□□□□ 0.72
USP28-204ENST00000537642 KDM3BQ7LBC6 1761 aa19.55■□□□□ 0.72
USP28-204ENST00000537642 PRAMEF22A3QJZ6 481 aa19.54■□□□□ 0.72
USP28-204ENST00000537642 A1BGP04217 495 aa19.54■□□□□ 0.72
USP28-204ENST00000537642 YBX3P16989 372 aaKnown RBP eCLIP19.54■□□□□ 0.72
USP28-204ENST00000537642 WDR43Q15061 677 aaKnown RBP eCLIP19.54■□□□□ 0.72
USP28-204ENST00000537642 USP16Q9Y5T5 823 aa19.54■□□□□ 0.72
USP28-204ENST00000537642 C10orf71Q711Q0 1435 aa19.53■□□□□ 0.72
USP28-204ENST00000537642 SNRPA1P09661 255 aaKnown RBP19.53■□□□□ 0.72
USP28-204ENST00000537642 TMPOP42166 694 aaKnown RBP19.53■□□□□ 0.72
USP28-204ENST00000537642 RIPK4P57078 832 aa19.53■□□□□ 0.72
USP28-204ENST00000537642 DDR1Q08345 913 aa19.53■□□□□ 0.72
USP28-204ENST00000537642 CCDC146Q8IYE0 955 aa19.53■□□□□ 0.72
USP28-204ENST00000537642 BCL2L12Q9HB09 334 aa19.53■□□□□ 0.72
USP28-204ENST00000537642 KIAA1551Q9HCM1 1747 aa19.53■□□□□ 0.72
USP28-204ENST00000537642 TM4SF1P30408 202 aa19.52■□□□□ 0.72
USP28-204ENST00000537642 PNISRQ8TF01 805 aaKnown RBP19.52■□□□□ 0.72
USP28-204ENST00000537642 ADAMTS8Q9UP79 889 aa19.52■□□□□ 0.72
USP28-204ENST00000537642 IL6STP40189 918 aaPredicted RBP19.51■□□□□ 0.71
USP28-204ENST00000537642 N4BP2Q86UW6 1770 aaPredicted RBP19.5■□□□□ 0.71
USP28-204ENST00000537642 PXDNLA1KZ92 1463 aa19.5■□□□□ 0.71
USP28-204ENST00000537642 A0A087WZG4 1122 aa19.5■□□□□ 0.71
USP28-204ENST00000537642 POLRMTO00411 1230 aaKnown RBP19.5■□□□□ 0.71
USP28-204ENST00000537642 RUNDC1Q96C34 613 aa19.5■□□□□ 0.71
USP28-204ENST00000537642 RRP7AQ9Y3A4 280 aaKnown RBP19.5■□□□□ 0.71
USP28-204ENST00000537642 ZNF330Q9Y3S2 320 aaPredicted RBP19.5■□□□□ 0.71
USP28-204ENST00000537642 AFDNP55196 1824 aaKnown RBP19.49■□□□□ 0.71
USP28-204ENST00000537642 PIP4K2AP48426 406 aaPredicted RBP19.49■□□□□ 0.71
USP28-204ENST00000537642 NFIXQ14938 502 aa19.49■□□□□ 0.71
USP28-204ENST00000537642 SCN7AQ01118 1682 aa19.49■□□□□ 0.71
USP28-204ENST00000537642 LAMB4A4D0S4 1761 aa19.48■□□□□ 0.71
USP28-204ENST00000537642 GRIN3BO60391 1043 aa19.48■□□□□ 0.71
USP28-204ENST00000537642 TGFB2P61812 414 aa19.48■□□□□ 0.71
USP28-204ENST00000537642 WWC3Q9ULE0 1092 aa19.48■□□□□ 0.71
USP28-204ENST00000537642 TBC1D2BQ9UPU7 963 aa19.48■□□□□ 0.71
USP28-204ENST00000537642 EIF4A1P60842 406 aaKnown RBP19.47■□□□□ 0.71
USP28-204ENST00000537642 LMOD3Q0VAK6 560 aa19.47■□□□□ 0.71
USP28-204ENST00000537642 NRXN2Q9P2S2 1712 aa19.46■□□□□ 0.71
USP28-204ENST00000537642 A0A0G2JLW4 131 aa19.46■□□□□ 0.71
USP28-204ENST00000537642 NEUROD2Q15784 382 aa19.46■□□□□ 0.71
USP28-204ENST00000537642 BCORQ6W2J9 1755 aa19.45■□□□□ 0.7
USP28-204ENST00000537642 NBPF26B4DH59 902 aa19.45■□□□□ 0.7
USP28-204ENST00000537642 GIGYF1O75420 1035 aaPredicted RBP19.45■□□□□ 0.7
USP28-204ENST00000537642 DPEP1P16444 411 aa19.45■□□□□ 0.7
USP28-204ENST00000537642 CCDC184Q52MB2 194 aa19.45■□□□□ 0.7
USP28-204ENST00000537642 NBPF10Q6P3W6 841 aaKnown RBP19.45■□□□□ 0.7
USP28-204ENST00000537642 NBPF15Q8N660 670 aa19.45■□□□□ 0.7
USP28-204ENST00000537642 TSPYL4Q9UJ04 414 aa19.45■□□□□ 0.7
USP28-204ENST00000537642 TRIM35Q9UPQ4 493 aa19.45■□□□□ 0.7
USP28-204ENST00000537642 BRCA1P38398 1863 aaKnown RBP19.45■□□□□ 0.7
USP28-204ENST00000537642 CAMTA2O94983 1202 aa19.44■□□□□ 0.7
USP28-204ENST00000537642 TBC1D9BQ66K14 1250 aa19.44■□□□□ 0.7
USP28-204ENST00000537642 NPM2Q86SE8 214 aaKnown RBP19.44■□□□□ 0.7
USP28-204ENST00000537642 SERPINB2P05120 415 aa19.43■□□□□ 0.7
USP28-204ENST00000537642 BICDL1Q6ZP65 573 aa19.43■□□□□ 0.7
USP28-204ENST00000537642 DZIP3Q86Y13 1208 aaKnown RBP19.43■□□□□ 0.7
USP28-204ENST00000537642 KCNA3P22001 575 aa19.42■□□□□ 0.7
USP28-204ENST00000537642 BABAM1Q9NWV8 329 aa19.42■□□□□ 0.7
USP28-204ENST00000537642 APAF1O14727 1248 aa19.39■□□□□ 0.69
USP28-204ENST00000537642 BCS1LQ9Y276 419 aa19.39■□□□□ 0.69
USP28-204ENST00000537642 CHL1O00533 1208 aa19.38■□□□□ 0.69
USP28-204ENST00000537642 ANP32CO43423 234 aa19.38■□□□□ 0.69
USP28-204ENST00000537642 CHRNA5P30532 468 aa19.38■□□□□ 0.69
USP28-204ENST00000537642 ZNF784Q8NCA9 323 aaPredicted RBP19.38■□□□□ 0.69
USP28-204ENST00000537642 CARMIL3Q8ND23 1372 aa19.38■□□□□ 0.69
USP28-204ENST00000537642 CLEC4GQ6UXB4 293 aa19.37■□□□□ 0.69
USP28-204ENST00000537642 PIM2Q9P1W9 311 aa19.37■□□□□ 0.69
USP28-204ENST00000537642 ANKRD31Q8N7Z5 1873 aa19.37■□□□□ 0.69
USP28-204ENST00000537642 ARFGEF1Q9Y6D6 1849 aa19.37■□□□□ 0.69
USP28-204ENST00000537642 SETDB2Q96T68 719 aa19.36■□□□□ 0.69
USP28-204ENST00000537642 LAS1LQ9Y4W2 734 aaKnown RBP19.36■□□□□ 0.69
USP28-204ENST00000537642 DLEC1Q9Y238 1755 aa19.35■□□□□ 0.69
USP28-204ENST00000537642 RGL2O15211 777 aa19.35■□□□□ 0.69
USP28-204ENST00000537642 PRR5LQ6MZQ0 368 aa19.35■□□□□ 0.69
USP28-204ENST00000537642 NGEFQ8N5V2 710 aa19.35■□□□□ 0.69
USP28-204ENST00000537642 ZNF652Q9Y2D9 606 aa19.35■□□□□ 0.69
USP28-204ENST00000537642 ERBB4Q15303 1308 aa19.34■□□□□ 0.69
USP28-204ENST00000537642 MYL6BP14649 208 aa19.34■□□□□ 0.69
USP28-204ENST00000537642 HLFQ16534 295 aa19.34■□□□□ 0.69
USP28-204ENST00000537642 KRT24Q2M2I5 525 aa19.34■□□□□ 0.69
USP28-204ENST00000537642 CCDC24Q8N4L8 307 aa19.34■□□□□ 0.69
USP28-204ENST00000537642 NUP98P52948 1817 aa19.33■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms