RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 TSPYL4Q9UJ04 414 aa29.79■■■□□ 2.36
SFSWAP-204ENST00000535399 PRAMEF22A3QJZ6 481 aa29.78■■■□□ 2.36
SFSWAP-204ENST00000535399 SNRPA1P09661 255 aaKnown RBP29.78■■■□□ 2.36
SFSWAP-204ENST00000535399 EIF4A1P60842 406 aaKnown RBP29.78■■■□□ 2.36
SFSWAP-204ENST00000535399 FAM9BQ8IZU0 186 aa29.78■■■□□ 2.36
SFSWAP-204ENST00000535399 ARHGEF1Q92888 912 aaKnown RBP29.78■■■□□ 2.36
SFSWAP-204ENST00000535399 ZBTB1Q9Y2K1 713 aa29.78■■■□□ 2.36
SFSWAP-204ENST00000535399 SOS1Q07889 1333 aaPredicted RBP29.77■■■□□ 2.36
SFSWAP-204ENST00000535399 USP16Q9Y5T5 823 aa29.77■■■□□ 2.36
SFSWAP-204ENST00000535399 CCER2I3L3R5 266 aa29.76■■■□□ 2.35
SFSWAP-204ENST00000535399 KDM3BQ7LBC6 1761 aa29.75■■■□□ 2.35
SFSWAP-204ENST00000535399 CHL1O00533 1208 aa29.75■■■□□ 2.35
SFSWAP-204ENST00000535399 MSL1Q68DK7 614 aa29.75■■■□□ 2.35
SFSWAP-204ENST00000535399 SENP3-EIF4A1A0A087X0R7 540 aa29.74■■■□□ 2.35
SFSWAP-204ENST00000535399 GIGYF1O75420 1035 aaPredicted RBP29.73■■■□□ 2.35
SFSWAP-204ENST00000535399 A1BGP04217 495 aa29.72■■■□□ 2.35
SFSWAP-204ENST00000535399 CANXP27824 592 aaKnown RBP29.72■■■□□ 2.35
SFSWAP-204ENST00000535399 RFC4P35249 363 aa29.71■■■□□ 2.35
SFSWAP-204ENST00000535399 CCDC27Q2M243 656 aa29.71■■■□□ 2.35
SFSWAP-204ENST00000535399 NCBP3Q53F19 620 aaKnown RBP29.71■■■□□ 2.35
SFSWAP-204ENST00000535399 LAS1LQ9Y4W2 734 aaKnown RBP29.71■■■□□ 2.35
SFSWAP-204ENST00000535399 EIF5P55010 431 aaKnown RBP29.7■■■□□ 2.35
SFSWAP-204ENST00000535399 CFAP44Q96MT7 982 aa29.7■■■□□ 2.35
SFSWAP-204ENST00000535399 PPP1R1BQ9UD71 204 aaPredicted RBP29.7■■■□□ 2.35
SFSWAP-204ENST00000535399 COL24A1Q17RW2 1714 aa29.69■■■□□ 2.34
SFSWAP-204ENST00000535399 ZNF853P0CG23 659 aa29.69■■■□□ 2.34
SFSWAP-204ENST00000535399 POLD1P28340 1107 aa29.69■■■□□ 2.34
SFSWAP-204ENST00000535399 COL15A1P39059 1388 aa29.68■■■□□ 2.34
SFSWAP-204ENST00000535399 CALD1Q05682 793 aaKnown RBP29.68■■■□□ 2.34
SFSWAP-204ENST00000535399 ARXQ96QS3 562 aa29.68■■■□□ 2.34
SFSWAP-204ENST00000535399 SRP68Q9UHB9 627 aaKnown RBP29.68■■■□□ 2.34
SFSWAP-204ENST00000535399 GYS1P13807 737 aa29.67■■■□□ 2.34
SFSWAP-204ENST00000535399 WWC1Q8IX03 1113 aa29.67■■■□□ 2.34
SFSWAP-204ENST00000535399 MIER1Q8N108 512 aa29.67■■■□□ 2.34
SFSWAP-204ENST00000535399 USP42Q9H9J4 1324 aaKnown RBP29.67■■■□□ 2.34
SFSWAP-204ENST00000535399 IL6STP40189 918 aaPredicted RBP29.66■■■□□ 2.34
SFSWAP-204ENST00000535399 IFT57Q9NWB7 429 aa29.66■■■□□ 2.34
SFSWAP-204ENST00000535399 PIP4K2AP48426 406 aaPredicted RBP29.64■■■□□ 2.34
SFSWAP-204ENST00000535399 MBIPQ9NS73 344 aa29.64■■■□□ 2.34
SFSWAP-204ENST00000535399 NBPF26B4DH59 902 aa29.63■■■□□ 2.33
SFSWAP-204ENST00000535399 NBPF10Q6P3W6 841 aaKnown RBP29.63■■■□□ 2.33
SFSWAP-204ENST00000535399 NLGN1Q8N2Q7 840 aa29.63■■■□□ 2.33
SFSWAP-204ENST00000535399 NBPF15Q8N660 670 aa29.63■■■□□ 2.33
SFSWAP-204ENST00000535399 NARFQ9UHQ1 456 aa29.63■■■□□ 2.33
SFSWAP-204ENST00000535399 C4AP0C0L4 1744 aa29.62■■■□□ 2.33
SFSWAP-204ENST00000535399 GNAI1P63096 354 aa29.62■■■□□ 2.33
SFSWAP-204ENST00000535399 KRT24Q2M2I5 525 aa29.62■■■□□ 2.33
SFSWAP-204ENST00000535399 A0A087WZG4 1122 aa29.61■■■□□ 2.33
SFSWAP-204ENST00000535399 USPL1Q5W0Q7 1092 aa29.61■■■□□ 2.33
SFSWAP-204ENST00000535399 SALL2Q9Y467 1007 aaPredicted RBP29.61■■■□□ 2.33
SFSWAP-204ENST00000535399 ZPR1O75312 459 aa29.6■■■□□ 2.33
SFSWAP-204ENST00000535399 FKBP8Q14318 412 aa29.6■■■□□ 2.33
SFSWAP-204ENST00000535399 ZNF330Q9Y3S2 320 aaPredicted RBP29.6■■■□□ 2.33
SFSWAP-204ENST00000535399 MMP10P09238 476 aa29.59■■■□□ 2.33
SFSWAP-204ENST00000535399 FHDC1Q9C0D6 1143 aaPredicted RBP29.59■■■□□ 2.33
SFSWAP-204ENST00000535399 NGEFQ8N5V2 710 aa29.58■■■□□ 2.33
SFSWAP-204ENST00000535399 BCL2L12Q9HB09 334 aa29.58■■■□□ 2.33
SFSWAP-204ENST00000535399 IL16Q14005 1332 aa29.57■■■□□ 2.32
SFSWAP-204ENST00000535399 TBC1D2BQ9UPU7 963 aa29.57■■■□□ 2.32
SFSWAP-204ENST00000535399 LAMB4A4D0S4 1761 aa29.57■■■□□ 2.32
SFSWAP-204ENST00000535399 ERBB4Q15303 1308 aa29.55■■■□□ 2.32
SFSWAP-204ENST00000535399 EIF2S2P20042 333 aaKnown RBP29.55■■■□□ 2.32
SFSWAP-204ENST00000535399 WDR63Q8IWG1 891 aa29.55■■■□□ 2.32
SFSWAP-204ENST00000535399 NPM2Q86SE8 214 aaKnown RBP29.54■■■□□ 2.32
SFSWAP-204ENST00000535399 SYT17Q9BSW7 474 aa29.54■■■□□ 2.32
SFSWAP-204ENST00000535399 CAMTA2O94983 1202 aa29.53■■■□□ 2.32
SFSWAP-204ENST00000535399 HOXB7P09629 217 aa29.53■■■□□ 2.32
SFSWAP-204ENST00000535399 DZIP3Q86Y13 1208 aaKnown RBP29.53■■■□□ 2.32
SFSWAP-204ENST00000535399 TM4SF1P30408 202 aa29.52■■■□□ 2.32
SFSWAP-204ENST00000535399 DUSP27Q5VZP5 1158 aa29.52■■■□□ 2.32
SFSWAP-204ENST00000535399 TSR2Q969E8 191 aaKnown RBP29.52■■■□□ 2.32
SFSWAP-204ENST00000535399 DDR1Q08345 913 aa29.51■■■□□ 2.31
SFSWAP-204ENST00000535399 PDIA6Q15084 440 aa29.51■■■□□ 2.31
SFSWAP-204ENST00000535399 LRP10Q7Z4F1 713 aa29.5■■■□□ 2.31
SFSWAP-204ENST00000535399 ZNF521Q96K83 1311 aa29.49■■■□□ 2.31
SFSWAP-204ENST00000535399 MYL6BP14649 208 aa29.49■■■□□ 2.31
SFSWAP-204ENST00000535399 NFIXQ14938 502 aa29.49■■■□□ 2.31
SFSWAP-204ENST00000535399 KLHL34Q8N239 644 aa29.49■■■□□ 2.31
SFSWAP-204ENST00000535399 C8orf58Q8NAV2 365 aa29.49■■■□□ 2.31
SFSWAP-204ENST00000535399 NECTIN2Q92692 538 aa29.49■■■□□ 2.31
SFSWAP-204ENST00000535399 PARP3Q9Y6F1 533 aa29.49■■■□□ 2.31
SFSWAP-204ENST00000535399 PROSER3Q2NL68 480 aa29.48■■■□□ 2.31
SFSWAP-204ENST00000535399 POLRMTO00411 1230 aaKnown RBP29.47■■■□□ 2.31
SFSWAP-204ENST00000535399 HDGFL1Q5TGJ6 251 aa29.47■■■□□ 2.31
SFSWAP-204ENST00000535399 CD2APQ9Y5K6 639 aa29.47■■■□□ 2.31
SFSWAP-204ENST00000535399 ANXA1P04083 346 aa29.46■■■□□ 2.31
SFSWAP-204ENST00000535399 SPINK5Q9NQ38 1064 aaPredicted RBP29.46■■■□□ 2.31
SFSWAP-204ENST00000535399 SCN7AQ01118 1682 aa29.45■■■□□ 2.31
SFSWAP-204ENST00000535399 ELL2O00472 640 aaPredicted RBP29.45■■■□□ 2.31
SFSWAP-204ENST00000535399 TBC1D9BQ66K14 1250 aa29.45■■■□□ 2.31
SFSWAP-204ENST00000535399 TTLL7Q6ZT98 887 aa29.45■■■□□ 2.31
SFSWAP-204ENST00000535399 TSPYL6Q8N831 410 aa29.45■■■□□ 2.31
SFSWAP-204ENST00000535399 NLGN2Q8NFZ4 835 aa29.45■■■□□ 2.31
SFSWAP-204ENST00000535399 FANCIQ9NVI1 1328 aa29.45■■■□□ 2.3
SFSWAP-204ENST00000535399 RGL2O15211 777 aa29.44■■■□□ 2.3
SFSWAP-204ENST00000535399 DDX21Q9NR30 783 aaKnown RBP eCLIP29.44■■■□□ 2.3
SFSWAP-204ENST00000535399 CLEC4GQ6UXB4 293 aa29.43■■■□□ 2.3
SFSWAP-204ENST00000535399 CHPF2Q9P2E5 772 aa29.43■■■□□ 2.3
SFSWAP-204ENST00000535399 BICDL1Q6ZP65 573 aa29.42■■■□□ 2.3
SFSWAP-204ENST00000535399 HLFQ16534 295 aa29.41■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 221.3 ms