RNA–Protein interactions for RNA: ENST00000534401.5

PKP3-211, Transcript of plakophilin 3, humanhuman

TSL 3

Gene PKP3, Length 756 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP3-211ENST00000534401 SYT17Q9BSW7 474 aa28.15■■■□□ 2.1
PKP3-211ENST00000534401 FHDC1Q9C0D6 1143 aaPredicted RBP28.15■■■□□ 2.1
PKP3-211ENST00000534401 LMOD3Q0VAK6 560 aa28.14■■■□□ 2.1
PKP3-211ENST00000534401 TRIM35Q9UPQ4 493 aa28.14■■■□□ 2.1
PKP3-211ENST00000534401 ZBTB1Q9Y2K1 713 aa28.14■■■□□ 2.1
PKP3-211ENST00000534401 BABAM1Q9NWV8 329 aa28.13■■■□□ 2.09
PKP3-211ENST00000534401 GYS1P13807 737 aa28.12■■■□□ 2.09
PKP3-211ENST00000534401 SNRPA1P09661 255 aaKnown RBP28.11■■■□□ 2.09
PKP3-211ENST00000534401 RFC4P35249 363 aa28.11■■■□□ 2.09
PKP3-211ENST00000534401 EIF5P55010 431 aaKnown RBP28.11■■■□□ 2.09
PKP3-211ENST00000534401 NLGN1Q8N2Q7 840 aa28.11■■■□□ 2.09
PKP3-211ENST00000534401 MIS18AQ9NYP9 233 aa28.11■■■□□ 2.09
PKP3-211ENST00000534401 USP42Q9H9J4 1324 aaKnown RBP28.11■■■□□ 2.09
PKP3-211ENST00000534401 RRP7AQ9Y3A4 280 aaKnown RBP28.1■■■□□ 2.09
PKP3-211ENST00000534401 USP16Q9Y5T5 823 aa28.1■■■□□ 2.09
PKP3-211ENST00000534401 EIF4A1P60842 406 aaKnown RBP28.09■■■□□ 2.09
PKP3-211ENST00000534401 PRAMEF22A3QJZ6 481 aa28.07■■■□□ 2.08
PKP3-211ENST00000534401 COL15A1P39059 1388 aa28.07■■■□□ 2.08
PKP3-211ENST00000534401 IL6STP40189 918 aaPredicted RBP28.06■■■□□ 2.08
PKP3-211ENST00000534401 MRS2Q9HD23 443 aa28.06■■■□□ 2.08
PKP3-211ENST00000534401 NARFQ9UHQ1 456 aa28.06■■■□□ 2.08
PKP3-211ENST00000534401 APAF1O14727 1248 aa28.05■■■□□ 2.08
PKP3-211ENST00000534401 GIGYF1O75420 1035 aaPredicted RBP28.05■■■□□ 2.08
PKP3-211ENST00000534401 A1BGP04217 495 aa28.05■■■□□ 2.08
PKP3-211ENST00000534401 NEUROD2Q15784 382 aa28.05■■■□□ 2.08
PKP3-211ENST00000534401 SRP68Q9UHB9 627 aaKnown RBP28.05■■■□□ 2.08
PKP3-211ENST00000534401 CHL1O00533 1208 aa28.04■■■□□ 2.08
PKP3-211ENST00000534401 CANXP27824 592 aaKnown RBP28.04■■■□□ 2.08
PKP3-211ENST00000534401 CD2APQ9Y5K6 639 aa28.04■■■□□ 2.08
PKP3-211ENST00000534401 LAMB4A4D0S4 1761 aa28.04■■■□□ 2.08
PKP3-211ENST00000534401 MMP10P09238 476 aa28.03■■■□□ 2.08
PKP3-211ENST00000534401 FKBP8Q14318 412 aa28.02■■■□□ 2.08
PKP3-211ENST00000534401 NCBP3Q53F19 620 aaKnown RBP28.02■■■□□ 2.08
PKP3-211ENST00000534401 BCL2L12Q9HB09 334 aa28.02■■■□□ 2.08
PKP3-211ENST00000534401 A0A087WZG4 1122 aa28.01■■■□□ 2.07
PKP3-211ENST00000534401 TM4SF1P30408 202 aa28.01■■■□□ 2.07
PKP3-211ENST00000534401 KIF13BQ9NQT8 1826 aa28.01■■■□□ 2.07
PKP3-211ENST00000534401 TSPYL4Q9UJ04 414 aa28■■■□□ 2.07
PKP3-211ENST00000534401 NBPF26B4DH59 902 aa27.99■■■□□ 2.07
PKP3-211ENST00000534401 ZPR1O75312 459 aa27.99■■■□□ 2.07
PKP3-211ENST00000534401 USPL1Q5W0Q7 1092 aa27.99■■■□□ 2.07
PKP3-211ENST00000534401 NBPF10Q6P3W6 841 aaKnown RBP27.99■■■□□ 2.07
PKP3-211ENST00000534401 NBPF15Q8N660 670 aa27.99■■■□□ 2.07
PKP3-211ENST00000534401 ZNF853P0CG23 659 aa27.98■■■□□ 2.07
PKP3-211ENST00000534401 NLGN2Q8NFZ4 835 aa27.97■■■□□ 2.07
PKP3-211ENST00000534401 CFAP44Q96MT7 982 aa27.96■■■□□ 2.07
PKP3-211ENST00000534401 SCN7AQ01118 1682 aa27.96■■■□□ 2.07
PKP3-211ENST00000534401 DDR1Q08345 913 aa27.95■■■□□ 2.06
PKP3-211ENST00000534401 CCDC27Q2M243 656 aa27.95■■■□□ 2.06
PKP3-211ENST00000534401 C10orf71Q711Q0 1435 aa27.93■■■□□ 2.06
PKP3-211ENST00000534401 NRXN2Q9P2S2 1712 aa27.93■■■□□ 2.06
PKP3-211ENST00000534401 POLRMTO00411 1230 aaKnown RBP27.93■■■□□ 2.06
PKP3-211ENST00000534401 RGL2O15211 777 aa27.93■■■□□ 2.06
PKP3-211ENST00000534401 CAMTA2O94983 1202 aa27.93■■■□□ 2.06
PKP3-211ENST00000534401 PARP3Q9Y6F1 533 aa27.93■■■□□ 2.06
PKP3-211ENST00000534401 BCORQ6W2J9 1755 aa27.93■■■□□ 2.06
PKP3-211ENST00000534401 KIAA1551Q9HCM1 1747 aa27.92■■■□□ 2.06
PKP3-211ENST00000534401 NFIXQ14938 502 aa27.92■■■□□ 2.06
PKP3-211ENST00000534401 ERBB4Q15303 1308 aa27.92■■■□□ 2.06
PKP3-211ENST00000534401 PIP4K2AP48426 406 aaPredicted RBP27.91■■■□□ 2.06
PKP3-211ENST00000534401 TBC1D2BQ9UPU7 963 aa27.91■■■□□ 2.06
PKP3-211ENST00000534401 AFDNP55196 1824 aaKnown RBP27.9■■■□□ 2.06
PKP3-211ENST00000534401 CALD1Q05682 793 aaKnown RBP27.9■■■□□ 2.06
PKP3-211ENST00000534401 KLHL34Q8N239 644 aa27.9■■■□□ 2.06
PKP3-211ENST00000534401 IFT57Q9NWB7 429 aa27.9■■■□□ 2.06
PKP3-211ENST00000534401 DZIP3Q86Y13 1208 aaKnown RBP27.89■■■□□ 2.06
PKP3-211ENST00000534401 CLEC4GQ6UXB4 293 aa27.88■■■□□ 2.05
PKP3-211ENST00000534401 LRP10Q7Z4F1 713 aa27.88■■■□□ 2.05
PKP3-211ENST00000534401 PDIA6Q15084 440 aa27.87■■■□□ 2.05
PKP3-211ENST00000534401 MBIPQ9NS73 344 aa27.87■■■□□ 2.05
PKP3-211ENST00000534401 HOXB7P09629 217 aa27.86■■■□□ 2.05
PKP3-211ENST00000534401 TGFB2P61812 414 aa27.86■■■□□ 2.05
PKP3-211ENST00000534401 GNAI1P63096 354 aa27.86■■■□□ 2.05
PKP3-211ENST00000534401 WWC1Q8IX03 1113 aa27.86■■■□□ 2.05
PKP3-211ENST00000534401 DCAF8L1A6NGE4 600 aa27.85■■■□□ 2.05
PKP3-211ENST00000534401 TBC1D9BQ66K14 1250 aa27.85■■■□□ 2.05
PKP3-211ENST00000534401 NPM2Q86SE8 214 aaKnown RBP27.85■■■□□ 2.05
PKP3-211ENST00000534401 ZNF330Q9Y3S2 320 aaPredicted RBP27.85■■■□□ 2.05
PKP3-211ENST00000534401 PXDNLA1KZ92 1463 aa27.84■■■□□ 2.05
PKP3-211ENST00000534401 KRT24Q2M2I5 525 aa27.84■■■□□ 2.05
PKP3-211ENST00000534401 LAS1LQ9Y4W2 734 aaKnown RBP27.84■■■□□ 2.05
PKP3-211ENST00000534401 SERPINB2P05120 415 aa27.82■■■□□ 2.04
PKP3-211ENST00000534401 IL16Q14005 1332 aa27.82■■■□□ 2.04
PKP3-211ENST00000534401 BRCA1P38398 1863 aaKnown RBP27.81■■■□□ 2.04
PKP3-211ENST00000534401 ERVV-1B6SEH8 477 aa27.81■■■□□ 2.04
PKP3-211ENST00000534401 NGEFQ8N5V2 710 aa27.81■■■□□ 2.04
PKP3-211ENST00000534401 N4BP2Q86UW6 1770 aaPredicted RBP27.81■■■□□ 2.04
PKP3-211ENST00000534401 CCER2I3L3R5 266 aa27.8■■■□□ 2.04
PKP3-211ENST00000534401 FAM9BQ8IZU0 186 aa27.8■■■□□ 2.04
PKP3-211ENST00000534401 NUP98P52948 1817 aa27.79■■■□□ 2.04
PKP3-211ENST00000534401 YBX3P16989 372 aaKnown RBP eCLIP27.79■■■□□ 2.04
PKP3-211ENST00000534401 KCNA3P22001 575 aa27.79■■■□□ 2.04
PKP3-211ENST00000534401 EIF2S2P20042 333 aaKnown RBP27.78■■■□□ 2.04
PKP3-211ENST00000534401 GPR162Q16538 588 aa27.78■■■□□ 2.04
PKP3-211ENST00000534401 TTLL7Q6ZT98 887 aa27.78■■■□□ 2.04
PKP3-211ENST00000534401 CHD4Q14839 1912 aa27.78■■■□□ 2.04
PKP3-211ENST00000534401 GOLGB1Q14789 3259 aaKnown RBP27.77■■■□□ 2.04
PKP3-211ENST00000534401 CARMIL3Q8ND23 1372 aa27.77■■■□□ 2.04
PKP3-211ENST00000534401 MAP3K15Q6ZN16 1313 aa27.77■■■□□ 2.04
PKP3-211ENST00000534401 PROSER3Q2NL68 480 aa27.77■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms