RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 MTHFSP49914 203 aa11.04□□□□□ -0.64
NEDD8-207ENST00000533242 RRAGCQ9HB90 399 aa11.04□□□□□ -0.64
NEDD8-207ENST00000533242 TSHZ2Q9NRE2 1034 aa11.04□□□□□ -0.64
NEDD8-207ENST00000533242 TM4SF1P30408 202 aa11.03□□□□□ -0.64
NEDD8-207ENST00000533242 TNNT2P45379 298 aaPredicted RBP11.03□□□□□ -0.64
NEDD8-207ENST00000533242 C1orf141Q5JVX7 400 aa11.03□□□□□ -0.64
NEDD8-207ENST00000533242 SMC1BQ8NDV3 1235 aa11.03□□□□□ -0.64
NEDD8-207ENST00000533242 POLRMTO00411 1230 aaKnown RBP11.03□□□□□ -0.64
NEDD8-207ENST00000533242 PTCD1O75127 700 aaKnown RBP11.03□□□□□ -0.64
NEDD8-207ENST00000533242 CHRNA5P30532 468 aa11.03□□□□□ -0.64
NEDD8-207ENST00000533242 HTRA3P83110 453 aa11.03□□□□□ -0.64
NEDD8-207ENST00000533242 GOLGB1Q14789 3259 aaKnown RBP11.02□□□□□ -0.64
NEDD8-207ENST00000533242 INTS5Q6P9B9 1019 aaKnown RBP11.02□□□□□ -0.64
NEDD8-207ENST00000533242 COL13A1Q5TAT6 717 aaPredicted RBP11.02□□□□□ -0.65
NEDD8-207ENST00000533242 NFATC2IPQ8NCF5 419 aa11.02□□□□□ -0.65
NEDD8-207ENST00000533242 CNGB1Q14028 1251 aaPredicted RBP11.01□□□□□ -0.65
NEDD8-207ENST00000533242 DICER1Q9UPY3 1922 aaKnown RBP11.01□□□□□ -0.65
NEDD8-207ENST00000533242 SOS1Q07889 1333 aaPredicted RBP11□□□□□ -0.65
NEDD8-207ENST00000533242 MRC1P22897 1456 aa11□□□□□ -0.65
NEDD8-207ENST00000533242 ZPR1O75312 459 aa11□□□□□ -0.65
NEDD8-207ENST00000533242 AEBP1Q8IUX7 1158 aa11□□□□□ -0.65
NEDD8-207ENST00000533242 USPL1Q5W0Q7 1092 aa11□□□□□ -0.65
NEDD8-207ENST00000533242 FAM9BQ8IZU0 186 aa11□□□□□ -0.65
NEDD8-207ENST00000533242 UBR2Q8IWV8 1755 aa10.99□□□□□ -0.65
NEDD8-207ENST00000533242 RASSF7Q02833 373 aa10.99□□□□□ -0.65
NEDD8-207ENST00000533242 DNAJC10Q8IXB1 793 aa10.99□□□□□ -0.65
NEDD8-207ENST00000533242 TNS4Q8IZW8 715 aa10.99□□□□□ -0.65
NEDD8-207ENST00000533242 POLR3GLQ9BT43 218 aa10.99□□□□□ -0.65
NEDD8-207ENST00000533242 MRS2Q9HD23 443 aa10.99□□□□□ -0.65
NEDD8-207ENST00000533242 LMNB1P20700 586 aa10.98□□□□□ -0.65
NEDD8-207ENST00000533242 NARFQ9UHQ1 456 aa10.98□□□□□ -0.65
NEDD8-207ENST00000533242 GLTPD2A6NH11 291 aa10.98□□□□□ -0.65
NEDD8-207ENST00000533242 VEGFAP15692 232 aaPredicted RBP10.98□□□□□ -0.65
NEDD8-207ENST00000533242 PRELPP51888 382 aa10.98□□□□□ -0.65
NEDD8-207ENST00000533242 IRX6P78412 446 aaPredicted RBP10.98□□□□□ -0.65
NEDD8-207ENST00000533242 NFIXQ14938 502 aa10.98□□□□□ -0.65
NEDD8-207ENST00000533242 SULT6B1Q6IMI4 303 aa10.98□□□□□ -0.65
NEDD8-207ENST00000533242 ANKRD31Q8N7Z5 1873 aa10.98□□□□□ -0.65
NEDD8-207ENST00000533242 COL15A1P39059 1388 aa10.97□□□□□ -0.65
NEDD8-207ENST00000533242 CYP19A1P11511 503 aaPredicted RBP10.97□□□□□ -0.65
NEDD8-207ENST00000533242 AKAP4Q5JQC9 854 aa10.97□□□□□ -0.65
NEDD8-207ENST00000533242 PANK3Q9H999 370 aa10.97□□□□□ -0.65
NEDD8-207ENST00000533242 SLC52A2Q9HAB3 445 aa10.97□□□□□ -0.65
NEDD8-207ENST00000533242 FER1L6Q2WGJ9 1857 aa10.97□□□□□ -0.65
NEDD8-207ENST00000533242 MORC1Q86VD1 984 aa10.97□□□□□ -0.65
NEDD8-207ENST00000533242 TTLL6Q8N841 843 aa10.97□□□□□ -0.65
NEDD8-207ENST00000533242 CAPN15O75808 1086 aa10.96□□□□□ -0.65
NEDD8-207ENST00000533242 IL13P35225 146 aa10.96□□□□□ -0.65
NEDD8-207ENST00000533242 SCN7AQ01118 1682 aa10.96□□□□□ -0.66
NEDD8-207ENST00000533242 SERPINB2P05120 415 aa10.96□□□□□ -0.66
NEDD8-207ENST00000533242 NEFLP07196 543 aa10.96□□□□□ -0.66
NEDD8-207ENST00000533242 C2CD5Q86YS7 1000 aa10.96□□□□□ -0.66
NEDD8-207ENST00000533242 ARFGEF2Q9Y6D5 1785 aa10.95□□□□□ -0.66
NEDD8-207ENST00000533242 COL11A2P13942 1736 aaPredicted RBP10.95□□□□□ -0.66
NEDD8-207ENST00000533242 HSPA1AP0DMV8 641 aaKnown RBP10.95□□□□□ -0.66
NEDD8-207ENST00000533242 HSPA1BP0DMV9 641 aaKnown RBP10.95□□□□□ -0.66
NEDD8-207ENST00000533242 BCL2L12Q9HB09 334 aa10.95□□□□□ -0.66
NEDD8-207ENST00000533242 H0YIN7 160 aa10.95□□□□□ -0.66
NEDD8-207ENST00000533242 RNMTO43148 476 aaKnown RBP10.95□□□□□ -0.66
NEDD8-207ENST00000533242 KCNA4P22459 653 aa10.95□□□□□ -0.66
NEDD8-207ENST00000533242 VSIG10Q8N0Z9 540 aa10.95□□□□□ -0.66
NEDD8-207ENST00000533242 PDZRN3Q9UPQ7 1066 aa10.95□□□□□ -0.66
NEDD8-207ENST00000533242 NFKBIEO00221 500 aa10.94□□□□□ -0.66
NEDD8-207ENST00000533242 LGR6Q9HBX8 967 aa10.94□□□□□ -0.66
NEDD8-207ENST00000533242 ZBTB1Q9Y2K1 713 aa10.94□□□□□ -0.66
NEDD8-207ENST00000533242 CACNA1SQ13698 1873 aa10.94□□□□□ -0.66
NEDD8-207ENST00000533242 CARMIL3Q8ND23 1372 aa10.93□□□□□ -0.66
NEDD8-207ENST00000533242 A0A087WZG4 1122 aa10.93□□□□□ -0.66
NEDD8-207ENST00000533242 POTECB2RU33 542 aa10.93□□□□□ -0.66
NEDD8-207ENST00000533242 SLC39A6Q13433 755 aa10.93□□□□□ -0.66
NEDD8-207ENST00000533242 SIPA1L3O60292 1781 aaPredicted RBP10.93□□□□□ -0.66
NEDD8-207ENST00000533242 DPY19L2Q6NUT2 758 aa10.92□□□□□ -0.66
NEDD8-207ENST00000533242 BCORQ6W2J9 1755 aa10.92□□□□□ -0.66
NEDD8-207ENST00000533242 CANXP27824 592 aaKnown RBP10.91□□□□□ -0.66
NEDD8-207ENST00000533242 PDE6BP35913 854 aa10.91□□□□□ -0.66
NEDD8-207ENST00000533242 EIF5P55010 431 aaKnown RBP10.91□□□□□ -0.66
NEDD8-207ENST00000533242 LTBP3Q9NS15 1303 aa10.91□□□□□ -0.66
NEDD8-207ENST00000533242 SCN4AP35499 1836 aa10.9□□□□□ -0.66
NEDD8-207ENST00000533242 ZBED9Q6R2W3 1325 aa10.9□□□□□ -0.66
NEDD8-207ENST00000533242 BRIP1Q9BX63 1249 aa10.9□□□□□ -0.66
NEDD8-207ENST00000533242 KNSTRNQ9Y448 316 aa10.9□□□□□ -0.66
NEDD8-207ENST00000533242 SLX4Q8IY92 1834 aa10.9□□□□□ -0.66
NEDD8-207ENST00000533242 STARD3NLO95772 234 aa10.9□□□□□ -0.67
NEDD8-207ENST00000533242 CHADLQ6NUI6 762 aa10.9□□□□□ -0.67
NEDD8-207ENST00000533242 ZNF622Q969S3 477 aaKnown RBP eCLIP10.9□□□□□ -0.671e-16■□□□□ 9.9
NEDD8-207ENST00000533242 CREBZFQ9NS37 354 aa10.9□□□□□ -0.67
NEDD8-207ENST00000533242 MTHFSDQ2M296 383 aaKnown RBP10.89□□□□□ -0.67
NEDD8-207ENST00000533242 ERFEQ4G0M1 354 aa10.89□□□□□ -0.67
NEDD8-207ENST00000533242 TBC1D9BQ66K14 1250 aa10.89□□□□□ -0.67
NEDD8-207ENST00000533242 BICDL1Q6ZP65 573 aa10.89□□□□□ -0.67
NEDD8-207ENST00000533242 C21orf2O43822 256 aa10.89□□□□□ -0.67
NEDD8-207ENST00000533242 TTC5Q8N0Z6 440 aa10.89□□□□□ -0.67
NEDD8-207ENST00000533242 HMOX1P09601 288 aa10.88□□□□□ -0.67
NEDD8-207ENST00000533242 STYK1Q6J9G0 422 aa10.88□□□□□ -0.67
NEDD8-207ENST00000533242 PRR5LQ6MZQ0 368 aa10.88□□□□□ -0.67
NEDD8-207ENST00000533242 TEX13AQ9BXU3 409 aaPredicted RBP10.88□□□□□ -0.67
NEDD8-207ENST00000533242 HEG1Q9ULI3 1381 aa10.88□□□□□ -0.67
NEDD8-207ENST00000533242 AMER1Q5JTC6 1135 aaPredicted RBP10.87□□□□□ -0.67
NEDD8-207ENST00000533242 CNKSR1Q969H4 720 aa10.87□□□□□ -0.67
NEDD8-207ENST00000533242 TAOK3Q9H2K8 898 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms