RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 REREQ9P2R6 1566 aa16.77■□□□□ 0.28
PCF11-204ENST00000530660 DNM1Q05193 864 aaKnown RBP16.77■□□□□ 0.27
PCF11-204ENST00000530660 TYRO3Q06418 890 aa16.77■□□□□ 0.27
PCF11-204ENST00000530660 HTATSF1O43719 755 aaKnown RBP16.76■□□□□ 0.27
PCF11-204ENST00000530660 BRPF1P55201 1214 aaPredicted RBP16.76■□□□□ 0.27
PCF11-204ENST00000530660 ANO6Q4KMQ2 910 aa16.76■□□□□ 0.27
PCF11-204ENST00000530660 TSHZ3Q63HK5 1081 aa16.76■□□□□ 0.27
PCF11-204ENST00000530660 PLA2G4DQ86XP0 818 aa16.76■□□□□ 0.27
PCF11-204ENST00000530660 TSPYL6Q8N831 410 aa16.76■□□□□ 0.27
PCF11-204ENST00000530660 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.76■□□□□ 0.27
PCF11-204ENST00000530660 JRKLQ9Y4A0 524 aa16.76■□□□□ 0.27
PCF11-204ENST00000530660 CTR9Q6PD62 1173 aa16.76■□□□□ 0.27
PCF11-204ENST00000530660 SRLQ86TD4 932 aa16.76■□□□□ 0.27
PCF11-204ENST00000530660 SLC26A8Q96RN1 970 aa16.76■□□□□ 0.27
PCF11-204ENST00000530660 CABP2Q9NPB3 220 aa16.76■□□□□ 0.27
PCF11-204ENST00000530660 RRP15Q9Y3B9 282 aaKnown RBP16.76■□□□□ 0.27
PCF11-204ENST00000530660 TET3O43151 1660 aa16.75■□□□□ 0.27
PCF11-204ENST00000530660 ARHGAP29Q52LW3 1261 aa16.75■□□□□ 0.27
PCF11-204ENST00000530660 PLCH2O75038 1416 aa16.75■□□□□ 0.27
PCF11-204ENST00000530660 SYT1P21579 422 aa16.75■□□□□ 0.27
PCF11-204ENST00000530660 CNPY4Q8N129 248 aa16.75■□□□□ 0.27
PCF11-204ENST00000530660 SEC31AO94979 1220 aaKnown RBP16.75■□□□□ 0.27
PCF11-204ENST00000530660 TSGA10IPQ3SY00 556 aa16.75■□□□□ 0.27
PCF11-204ENST00000530660 LRRC8AQ8IWT6 810 aa16.75■□□□□ 0.27
PCF11-204ENST00000530660 MRPL50Q8N5N7 158 aaKnown RBP16.75■□□□□ 0.27
PCF11-204ENST00000530660 QRICH2Q9H0J4 1663 aa16.75■□□□□ 0.27
PCF11-204ENST00000530660 SKILP12757 684 aa16.74■□□□□ 0.27
PCF11-204ENST00000530660 THUMPD2Q9BTF0 503 aaKnown RBP16.74■□□□□ 0.27
PCF11-204ENST00000530660 ANO2Q9NQ90 1003 aa16.74■□□□□ 0.27
PCF11-204ENST00000530660 CCDC171Q6TFL3 1326 aa16.74■□□□□ 0.27
PCF11-204ENST00000530660 RTL1A6NKG5 1358 aa16.74■□□□□ 0.27
PCF11-204ENST00000530660 USP32Q8NFA0 1604 aa16.74■□□□□ 0.27
PCF11-204ENST00000530660 STX6O43752 255 aa16.74■□□□□ 0.27
PCF11-204ENST00000530660 TPM4P67936 248 aa16.74■□□□□ 0.27
PCF11-204ENST00000530660 E2F4Q16254 413 aa16.74■□□□□ 0.27
PCF11-204ENST00000530660 PACS2Q86VP3 889 aa16.74■□□□□ 0.27
PCF11-204ENST00000530660 BANK1Q8NDB2 785 aa16.74■□□□□ 0.27
PCF11-204ENST00000530660 RAD50Q92878 1312 aa16.74■□□□□ 0.27
PCF11-204ENST00000530660 SAFB2Q14151 953 aaKnown RBP eCLIP16.73■□□□□ 0.27
PCF11-204ENST00000530660 UHRF1BP1LA0JNW5 1464 aa16.73■□□□□ 0.27
PCF11-204ENST00000530660 F13A1P00488 732 aa16.73■□□□□ 0.27
PCF11-204ENST00000530660 ABCC1P33527 1531 aa16.73■□□□□ 0.27
PCF11-204ENST00000530660 MAP3K11Q16584 847 aa16.73■□□□□ 0.27
PCF11-204ENST00000530660 ZRANB2O95218 330 aaKnown RBP eCLIP16.72■□□□□ 0.271e-6■■□□□ 12.4
PCF11-204ENST00000530660 MROH2AA6NES4 1674 aa16.72■□□□□ 0.27
PCF11-204ENST00000530660 VAMP4O75379 141 aa16.72■□□□□ 0.27
PCF11-204ENST00000530660 LIG1P18858 919 aa16.72■□□□□ 0.27
PCF11-204ENST00000530660 OAS2P29728 719 aaKnown RBP16.72■□□□□ 0.27
PCF11-204ENST00000530660 GORABQ5T7V8 394 aa16.72■□□□□ 0.27
PCF11-204ENST00000530660 NSD2O96028 1365 aa16.71■□□□□ 0.27
PCF11-204ENST00000530660 TMCO3Q6UWJ1 677 aa16.71■□□□□ 0.27
PCF11-204ENST00000530660 NRXN1Q9ULB1 1477 aa16.71■□□□□ 0.27
PCF11-204ENST00000530660 RGS12O14924 1447 aa16.71■□□□□ 0.27
PCF11-204ENST00000530660 CCDC34Q96HJ3 373 aa16.71■□□□□ 0.27
PCF11-204ENST00000530660 NUP62CLQ9H1M0 184 aa16.71■□□□□ 0.27
PCF11-204ENST00000530660 C14orf93Q9H972 538 aaKnown RBP16.71■□□□□ 0.27
PCF11-204ENST00000530660 ZC3H13Q5T200 1668 aaKnown RBP16.7■□□□□ 0.26
PCF11-204ENST00000530660 ABCC4O15439 1325 aa16.7■□□□□ 0.26
PCF11-204ENST00000530660 GPS2Q13227 327 aa16.7■□□□□ 0.26
PCF11-204ENST00000530660 AXDND1Q5T1B0 1012 aaPredicted RBP16.7■□□□□ 0.26
PCF11-204ENST00000530660 FILIP1Q7Z7B0 1213 aa16.7■□□□□ 0.26
PCF11-204ENST00000530660 BRMS1Q9HCU9 246 aa16.7■□□□□ 0.26
PCF11-204ENST00000530660 KNDC1Q76NI1 1749 aa16.7■□□□□ 0.26
PCF11-204ENST00000530660 LMAN1P49257 510 aa16.7■□□□□ 0.26
PCF11-204ENST00000530660 REXO1L1PQ8IX06 675 aa16.7■□□□□ 0.26
PCF11-204ENST00000530660 CCAR2Q8N163 923 aaKnown RBP16.7■□□□□ 0.26
PCF11-204ENST00000530660 ESYT1Q9BSJ8 1104 aa16.7■□□□□ 0.26
PCF11-204ENST00000530660 CWC15Q9P013 229 aaKnown RBP16.7■□□□□ 0.26
PCF11-204ENST00000530660 COL3A1P02461 1466 aaPredicted RBP16.7■□□□□ 0.26
PCF11-204ENST00000530660 KIF1BO60333 1816 aa16.7■□□□□ 0.26
PCF11-204ENST00000530660 INO80Q9ULG1 1556 aaPredicted RBP16.7■□□□□ 0.26
PCF11-204ENST00000530660 MCCP23508 829 aa16.7■□□□□ 0.26
PCF11-204ENST00000530660 RNF20Q5VTR2 975 aa16.7■□□□□ 0.26
PCF11-204ENST00000530660 FBXO18Q8NFZ0 1043 aa16.7■□□□□ 0.26
PCF11-204ENST00000530660 USP16Q9Y5T5 823 aa16.7■□□□□ 0.26
PCF11-204ENST00000530660 DEPDC5O75140 1603 aa16.7■□□□□ 0.26
PCF11-204ENST00000530660 YEATS2Q9ULM3 1422 aa16.7■□□□□ 0.26
PCF11-204ENST00000530660 EVC2Q86UK5 1308 aa16.69■□□□□ 0.26
PCF11-204ENST00000530660 A0A1B0GUL7 405 aa16.69■□□□□ 0.26
PCF11-204ENST00000530660 SASH3O75995 380 aa16.69■□□□□ 0.26
PCF11-204ENST00000530660 TTC31Q49AM3 519 aaPredicted RBP16.69■□□□□ 0.26
PCF11-204ENST00000530660 NUTM2DQ5VT03 806 aaPredicted RBP16.69■□□□□ 0.26
PCF11-204ENST00000530660 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.69■□□□□ 0.26
PCF11-204ENST00000530660 GOLGA6L1Q8N7Z2 621 aa16.69■□□□□ 0.26
PCF11-204ENST00000530660 DNAJC25Q9H1X3 360 aa16.69■□□□□ 0.26
PCF11-204ENST00000530660 SENP3Q9H4L4 574 aaPredicted RBP16.69■□□□□ 0.26
PCF11-204ENST00000530660 IFT172Q9UG01 1749 aa16.69■□□□□ 0.26
PCF11-204ENST00000530660 PIK3R4Q99570 1358 aa16.69■□□□□ 0.26
PCF11-204ENST00000530660 ZFYVE16Q7Z3T8 1539 aa16.69■□□□□ 0.26
PCF11-204ENST00000530660 DIAPH1O60610 1272 aaKnown RBP16.69■□□□□ 0.26
PCF11-204ENST00000530660 ANKRD65E5RJM6 399 aa16.68■□□□□ 0.26
PCF11-204ENST00000530660 CASTP20810 708 aaKnown RBP16.68■□□□□ 0.26
PCF11-204ENST00000530660 ZNF622Q969S3 477 aaKnown RBP eCLIP16.68■□□□□ 0.261e-7■■□□□ 13.6
PCF11-204ENST00000530660 EPC1Q9H2F5 836 aa16.68■□□□□ 0.26
PCF11-204ENST00000530660 ZNF165P49910 485 aa16.68■□□□□ 0.26
PCF11-204ENST00000530660 ARHGAP45Q92619 1136 aa16.68■□□□□ 0.26
PCF11-204ENST00000530660 PTCH1Q13635 1447 aa16.68■□□□□ 0.26
PCF11-204ENST00000530660 CCDC69A6NI79 296 aa16.68■□□□□ 0.26
PCF11-204ENST00000530660 TNMDQ9H2S6 317 aa16.68■□□□□ 0.26
PCF11-204ENST00000530660 CEP83Q9Y592 693 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 238.8 ms