RNA–Protein interactions for RNA: ENST00000527920.5

SSSCA1-205, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

TSL 3 BASIC

Gene SSSCA1, Length 806 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-205ENST00000527920 DCTN1Q14203 1278 aa43.77■■■■■ 4.6
SSSCA1-205ENST00000527920 PRKRIP1Q9H875 184 aaPredicted RBP43.76■■■■■ 4.6
SSSCA1-205ENST00000527920 KCNQ3O43525 872 aa43.74■■■■■ 4.59
SSSCA1-205ENST00000527920 ZPR1O75312 459 aa43.73■■■■■ 4.59
SSSCA1-205ENST00000527920 TAF7Q15545 349 aaPredicted RBP43.73■■■■■ 4.59
SSSCA1-205ENST00000527920 FKBP8Q14318 412 aa43.72■■■■■ 4.59
SSSCA1-205ENST00000527920 NARFQ9UHQ1 456 aa43.72■■■■■ 4.59
SSSCA1-205ENST00000527920 PARP3Q9Y6F1 533 aa43.72■■■■■ 4.59
SSSCA1-205ENST00000527920 GOLGB1Q14789 3259 aaKnown RBP43.72■■■■■ 4.59
SSSCA1-205ENST00000527920 C10orf71Q711Q0 1435 aa43.72■■■■■ 4.59
SSSCA1-205ENST00000527920 EIF5P55010 431 aaKnown RBP43.7■■■■■ 4.59
SSSCA1-205ENST00000527920 PELP1Q8IZL8 1130 aaKnown RBP43.7■■■■■ 4.59
SSSCA1-205ENST00000527920 GRIN3BO60391 1043 aa43.69■■■■■ 4.58
SSSCA1-205ENST00000527920 CANXP27824 592 aaKnown RBP43.69■■■■■ 4.58
SSSCA1-205ENST00000527920 KIF13BQ9NQT8 1826 aa43.69■■■■■ 4.58
SSSCA1-205ENST00000527920 DLG5Q8TDM6 1919 aa43.68■■■■■ 4.58
SSSCA1-205ENST00000527920 YBX3P16989 372 aaKnown RBP eCLIP43.68■■■■■ 4.58
SSSCA1-205ENST00000527920 USPL1Q5W0Q7 1092 aa43.67■■■■■ 4.58
SSSCA1-205ENST00000527920 PNISRQ8TF01 805 aaKnown RBP43.67■■■■■ 4.58
SSSCA1-205ENST00000527920 A0A087WZG4 1122 aa43.66■■■■■ 4.58
SSSCA1-205ENST00000527920 SNRPA1P09661 255 aaKnown RBP43.66■■■■■ 4.58
SSSCA1-205ENST00000527920 TM4SF1P30408 202 aa43.64■■■■■ 4.58
SSSCA1-205ENST00000527920 IL6STP40189 918 aaPredicted RBP43.64■■■■■ 4.58
SSSCA1-205ENST00000527920 TGFB2P61812 414 aa43.64■■■■■ 4.58
SSSCA1-205ENST00000527920 CHD4Q14839 1912 aa43.62■■■■■ 4.57
SSSCA1-205ENST00000527920 DDR1Q08345 913 aa43.62■■■■■ 4.57
SSSCA1-205ENST00000527920 PXDNLA1KZ92 1463 aa43.61■■■■■ 4.57
SSSCA1-205ENST00000527920 POLRMTO00411 1230 aaKnown RBP43.59■■■■■ 4.57
SSSCA1-205ENST00000527920 A1BGP04217 495 aa43.59■■■■■ 4.57
SSSCA1-205ENST00000527920 WDR43Q15061 677 aaKnown RBP eCLIP43.59■■■■■ 4.57
SSSCA1-205ENST00000527920 BCL2L12Q9HB09 334 aa43.59■■■■■ 4.57
SSSCA1-205ENST00000527920 USP16Q9Y5T5 823 aa43.59■■■■■ 4.57
SSSCA1-205ENST00000527920 TMPOP42166 694 aaKnown RBP43.55■■■■■ 4.56
SSSCA1-205ENST00000527920 RIPK4P57078 832 aa43.55■■■■■ 4.56
SSSCA1-205ENST00000527920 LMOD3Q0VAK6 560 aa43.55■■■■■ 4.56
SSSCA1-205ENST00000527920 THUMPD2Q9BTF0 503 aaKnown RBP43.55■■■■■ 4.56
SSSCA1-205ENST00000527920 KIAA1551Q9HCM1 1747 aa43.55■■■■■ 4.56
SSSCA1-205ENST00000527920 NFIXQ14938 502 aa43.54■■■■■ 4.56
SSSCA1-205ENST00000527920 MIS18AQ9NYP9 233 aa43.54■■■■■ 4.56
SSSCA1-205ENST00000527920 KDM3BQ7LBC6 1761 aa43.54■■■■■ 4.56
SSSCA1-205ENST00000527920 PRAMEF22A3QJZ6 481 aa43.53■■■■■ 4.56
SSSCA1-205ENST00000527920 NPM2Q86SE8 214 aaKnown RBP43.53■■■■■ 4.56
SSSCA1-205ENST00000527920 RUNDC1Q96C34 613 aa43.51■■■■■ 4.56
SSSCA1-205ENST00000527920 ZNF316A6NFI3 1004 aaPredicted RBP43.5■■■■■ 4.55
SSSCA1-205ENST00000527920 SCN7AQ01118 1682 aa43.49■■■■■ 4.55
SSSCA1-205ENST00000527920 ADAMTS8Q9UP79 889 aa43.49■■■■■ 4.55
SSSCA1-205ENST00000527920 ZNF330Q9Y3S2 320 aaPredicted RBP43.49■■■■■ 4.55
SSSCA1-205ENST00000527920 EIF4A1P60842 406 aaKnown RBP43.47■■■■■ 4.55
SSSCA1-205ENST00000527920 BABAM1Q9NWV8 329 aa43.47■■■■■ 4.55
SSSCA1-205ENST00000527920 A0A0G2JLW4 131 aa43.46■■■■■ 4.55
SSSCA1-205ENST00000527920 CCDC146Q8IYE0 955 aa43.46■■■■■ 4.55
SSSCA1-205ENST00000527920 TBC1D2BQ9UPU7 963 aa43.46■■■■■ 4.55
SSSCA1-205ENST00000527920 NRXN2Q9P2S2 1712 aa43.45■■■■■ 4.55
SSSCA1-205ENST00000527920 DPEP1P16444 411 aa43.45■■■■■ 4.55
SSSCA1-205ENST00000527920 GIGYF1O75420 1035 aaPredicted RBP43.44■■■■■ 4.54
SSSCA1-205ENST00000527920 CAMTA2O94983 1202 aa43.44■■■■■ 4.54
SSSCA1-205ENST00000527920 ZNF784Q8NCA9 323 aaPredicted RBP43.43■■■■■ 4.54
SSSCA1-205ENST00000527920 LAMB4A4D0S4 1761 aa43.42■■■■■ 4.54
SSSCA1-205ENST00000527920 N4BP2Q86UW6 1770 aaPredicted RBP43.42■■■■■ 4.54
SSSCA1-205ENST00000527920 DZIP3Q86Y13 1208 aaKnown RBP43.42■■■■■ 4.54
SSSCA1-205ENST00000527920 SERPINB2P05120 415 aa43.41■■■■■ 4.54
SSSCA1-205ENST00000527920 NBPF26B4DH59 902 aa43.4■■■■■ 4.54
SSSCA1-205ENST00000527920 RGL2O15211 777 aa43.4■■■■■ 4.54
SSSCA1-205ENST00000527920 KCNA3P22001 575 aa43.4■■■■■ 4.54
SSSCA1-205ENST00000527920 NBPF10Q6P3W6 841 aaKnown RBP43.4■■■■■ 4.54
SSSCA1-205ENST00000527920 NBPF15Q8N660 670 aa43.4■■■■■ 4.54
SSSCA1-205ENST00000527920 TSPYL4Q9UJ04 414 aa43.4■■■■■ 4.54
SSSCA1-205ENST00000527920 WWC3Q9ULE0 1092 aa43.4■■■■■ 4.54
SSSCA1-205ENST00000527920 TBC1D9BQ66K14 1250 aa43.39■■■■■ 4.54
SSSCA1-205ENST00000527920 PIP4K2AP48426 406 aaPredicted RBP43.38■■■■■ 4.53
SSSCA1-205ENST00000527920 RRP7AQ9Y3A4 280 aaKnown RBP43.38■■■■■ 4.53
SSSCA1-205ENST00000527920 AFDNP55196 1824 aaKnown RBP43.37■■■■■ 4.53
SSSCA1-205ENST00000527920 CARMIL3Q8ND23 1372 aa43.37■■■■■ 4.53
SSSCA1-205ENST00000527920 BCORQ6W2J9 1755 aa43.36■■■■■ 4.53
SSSCA1-205ENST00000527920 CLEC4GQ6UXB4 293 aa43.36■■■■■ 4.53
SSSCA1-205ENST00000527920 BRCA1P38398 1863 aaKnown RBP43.36■■■■■ 4.53
SSSCA1-205ENST00000527920 PIM2Q9P1W9 311 aa43.35■■■■■ 4.53
SSSCA1-205ENST00000527920 BICDL1Q6ZP65 573 aa43.34■■■■■ 4.53
SSSCA1-205ENST00000527920 TRIM35Q9UPQ4 493 aa43.34■■■■■ 4.53
SSSCA1-205ENST00000527920 BCS1LQ9Y276 419 aa43.34■■■■■ 4.53
SSSCA1-205ENST00000527920 NEUROD2Q15784 382 aa43.33■■■■■ 4.53
SSSCA1-205ENST00000527920 ZNF652Q9Y2D9 606 aa43.32■■■■■ 4.53
SSSCA1-205ENST00000527920 ERBB4Q15303 1308 aa43.3■■■■■ 4.52
SSSCA1-205ENST00000527920 SETDB2Q96T68 719 aa43.3■■■■■ 4.52
SSSCA1-205ENST00000527920 CHRNA5P30532 468 aa43.28■■■■■ 4.52
SSSCA1-205ENST00000527920 CHL1O00533 1208 aa43.27■■■■■ 4.52
SSSCA1-205ENST00000527920 DALRD3Q5D0E6 543 aaKnown RBP43.27■■■■■ 4.52
SSSCA1-205ENST00000527920 PRR5LQ6MZQ0 368 aa43.24■■■■■ 4.51
SSSCA1-205ENST00000527920 PDZRN3Q9UPQ7 1066 aa43.24■■■■■ 4.51
SSSCA1-205ENST00000527920 ADCY9O60503 1353 aa43.24■■■■■ 4.51
SSSCA1-205ENST00000527920 BRIP1Q9BX63 1249 aa43.23■■■■■ 4.51
SSSCA1-205ENST00000527920 ARFGEF1Q9Y6D6 1849 aa43.22■■■■■ 4.51
SSSCA1-205ENST00000527920 CNBD1Q8NA66 436 aa43.21■■■■■ 4.51
SSSCA1-205ENST00000527920 ANP32CO43423 234 aa43.2■■■■■ 4.51
SSSCA1-205ENST00000527920 ERVV-1B6SEH8 477 aa43.19■■■■■ 4.5
SSSCA1-205ENST00000527920 APAF1O14727 1248 aa43.19■■■■■ 4.5
SSSCA1-205ENST00000527920 DLEC1Q9Y238 1755 aa43.17■■■■■ 4.5
SSSCA1-205ENST00000527920 H0YIN7 160 aa43.17■■■■■ 4.5
SSSCA1-205ENST00000527920 PDE6BP35913 854 aa43.17■■■■■ 4.5
SSSCA1-205ENST00000527920 CCDC184Q52MB2 194 aa43.17■■■■■ 4.5
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms