RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 PRAG1Q86YV5 1406 aa5.82□□□□□ -1.48
CD44-226ENST00000527889 QRICH2Q9H0J4 1663 aa5.82□□□□□ -1.48
CD44-226ENST00000527889 ZNF335Q9H4Z2 1342 aaPredicted RBP5.81□□□□□ -1.48
CD44-226ENST00000527889 NEXMIFQ5QGS0 1516 aa5.81□□□□□ -1.48
CD44-226ENST00000527889 A0A0G2JS52 829 aa5.81□□□□□ -1.48
CD44-226ENST00000527889 NR6A1Q15406 480 aa5.81□□□□□ -1.48
CD44-226ENST00000527889 DIEXFQ68CQ4 756 aaKnown RBP5.81□□□□□ -1.48
CD44-226ENST00000527889 TBC1D9Q6ZT07 1266 aa5.81□□□□□ -1.48
CD44-226ENST00000527889 DCAF11Q8TEB1 546 aa5.81□□□□□ -1.48
CD44-226ENST00000527889 THAP11Q96EK4 314 aa5.81□□□□□ -1.48
CD44-226ENST00000527889 GNEQ9Y223 722 aaKnown RBP5.81□□□□□ -1.48
CD44-226ENST00000527889 ERVK-7P63135 1459 aa5.81□□□□□ -1.48
CD44-226ENST00000527889 KDM5AP29375 1690 aaKnown RBP5.81□□□□□ -1.48
CD44-226ENST00000527889 NOS1P29475 1434 aa5.81□□□□□ -1.48
CD44-226ENST00000527889 ARHGAP31Q2M1Z3 1444 aa5.81□□□□□ -1.48
CD44-226ENST00000527889 CNTLNQ9NXG0 1405 aa5.81□□□□□ -1.48
CD44-226ENST00000527889 ARID4BQ4LE39 1312 aaPredicted RBP5.8□□□□□ -1.48
CD44-226ENST00000527889 C6orf229H3BNL8 230 aa5.8□□□□□ -1.48
CD44-226ENST00000527889 IGSF3O75054 1194 aa5.8□□□□□ -1.48
CD44-226ENST00000527889 SEMA3FQ13275 785 aa5.8□□□□□ -1.48
CD44-226ENST00000527889 RNF19BQ6ZMZ0 732 aa5.8□□□□□ -1.48
CD44-226ENST00000527889 MYO3AQ8NEV4 1616 aa5.79□□□□□ -1.48
CD44-226ENST00000527889 ATP9BO43861 1147 aa5.79□□□□□ -1.48
CD44-226ENST00000527889 NR1I2O75469 434 aa5.79□□□□□ -1.48
CD44-226ENST00000527889 HSPA5P11021 654 aaKnown RBP5.79□□□□□ -1.48
CD44-226ENST00000527889 MYOM2P54296 1465 aa5.78□□□□□ -1.48
CD44-226ENST00000527889 PER1O15534 1290 aaPredicted RBP5.78□□□□□ -1.48
CD44-226ENST00000527889 GRIPAP1Q4V328 841 aa5.78□□□□□ -1.48
CD44-226ENST00000527889 BRICD5Q6PL45 260 aa5.78□□□□□ -1.48
CD44-226ENST00000527889 SYMPKQ92797 1274 aaKnown RBP5.78□□□□□ -1.48
CD44-226ENST00000527889 MYOM1P52179 1685 aa5.78□□□□□ -1.48
CD44-226ENST00000527889 ROCK2O75116 1388 aaKnown RBP5.78□□□□□ -1.48
CD44-226ENST00000527889 USP47Q96K76 1375 aa5.78□□□□□ -1.48
CD44-226ENST00000527889 NRXN3Q9Y4C0 1643 aa5.77□□□□□ -1.48
CD44-226ENST00000527889 TOM1O60784 492 aa5.77□□□□□ -1.49
CD44-226ENST00000527889 ADH1BP00325 375 aa5.77□□□□□ -1.49
CD44-226ENST00000527889 EIF4G2P78344 907 aaKnown RBP eCLIP5.77□□□□□ -1.49
CD44-226ENST00000527889 ELOAQ14241 798 aaKnown RBP5.77□□□□□ -1.49
CD44-226ENST00000527889 FAM160A2Q8N612 972 aaPredicted RBP5.77□□□□□ -1.49
CD44-226ENST00000527889 ZMIZ1Q9ULJ6 1067 aa5.77□□□□□ -1.49
CD44-226ENST00000527889 ZNF142P52746 1687 aaPredicted RBP5.77□□□□□ -1.49
CD44-226ENST00000527889 RGPD8O14715 1765 aaPredicted RBP5.77□□□□□ -1.49
CD44-226ENST00000527889 NRXN1Q9ULB1 1477 aa5.77□□□□□ -1.49
CD44-226ENST00000527889 CEP350Q5VT06 3117 aa5.76□□□□□ -1.49
CD44-226ENST00000527889 S1PR4O95977 384 aa5.76□□□□□ -1.49
CD44-226ENST00000527889 NR1H3Q13133 447 aa5.76□□□□□ -1.49
CD44-226ENST00000527889 NBPF1Q3BBV0 1214 aa5.76□□□□□ -1.49
CD44-226ENST00000527889 TMEM164Q5U3C3 297 aa5.76□□□□□ -1.49
CD44-226ENST00000527889 B4GALNT3Q6L9W6 998 aa5.76□□□□□ -1.49
CD44-226ENST00000527889 PPP1R18Q6NYC8 613 aa5.76□□□□□ -1.49
CD44-226ENST00000527889 PNMA1Q8ND90 353 aa5.76□□□□□ -1.49
CD44-226ENST00000527889 SPSB2Q99619 263 aa5.76□□□□□ -1.49
CD44-226ENST00000527889 CARD11Q9BXL7 1154 aa5.76□□□□□ -1.49
CD44-226ENST00000527889 ESF1Q9H501 851 aaKnown RBP5.76□□□□□ -1.49
CD44-226ENST00000527889 PRDM9Q9NQV7 894 aa5.76□□□□□ -1.49
CD44-226ENST00000527889 ZMYM3Q14202 1370 aa5.76□□□□□ -1.49
CD44-226ENST00000527889 KNDC1Q76NI1 1749 aa5.76□□□□□ -1.49
CD44-226ENST00000527889 ADGRF5Q8IZF2 1346 aa5.75□□□□□ -1.49
CD44-226ENST00000527889 PIK3CDO00329 1044 aa5.75□□□□□ -1.49
CD44-226ENST00000527889 DDX10Q13206 875 aaKnown RBP5.75□□□□□ -1.49
CD44-226ENST00000527889 IDI1Q13907 227 aa5.75□□□□□ -1.49
CD44-226ENST00000527889 DESI1Q6ICB0 168 aa5.75□□□□□ -1.49
CD44-226ENST00000527889 PHLDB3Q6NSJ2 640 aa5.75□□□□□ -1.49
CD44-226ENST00000527889 TXNDC2Q86VQ3 553 aa5.75□□□□□ -1.49
CD44-226ENST00000527889 STK32AQ8WU08 396 aa5.75□□□□□ -1.49
CD44-226ENST00000527889 SALL2Q9Y467 1007 aaPredicted RBP5.75□□□□□ -1.49
CD44-226ENST00000527889 GPRASP1Q5JY77 1395 aa5.75□□□□□ -1.49
CD44-226ENST00000527889 ASXL1Q8IXJ9 1541 aa5.74□□□□□ -1.49
CD44-226ENST00000527889 C11orf95C9JLR9 678 aaPredicted RBP5.74□□□□□ -1.49
CD44-226ENST00000527889 RNF223E7ERA6 249 aa5.74□□□□□ -1.49
CD44-226ENST00000527889 PPEF1O14829 653 aaPredicted RBP5.74□□□□□ -1.49
CD44-226ENST00000527889 FMNL1O95466 1100 aaPredicted RBP5.74□□□□□ -1.49
CD44-226ENST00000527889 FBXO45P0C2W1 286 aa5.74□□□□□ -1.49
CD44-226ENST00000527889 RETREG3Q86VR2 466 aa5.74□□□□□ -1.49
CD44-226ENST00000527889 NFATC2IPQ8NCF5 419 aa5.74□□□□□ -1.49
CD44-226ENST00000527889 EMID1Q96A84 441 aaPredicted RBP5.74□□□□□ -1.49
CD44-226ENST00000527889 EIF4ENIF1Q9NRA8 985 aaKnown RBP5.74□□□□□ -1.49
CD44-226ENST00000527889 CCDC7Q96M83 1385 aa5.74□□□□□ -1.49
CD44-226ENST00000527889 A2ML1A8K2U0 1454 aa5.74□□□□□ -1.49
CD44-226ENST00000527889 ADGRB1O14514 1584 aa5.74□□□□□ -1.49
CD44-226ENST00000527889 CHD2O14647 1828 aaKnown RBP5.74□□□□□ -1.49
CD44-226ENST00000527889 ALKQ9UM73 1620 aa5.74□□□□□ -1.49
CD44-226ENST00000527889 PIK3C2GO75747 1445 aa5.74□□□□□ -1.49
CD44-226ENST00000527889 WASHC2AQ641Q2 1341 aa5.74□□□□□ -1.49
CD44-226ENST00000527889 TNRQ92752 1358 aa5.73□□□□□ -1.49
CD44-226ENST00000527889 USP17L3A6NCW0 530 aa5.73□□□□□ -1.49
CD44-226ENST00000527889 USP17L4A6NCW7 530 aa5.73□□□□□ -1.49
CD44-226ENST00000527889 UNCXA6NJT0 531 aa5.73□□□□□ -1.49
CD44-226ENST00000527889 CEBPAP49715 358 aaPredicted RBP5.73□□□□□ -1.49
CD44-226ENST00000527889 Q3C1V9 767 aa5.73□□□□□ -1.49
CD44-226ENST00000527889 USP17L2Q6R6M4 530 aa5.73□□□□□ -1.49
CD44-226ENST00000527889 LYPD8Q6UX82 237 aa5.73□□□□□ -1.49
CD44-226ENST00000527889 USP17L1Q7RTZ2 530 aa5.73□□□□□ -1.49
CD44-226ENST00000527889 SLC6A16Q9GZN6 736 aa5.73□□□□□ -1.49
CD44-226ENST00000527889 SLC52A1Q9NWF4 448 aa5.73□□□□□ -1.49
CD44-226ENST00000527889 NOVA2Q9UNW9 492 aaKnown RBP5.73□□□□□ -1.49
CD44-226ENST00000527889 CEP170BQ9Y4F5 1589 aaPredicted RBP5.72□□□□□ -1.49
CD44-226ENST00000527889 SCAF11Q99590 1463 aaKnown RBP5.72□□□□□ -1.49
CD44-226ENST00000527889 KIF20BQ96Q89 1820 aa5.72□□□□□ -1.49
CD44-226ENST00000527889 ITSN1Q15811 1721 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 154.1 ms