RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 ZEB1P37275 1124 aaPredicted RBP12.41□□□□□ -0.42
HDAC3-215ENST00000519474 EIF5P55010 431 aaKnown RBP12.41□□□□□ -0.42
HDAC3-215ENST00000519474 USPL1Q5W0Q7 1092 aa12.41□□□□□ -0.42
HDAC3-215ENST00000519474 PNNQ9H307 717 aaKnown RBP12.41□□□□□ -0.42
HDAC3-215ENST00000519474 BCL2L12Q9HB09 334 aa12.41□□□□□ -0.42
HDAC3-215ENST00000519474 MIS18AQ9NYP9 233 aa12.41□□□□□ -0.42
HDAC3-215ENST00000519474 PARP3Q9Y6F1 533 aa12.41□□□□□ -0.42
HDAC3-215ENST00000519474 VIRMAQ69YN4 1812 aaKnown RBP12.41□□□□□ -0.42
HDAC3-215ENST00000519474 PRAMEF22A3QJZ6 481 aa12.4□□□□□ -0.42
HDAC3-215ENST00000519474 GRIN3BO60391 1043 aa12.4□□□□□ -0.42
HDAC3-215ENST00000519474 ZPR1O75312 459 aa12.4□□□□□ -0.42
HDAC3-215ENST00000519474 TGFB2P61812 414 aa12.4□□□□□ -0.42
HDAC3-215ENST00000519474 NFE2L2Q16236 605 aa12.4□□□□□ -0.42
HDAC3-215ENST00000519474 NARFQ9UHQ1 456 aa12.4□□□□□ -0.42
HDAC3-215ENST00000519474 TJP1Q07157 1748 aa12.4□□□□□ -0.43
HDAC3-215ENST00000519474 A0A0G2JLW4 131 aa12.39□□□□□ -0.43
HDAC3-215ENST00000519474 NEFMP07197 916 aa12.39□□□□□ -0.43
HDAC3-215ENST00000519474 DDR1Q08345 913 aa12.39□□□□□ -0.43
HDAC3-215ENST00000519474 PRKRIP1Q9H875 184 aaPredicted RBP12.39□□□□□ -0.43
HDAC3-215ENST00000519474 MYBBP1AQ9BQG0 1328 aaKnown RBP12.38□□□□□ -0.43
HDAC3-215ENST00000519474 POLRMTO00411 1230 aaKnown RBP12.38□□□□□ -0.43
HDAC3-215ENST00000519474 SNRPA1P09661 255 aaKnown RBP12.38□□□□□ -0.43
HDAC3-215ENST00000519474 KCNA3P22001 575 aa12.38□□□□□ -0.43
HDAC3-215ENST00000519474 THUMPD2Q9BTF0 503 aaKnown RBP12.38□□□□□ -0.43
HDAC3-215ENST00000519474 NFIXQ14938 502 aa12.37□□□□□ -0.43
HDAC3-215ENST00000519474 WWC3Q9ULE0 1092 aa12.37□□□□□ -0.43
HDAC3-215ENST00000519474 ADAMTS8Q9UP79 889 aa12.37□□□□□ -0.43
HDAC3-215ENST00000519474 TBC1D2BQ9UPU7 963 aa12.37□□□□□ -0.43
HDAC3-215ENST00000519474 CICQ96RK0 1608 aaPredicted RBP12.37□□□□□ -0.43
HDAC3-215ENST00000519474 A0A087WZG4 1122 aa12.36□□□□□ -0.43
HDAC3-215ENST00000519474 DPEP1P16444 411 aa12.36□□□□□ -0.43
HDAC3-215ENST00000519474 IL6STP40189 918 aaPredicted RBP12.36□□□□□ -0.43
HDAC3-215ENST00000519474 TMPOP42166 694 aaKnown RBP12.36□□□□□ -0.43
HDAC3-215ENST00000519474 RIPK4P57078 832 aa12.36□□□□□ -0.43
HDAC3-215ENST00000519474 ZNF784Q8NCA9 323 aaPredicted RBP12.36□□□□□ -0.43
HDAC3-215ENST00000519474 SIPA1L3O60292 1781 aaPredicted RBP12.35□□□□□ -0.43
HDAC3-215ENST00000519474 COL15A1P39059 1388 aa12.35□□□□□ -0.43
HDAC3-215ENST00000519474 SERPINB2P05120 415 aa12.35□□□□□ -0.43
HDAC3-215ENST00000519474 PIP4K2AP48426 406 aaPredicted RBP12.35□□□□□ -0.43
HDAC3-215ENST00000519474 EIF4A1P60842 406 aaKnown RBP12.35□□□□□ -0.43
HDAC3-215ENST00000519474 PNISRQ8TF01 805 aaKnown RBP12.35□□□□□ -0.43
HDAC3-215ENST00000519474 UBR2Q8IWV8 1755 aa12.34□□□□□ -0.43
HDAC3-215ENST00000519474 NBPF26B4DH59 902 aa12.34□□□□□ -0.43
HDAC3-215ENST00000519474 TBC1D9BQ66K14 1250 aa12.34□□□□□ -0.43
HDAC3-215ENST00000519474 NBPF10Q6P3W6 841 aaKnown RBP12.34□□□□□ -0.43
HDAC3-215ENST00000519474 CCDC146Q8IYE0 955 aa12.34□□□□□ -0.43
HDAC3-215ENST00000519474 NBPF15Q8N660 670 aa12.34□□□□□ -0.43
HDAC3-215ENST00000519474 MAPK8IP3Q9UPT6 1336 aa12.34□□□□□ -0.43
HDAC3-215ENST00000519474 GIGYF1O75420 1035 aaPredicted RBP12.33□□□□□ -0.44
HDAC3-215ENST00000519474 CAMTA2O94983 1202 aa12.33□□□□□ -0.44
HDAC3-215ENST00000519474 BICDL1Q6ZP65 573 aa12.33□□□□□ -0.44
HDAC3-215ENST00000519474 ZNF330Q9Y3S2 320 aaPredicted RBP12.33□□□□□ -0.44
HDAC3-215ENST00000519474 C4AP0C0L4 1744 aa12.32□□□□□ -0.44
HDAC3-215ENST00000519474 ZNF316A6NFI3 1004 aaPredicted RBP12.32□□□□□ -0.44
HDAC3-215ENST00000519474 CHRNA5P30532 468 aa12.32□□□□□ -0.44
HDAC3-215ENST00000519474 NEUROD2Q15784 382 aa12.32□□□□□ -0.44
HDAC3-215ENST00000519474 RUNDC1Q96C34 613 aa12.32□□□□□ -0.44
HDAC3-215ENST00000519474 BCS1LQ9Y276 419 aa12.32□□□□□ -0.44
HDAC3-215ENST00000519474 RRP7AQ9Y3A4 280 aaKnown RBP12.32□□□□□ -0.44
HDAC3-215ENST00000519474 CHD4Q14839 1912 aa12.31□□□□□ -0.44
HDAC3-215ENST00000519474 C10orf71Q711Q0 1435 aa12.31□□□□□ -0.44
HDAC3-215ENST00000519474 CCDC184Q52MB2 194 aa12.31□□□□□ -0.44
HDAC3-215ENST00000519474 DZIP3Q86Y13 1208 aaKnown RBP12.31□□□□□ -0.44
HDAC3-215ENST00000519474 PIM2Q9P1W9 311 aa12.31□□□□□ -0.44
HDAC3-215ENST00000519474 TRIM35Q9UPQ4 493 aa12.31□□□□□ -0.44
HDAC3-215ENST00000519474 PXDNLA1KZ92 1463 aa12.31□□□□□ -0.44
HDAC3-215ENST00000519474 WDR43Q15061 677 aaKnown RBP eCLIP12.3□□□□□ -0.44
HDAC3-215ENST00000519474 NPM2Q86SE8 214 aaKnown RBP12.3□□□□□ -0.44
HDAC3-215ENST00000519474 DLG5Q8TDM6 1919 aa12.3□□□□□ -0.44
HDAC3-215ENST00000519474 CHL1O00533 1208 aa12.29□□□□□ -0.44
HDAC3-215ENST00000519474 CLEC4GQ6UXB4 293 aa12.29□□□□□ -0.44
HDAC3-215ENST00000519474 ARHGAP27Q6ZUM4 889 aa12.29□□□□□ -0.44
HDAC3-215ENST00000519474 CCDC24Q8N4L8 307 aa12.29□□□□□ -0.44
HDAC3-215ENST00000519474 BABAM1Q9NWV8 329 aa12.29□□□□□ -0.44
HDAC3-215ENST00000519474 KIF13BQ9NQT8 1826 aa12.29□□□□□ -0.44
HDAC3-215ENST00000519474 N4BP2Q86UW6 1770 aaPredicted RBP12.28□□□□□ -0.44
HDAC3-215ENST00000519474 HLFQ16534 295 aa12.28□□□□□ -0.44
HDAC3-215ENST00000519474 NGEFQ8N5V2 710 aa12.28□□□□□ -0.44
HDAC3-215ENST00000519474 SETDB2Q96T68 719 aa12.28□□□□□ -0.44
HDAC3-215ENST00000519474 TSPYL4Q9UJ04 414 aa12.28□□□□□ -0.44
HDAC3-215ENST00000519474 APAF1O14727 1248 aa12.27□□□□□ -0.45
HDAC3-215ENST00000519474 LMOD3Q0VAK6 560 aa12.27□□□□□ -0.45
HDAC3-215ENST00000519474 DALRD3Q5D0E6 543 aaKnown RBP12.27□□□□□ -0.45
HDAC3-215ENST00000519474 PRR5LQ6MZQ0 368 aa12.27□□□□□ -0.45
HDAC3-215ENST00000519474 KIAA1551Q9HCM1 1747 aa12.27□□□□□ -0.45
HDAC3-215ENST00000519474 PDIA6Q15084 440 aa12.26□□□□□ -0.45
HDAC3-215ENST00000519474 TTLL7Q6ZT98 887 aa12.26□□□□□ -0.45
HDAC3-215ENST00000519474 BRIP1Q9BX63 1249 aa12.26□□□□□ -0.45
HDAC3-215ENST00000519474 ERVV-1B6SEH8 477 aa12.25□□□□□ -0.45
HDAC3-215ENST00000519474 H0YIN7 160 aa12.25□□□□□ -0.45
HDAC3-215ENST00000519474 RGL2O15211 777 aa12.25□□□□□ -0.45
HDAC3-215ENST00000519474 EIF2S2P20042 333 aaKnown RBP12.25□□□□□ -0.45
HDAC3-215ENST00000519474 LRP10Q7Z4F1 713 aa12.25□□□□□ -0.45
HDAC3-215ENST00000519474 C2CD5Q86YS7 1000 aa12.25□□□□□ -0.45
HDAC3-215ENST00000519474 LAS1LQ9Y4W2 734 aaKnown RBP12.25□□□□□ -0.45
HDAC3-215ENST00000519474 AFDNP55196 1824 aaKnown RBP12.25□□□□□ -0.45
HDAC3-215ENST00000519474 MYL6BP14649 208 aa12.24□□□□□ -0.45
HDAC3-215ENST00000519474 KRT24Q2M2I5 525 aa12.24□□□□□ -0.45
HDAC3-215ENST00000519474 TTLL6Q8N841 843 aa12.24□□□□□ -0.45
HDAC3-215ENST00000519474 CARMIL3Q8ND23 1372 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms