RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 UPF3BQ9BZI7 483 aaKnown RBP15.45■□□□□ 0.06
TCOF1-213ENST00000514442 ZMYM3Q14202 1370 aa15.45■□□□□ 0.06
TCOF1-213ENST00000514442 FMNL2Q96PY5 1086 aa15.45■□□□□ 0.06
TCOF1-213ENST00000514442 PCDHB15Q9Y5E8 787 aa15.45■□□□□ 0.06
TCOF1-213ENST00000514442 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.45■□□□□ 0.06
TCOF1-213ENST00000514442 A0A1W2PP64 1363 aa15.44■□□□□ 0.06
TCOF1-213ENST00000514442 ATP5J2-PTCD1G3V325 749 aa15.44■□□□□ 0.06
TCOF1-213ENST00000514442 TSHZ3Q63HK5 1081 aa15.44■□□□□ 0.06
TCOF1-213ENST00000514442 CADPS2Q86UW7 1296 aa15.44■□□□□ 0.06
TCOF1-213ENST00000514442 PTPRCP08575 1304 aa15.44■□□□□ 0.06
TCOF1-213ENST00000514442 PI4KAP2A4QPH2 592 aa15.44■□□□□ 0.06
TCOF1-213ENST00000514442 GPTP24298 496 aa15.44■□□□□ 0.06
TCOF1-213ENST00000514442 BMP2KLQ5H9B9 411 aa15.44■□□□□ 0.06
TCOF1-213ENST00000514442 IFNL2Q8IZJ0 200 aa15.44■□□□□ 0.06
TCOF1-213ENST00000514442 PI4KAP1Q8N8J0 262 aa15.44■□□□□ 0.06
TCOF1-213ENST00000514442 RAI14Q9P0K7 980 aa15.44■□□□□ 0.06
TCOF1-213ENST00000514442 TNNQ9UQP3 1299 aa15.44■□□□□ 0.06
TCOF1-213ENST00000514442 NACAP1Q9BZK3 213 aa15.44■□□□□ 0.06
TCOF1-213ENST00000514442 RBSNQ9H1K0 784 aa15.44■□□□□ 0.06
TCOF1-213ENST00000514442 TTC21AQ8NDW8 1320 aa15.43■□□□□ 0.06
TCOF1-213ENST00000514442 A0A087WZG4 1122 aa15.43■□□□□ 0.06
TCOF1-213ENST00000514442 CASTP20810 708 aaKnown RBP15.43■□□□□ 0.06
TCOF1-213ENST00000514442 IGHMBP2P38935 993 aaKnown RBP15.43■□□□□ 0.06
TCOF1-213ENST00000514442 CABLES1Q8TDN4 633 aa15.43■□□□□ 0.06
TCOF1-213ENST00000514442 LRRC59Q96AG4 307 aaKnown RBP15.43■□□□□ 0.06
TCOF1-213ENST00000514442 HYPKQ9NX55 129 aa15.43■□□□□ 0.06
TCOF1-213ENST00000514442 RAB11FIP3O75154 756 aa15.43■□□□□ 0.06
TCOF1-213ENST00000514442 ATP2B2Q01814 1243 aa15.43■□□□□ 0.06
TCOF1-213ENST00000514442 NUP133Q8WUM0 1156 aa15.43■□□□□ 0.06
TCOF1-213ENST00000514442 NAT10Q9H0A0 1025 aaKnown RBP15.43■□□□□ 0.06
TCOF1-213ENST00000514442 ATP7AQ04656 1500 aa15.43■□□□□ 0.06
TCOF1-213ENST00000514442 SLC3A2P08195 630 aaKnown RBP15.43■□□□□ 0.06
TCOF1-213ENST00000514442 ZNF445P59923 1031 aa15.43■□□□□ 0.06
TCOF1-213ENST00000514442 C8orf58Q8NAV2 365 aa15.43■□□□□ 0.06
TCOF1-213ENST00000514442 IL16Q14005 1332 aa15.43■□□□□ 0.06
TCOF1-213ENST00000514442 ABCC1P33527 1531 aa15.43■□□□□ 0.06
TCOF1-213ENST00000514442 ARHGEF12Q9NZN5 1544 aa15.43■□□□□ 0.06
TCOF1-213ENST00000514442 GLRX3O76003 335 aaKnown RBP15.43■□□□□ 0.06
TCOF1-213ENST00000514442 C16orf45Q96MC5 204 aaPredicted RBP15.43■□□□□ 0.06
TCOF1-213ENST00000514442 PAXBP1Q9Y5B6 917 aa15.43■□□□□ 0.06
TCOF1-213ENST00000514442 MAST1Q9Y2H9 1570 aa15.42■□□□□ 0.06
TCOF1-213ENST00000514442 ABCF2Q9UG63 623 aa15.42■□□□□ 0.06
TCOF1-213ENST00000514442 GTF2F1P35269 517 aaKnown RBP eCLIP15.42■□□□□ 0.06
TCOF1-213ENST00000514442 PTPN14Q15678 1187 aa15.42■□□□□ 0.06
TCOF1-213ENST00000514442 LARP1BQ659C4 914 aaKnown RBP15.42■□□□□ 0.06
TCOF1-213ENST00000514442 PRPF40BQ6NWY9 871 aaKnown RBP15.42■□□□□ 0.06
TCOF1-213ENST00000514442 LRP2BPQ9P2M1 347 aa15.42■□□□□ 0.06
TCOF1-213ENST00000514442 TNMDQ9H2S6 317 aa15.42■□□□□ 0.06
TCOF1-213ENST00000514442 VGLL3A8MV65 326 aa15.42■□□□□ 0.06
TCOF1-213ENST00000514442 KIF2AO00139 706 aaPredicted RBP15.42■□□□□ 0.06
TCOF1-213ENST00000514442 TDO2P48775 406 aa15.42■□□□□ 0.06
TCOF1-213ENST00000514442 STK38Q15208 465 aa15.42■□□□□ 0.06
TCOF1-213ENST00000514442 ANKRD1Q15327 319 aa15.42■□□□□ 0.06
TCOF1-213ENST00000514442 TMCO3Q6UWJ1 677 aa15.42■□□□□ 0.06
TCOF1-213ENST00000514442 ANKRD20A12PQ8NF67 263 aa15.42■□□□□ 0.06
TCOF1-213ENST00000514442 ZSCAN25Q6NSZ9 544 aa15.41■□□□□ 0.06
TCOF1-213ENST00000514442 ADGRL2O95490 1459 aa15.41■□□□□ 0.06
TCOF1-213ENST00000514442 KCNA6P17658 529 aa15.41■□□□□ 0.06
TCOF1-213ENST00000514442 HSPA2P54652 639 aa15.41■□□□□ 0.06
TCOF1-213ENST00000514442 SLC39A6Q13433 755 aa15.41■□□□□ 0.06
TCOF1-213ENST00000514442 TBC1D9Q6ZT07 1266 aa15.41■□□□□ 0.06
TCOF1-213ENST00000514442 EXOC5O00471 708 aa15.41■□□□□ 0.06
TCOF1-213ENST00000514442 NGLY1Q96IV0 654 aa15.41■□□□□ 0.06
TCOF1-213ENST00000514442 TRMT112Q9UI30 125 aaKnown RBP15.41■□□□□ 0.06
TCOF1-213ENST00000514442 YTHDC2Q9H6S0 1430 aaKnown RBP15.41■□□□□ 0.06
TCOF1-213ENST00000514442 KINO60870 393 aaKnown RBP15.4■□□□□ 0.06
TCOF1-213ENST00000514442 GABPB1Q06547 395 aaPredicted RBP15.4■□□□□ 0.06
TCOF1-213ENST00000514442 POLR3AO14802 1390 aaPredicted RBP15.4■□□□□ 0.06
TCOF1-213ENST00000514442 PLEKHH1Q9ULM0 1364 aa15.4■□□□□ 0.06
TCOF1-213ENST00000514442 CCDC69A6NI79 296 aa15.4■□□□□ 0.06
TCOF1-213ENST00000514442 PER1O15534 1290 aaPredicted RBP15.4■□□□□ 0.06
TCOF1-213ENST00000514442 HDAC1Q13547 482 aaPredicted RBP15.4■□□□□ 0.06
TCOF1-213ENST00000514442 CHPF2Q9P2E5 772 aa15.4■□□□□ 0.06
TCOF1-213ENST00000514442 TARBP1Q13395 1621 aaKnown RBP15.4■□□□□ 0.06
TCOF1-213ENST00000514442 MTHFSDQ2M296 383 aaKnown RBP15.4■□□□□ 0.06
TCOF1-213ENST00000514442 KRT24Q2M2I5 525 aa15.4■□□□□ 0.06
TCOF1-213ENST00000514442 PHACTR3Q96KR7 559 aa15.4■□□□□ 0.06
TCOF1-213ENST00000514442 ANTXR1Q9H6X2 564 aa15.4■□□□□ 0.06
TCOF1-213ENST00000514442 DHX8Q14562 1220 aaKnown RBP15.4■□□□□ 0.06
TCOF1-213ENST00000514442 BMS1Q14692 1282 aaKnown RBP15.4■□□□□ 0.06
TCOF1-213ENST00000514442 MEIS3Q99687 375 aa15.4■□□□□ 0.06
TCOF1-213ENST00000514442 NPATQ14207 1427 aa15.4■□□□□ 0.06
TCOF1-213ENST00000514442 MSH6P52701 1360 aa15.39■□□□□ 0.05
TCOF1-213ENST00000514442 PIP4K2AP48426 406 aaPredicted RBP15.39■□□□□ 0.05
TCOF1-213ENST00000514442 PPP1R42Q7Z4L9 355 aa15.39■□□□□ 0.05
TCOF1-213ENST00000514442 DDX11Q96FC9 970 aa15.39■□□□□ 0.05
TCOF1-213ENST00000514442 NUP62CLQ9H1M0 184 aa15.39■□□□□ 0.05
TCOF1-213ENST00000514442 TTC12Q9H892 705 aaPredicted RBP15.39■□□□□ 0.05
TCOF1-213ENST00000514442 IFIT1P09914 478 aaKnown RBP15.39■□□□□ 0.05
TCOF1-213ENST00000514442 GAS2L3Q86XJ1 694 aa15.39■□□□□ 0.05
TCOF1-213ENST00000514442 KIF18AQ8NI77 898 aa15.39■□□□□ 0.05
TCOF1-213ENST00000514442 CCDC43Q96MW1 224 aaKnown RBP15.39■□□□□ 0.05
TCOF1-213ENST00000514442 ZMYM4Q5VZL5 1548 aa15.39■□□□□ 0.05
TCOF1-213ENST00000514442 UHRF1BP1Q6BDS2 1440 aa15.39■□□□□ 0.05
TCOF1-213ENST00000514442 PIK3R4Q99570 1358 aa15.39■□□□□ 0.05
TCOF1-213ENST00000514442 UBE3BQ7Z3V4 1068 aa15.39■□□□□ 0.05
TCOF1-213ENST00000514442 IFIT5Q13325 482 aaKnown RBP15.38■□□□□ 0.05
TCOF1-213ENST00000514442 AIDAQ96BJ3 306 aa15.38■□□□□ 0.05
TCOF1-213ENST00000514442 ZNF396Q96N95 335 aaPredicted RBP15.38■□□□□ 0.05
TCOF1-213ENST00000514442 CEP89Q96ST8 783 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 104.2 ms