RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 PSDA5PKW4 1024 aaPredicted RBP12.79□□□□□ -0.36
TOPBP1-209ENST00000513818 ABCB7O75027 752 aa12.79□□□□□ -0.36
TOPBP1-209ENST00000513818 AMIGO3Q86WK7 504 aa12.79□□□□□ -0.36
TOPBP1-209ENST00000513818 FMNL2Q96PY5 1086 aa12.79□□□□□ -0.36
TOPBP1-209ENST00000513818 MBIPQ9NS73 344 aa12.79□□□□□ -0.36
TOPBP1-209ENST00000513818 MYH14Q7Z406 1995 aaKnown RBP12.79□□□□□ -0.36
TOPBP1-209ENST00000513818 ZNF521Q96K83 1311 aa12.79□□□□□ -0.36
TOPBP1-209ENST00000513818 UBR3Q6ZT12 1888 aa12.78□□□□□ -0.36
TOPBP1-209ENST00000513818 EIF4A1P60842 406 aaKnown RBP12.78□□□□□ -0.36
TOPBP1-209ENST00000513818 R3HDM1Q15032 1099 aaKnown RBP12.78□□□□□ -0.36
TOPBP1-209ENST00000513818 CFAP44Q96MT7 982 aa12.78□□□□□ -0.36
TOPBP1-209ENST00000513818 IFT57Q9NWB7 429 aa12.78□□□□□ -0.36
TOPBP1-209ENST00000513818 CHL1O00533 1208 aa12.77□□□□□ -0.37
TOPBP1-209ENST00000513818 ZNF853P0CG23 659 aa12.77□□□□□ -0.37
TOPBP1-209ENST00000513818 PIP4K2AP48426 406 aaPredicted RBP12.77□□□□□ -0.37
TOPBP1-209ENST00000513818 FANCIQ9NVI1 1328 aa12.77□□□□□ -0.37
TOPBP1-209ENST00000513818 GNPATO15228 680 aa12.76□□□□□ -0.37
TOPBP1-209ENST00000513818 PHF14O94880 888 aa12.76□□□□□ -0.37
TOPBP1-209ENST00000513818 GNAI1P63096 354 aa12.76□□□□□ -0.37
TOPBP1-209ENST00000513818 CALD1Q05682 793 aaKnown RBP12.76□□□□□ -0.37
TOPBP1-209ENST00000513818 NECTIN2Q92692 538 aa12.76□□□□□ -0.37
TOPBP1-209ENST00000513818 AKT1S1Q96B36 256 aa12.76□□□□□ -0.37
TOPBP1-209ENST00000513818 AK7Q96M32 723 aa12.76□□□□□ -0.37
TOPBP1-209ENST00000513818 PDGFDQ9GZP0 370 aaPredicted RBP12.76□□□□□ -0.37
TOPBP1-209ENST00000513818 STK32BQ9NY57 414 aa12.76□□□□□ -0.37
TOPBP1-209ENST00000513818 C4AP0C0L4 1744 aa12.76□□□□□ -0.37
TOPBP1-209ENST00000513818 CASZ1Q86V15 1759 aa12.76□□□□□ -0.37
TOPBP1-209ENST00000513818 ATXN8OSP0DMR3 200 aa12.75□□□□□ -0.37
TOPBP1-209ENST00000513818 CYP19A1P11511 503 aaPredicted RBP12.75□□□□□ -0.37
TOPBP1-209ENST00000513818 CRKLP46109 303 aaKnown RBP12.75□□□□□ -0.37
TOPBP1-209ENST00000513818 SLC15A2Q16348 729 aa12.75□□□□□ -0.37
TOPBP1-209ENST00000513818 QSER1Q2KHR3 1735 aa12.75□□□□□ -0.37
TOPBP1-209ENST00000513818 TPRNQ4KMQ1 711 aa12.75□□□□□ -0.37
TOPBP1-209ENST00000513818 WDR63Q8IWG1 891 aa12.75□□□□□ -0.37
TOPBP1-209ENST00000513818 CDCA7LQ96GN5 454 aa12.75□□□□□ -0.37
TOPBP1-209ENST00000513818 YTHDC1Q96MU7 727 aaKnown RBP12.75□□□□□ -0.37
TOPBP1-209ENST00000513818 ZBTB1Q9Y2K1 713 aa12.75□□□□□ -0.37
TOPBP1-209ENST00000513818 USP16Q9Y5T5 823 aa12.75□□□□□ -0.37
TOPBP1-209ENST00000513818 IL16Q14005 1332 aa12.74□□□□□ -0.37
TOPBP1-209ENST00000513818 CNTNAP4Q9C0A0 1308 aa12.74□□□□□ -0.37
TOPBP1-209ENST00000513818 ELL2O00472 640 aaPredicted RBP12.74□□□□□ -0.37
TOPBP1-209ENST00000513818 GIGYF1O75420 1035 aaPredicted RBP12.74□□□□□ -0.37
TOPBP1-209ENST00000513818 SNRPA1P09661 255 aaKnown RBP12.74□□□□□ -0.37
TOPBP1-209ENST00000513818 NBPF14Q5TI25 921 aa12.74□□□□□ -0.37
TOPBP1-209ENST00000513818 VSIG10Q8N0Z9 540 aa12.74□□□□□ -0.37
TOPBP1-209ENST00000513818 PNPLA7Q6ZV29 1317 aa12.73□□□□□ -0.37
TOPBP1-209ENST00000513818 A1BGP04217 495 aa12.73□□□□□ -0.37
TOPBP1-209ENST00000513818 CANXP27824 592 aaKnown RBP12.73□□□□□ -0.37
TOPBP1-209ENST00000513818 INTS5Q6P9B9 1019 aaKnown RBP12.73□□□□□ -0.37
TOPBP1-209ENST00000513818 TSPYL6Q8N831 410 aa12.73□□□□□ -0.37
TOPBP1-209ENST00000513818 C8orf58Q8NAV2 365 aa12.73□□□□□ -0.37
TOPBP1-209ENST00000513818 BABAM1Q9NWV8 329 aa12.73□□□□□ -0.37
TOPBP1-209ENST00000513818 TFCP2L1Q9NZI6 479 aa12.73□□□□□ -0.37
TOPBP1-209ENST00000513818 ATF5Q9Y2D1 282 aaPredicted RBP12.73□□□□□ -0.37
TOPBP1-209ENST00000513818 ZNF330Q9Y3S2 320 aaPredicted RBP12.73□□□□□ -0.37
TOPBP1-209ENST00000513818 EIF2S2P20042 333 aaKnown RBP12.72□□□□□ -0.37
TOPBP1-209ENST00000513818 GOLGA2Q08379 1002 aa12.72□□□□□ -0.37
TOPBP1-209ENST00000513818 NGEFQ8N5V2 710 aa12.72□□□□□ -0.37
TOPBP1-209ENST00000513818 CCDC87Q9NVE4 849 aa12.72□□□□□ -0.37
TOPBP1-209ENST00000513818 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.71□□□□□ -0.37
TOPBP1-209ENST00000513818 STARD3NLO95772 234 aa12.71□□□□□ -0.37
TOPBP1-209ENST00000513818 ANXA1P04083 346 aa12.71□□□□□ -0.37
TOPBP1-209ENST00000513818 EXOSC9Q06265 439 aaKnown RBP12.71□□□□□ -0.37
TOPBP1-209ENST00000513818 DUSP27Q5VZP5 1158 aa12.71□□□□□ -0.37
TOPBP1-209ENST00000513818 SOS1Q07889 1333 aaPredicted RBP12.7□□□□□ -0.38
TOPBP1-209ENST00000513818 NBPF26B4DH59 902 aa12.7□□□□□ -0.38
TOPBP1-209ENST00000513818 TCERG1O14776 1098 aaKnown RBP12.7□□□□□ -0.38
TOPBP1-209ENST00000513818 PROSER3Q2NL68 480 aa12.7□□□□□ -0.38
TOPBP1-209ENST00000513818 NBPF10Q6P3W6 841 aaKnown RBP12.7□□□□□ -0.38
TOPBP1-209ENST00000513818 COL23A1Q86Y22 540 aaPredicted RBP12.7□□□□□ -0.38
TOPBP1-209ENST00000513818 NBPF15Q8N660 670 aa12.7□□□□□ -0.38
TOPBP1-209ENST00000513818 RTCBQ9Y3I0 505 aaKnown RBP12.7□□□□□ -0.38
TOPBP1-209ENST00000513818 SCN7AQ01118 1682 aa12.7□□□□□ -0.38
TOPBP1-209ENST00000513818 COL15A1P39059 1388 aa12.69□□□□□ -0.38
TOPBP1-209ENST00000513818 ZBED9Q6R2W3 1325 aa12.69□□□□□ -0.38
TOPBP1-209ENST00000513818 MYL6BP14649 208 aa12.69□□□□□ -0.38
TOPBP1-209ENST00000513818 SLFN5Q08AF3 891 aa12.69□□□□□ -0.38
TOPBP1-209ENST00000513818 RC3H1Q5TC82 1133 aaKnown RBP12.69□□□□□ -0.38
TOPBP1-209ENST00000513818 HDGFL1Q5TGJ6 251 aa12.69□□□□□ -0.38
TOPBP1-209ENST00000513818 MYH16Q9H6N6 1097 aa12.69□□□□□ -0.38
TOPBP1-209ENST00000513818 SRP68Q9UHB9 627 aaKnown RBP12.69□□□□□ -0.38
TOPBP1-209ENST00000513818 BCORQ6W2J9 1755 aa12.69□□□□□ -0.38
TOPBP1-209ENST00000513818 E9PSI1 815 aa12.68□□□□□ -0.38
TOPBP1-209ENST00000513818 RPS6KA4O75676 772 aa12.68□□□□□ -0.38
TOPBP1-209ENST00000513818 ZBTB7AO95365 584 aa12.68□□□□□ -0.38
TOPBP1-209ENST00000513818 TWISTNBQ3B726 338 aaPredicted RBP12.68□□□□□ -0.38
TOPBP1-209ENST00000513818 MSL1Q68DK7 614 aa12.68□□□□□ -0.38
TOPBP1-209ENST00000513818 TEX13AQ9BXU3 409 aaPredicted RBP12.68□□□□□ -0.38
TOPBP1-209ENST00000513818 CHPF2Q9P2E5 772 aa12.68□□□□□ -0.38
TOPBP1-209ENST00000513818 SSFA2P28290 1259 aa12.67□□□□□ -0.38
TOPBP1-209ENST00000513818 ARHGEF1Q92888 912 aaKnown RBP12.67□□□□□ -0.38
TOPBP1-209ENST00000513818 ARXQ96QS3 562 aa12.67□□□□□ -0.38
TOPBP1-209ENST00000513818 EIF5P55010 431 aaKnown RBP12.66□□□□□ -0.38
TOPBP1-209ENST00000513818 HOXB7P09629 217 aa12.65□□□□□ -0.38
TOPBP1-209ENST00000513818 IL6STP40189 918 aaPredicted RBP12.65□□□□□ -0.38
TOPBP1-209ENST00000513818 PDIA6Q15084 440 aa12.65□□□□□ -0.38
TOPBP1-209ENST00000513818 TRAPPC3LQ5T215 181 aa12.65□□□□□ -0.38
TOPBP1-209ENST00000513818 TBC1D2BQ9UPU7 963 aa12.65□□□□□ -0.38
TOPBP1-209ENST00000513818 USP42Q9H9J4 1324 aaKnown RBP12.64□□□□□ -0.39
TOPBP1-209ENST00000513818 SRCAPQ6ZRS2 3230 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms