RNA–Protein interactions for RNA: ENST00000511421.5

SH3RF1-205, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 1,657 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-205ENST00000511421 C4AP0C0L4 1744 aa15.37■□□□□ 0.05
SH3RF1-205ENST00000511421 CANXP27824 592 aaKnown RBP15.35■□□□□ 0.05
SH3RF1-205ENST00000511421 FKBP8Q14318 412 aa15.35■□□□□ 0.05
SH3RF1-205ENST00000511421 THUMPD2Q9BTF0 503 aaKnown RBP15.35■□□□□ 0.05
SH3RF1-205ENST00000511421 MIS18AQ9NYP9 233 aa15.35■□□□□ 0.05
SH3RF1-205ENST00000511421 DLG5Q8TDM6 1919 aa15.35■□□□□ 0.05
SH3RF1-205ENST00000511421 TMPOP42166 694 aaKnown RBP15.35■□□□□ 0.05
SH3RF1-205ENST00000511421 EIF5P55010 431 aaKnown RBP15.35■□□□□ 0.05
SH3RF1-205ENST00000511421 ADAMTS8Q9UP79 889 aa15.35■□□□□ 0.05
SH3RF1-205ENST00000511421 COL15A1P39059 1388 aa15.34■□□□□ 0.05
SH3RF1-205ENST00000511421 PRAMEF22A3QJZ6 481 aa15.34■□□□□ 0.05
SH3RF1-205ENST00000511421 RIPK4P57078 832 aa15.34■□□□□ 0.05
SH3RF1-205ENST00000511421 WDR43Q15061 677 aaKnown RBP eCLIP15.34■□□□□ 0.05
SH3RF1-205ENST00000511421 USPL1Q5W0Q7 1092 aa15.34■□□□□ 0.05
SH3RF1-205ENST00000511421 CCDC146Q8IYE0 955 aa15.34■□□□□ 0.05
SH3RF1-205ENST00000511421 NARFQ9UHQ1 456 aa15.34■□□□□ 0.05
SH3RF1-205ENST00000511421 USP16Q9Y5T5 823 aa15.34■□□□□ 0.05
SH3RF1-205ENST00000511421 UTRNP46939 3433 aa15.33■□□□□ 0.05
SH3RF1-205ENST00000511421 ZPR1O75312 459 aa15.33■□□□□ 0.04
SH3RF1-205ENST00000511421 A1BGP04217 495 aa15.33■□□□□ 0.04
SH3RF1-205ENST00000511421 SNRPA1P09661 255 aaKnown RBP15.33■□□□□ 0.04
SH3RF1-205ENST00000511421 TM4SF1P30408 202 aa15.32■□□□□ 0.04
SH3RF1-205ENST00000511421 GPR162Q16538 588 aa15.32■□□□□ 0.04
SH3RF1-205ENST00000511421 PNISRQ8TF01 805 aaKnown RBP15.32■□□□□ 0.04
SH3RF1-205ENST00000511421 RUNDC1Q96C34 613 aa15.32■□□□□ 0.04
SH3RF1-205ENST00000511421 BCL2L12Q9HB09 334 aa15.32■□□□□ 0.04
SH3RF1-205ENST00000511421 IL6STP40189 918 aaPredicted RBP15.32■□□□□ 0.04
SH3RF1-205ENST00000511421 DDR1Q08345 913 aa15.32■□□□□ 0.04
SH3RF1-205ENST00000511421 PARP3Q9Y6F1 533 aa15.32■□□□□ 0.04
SH3RF1-205ENST00000511421 YBX3P16989 372 aaKnown RBP eCLIP15.31■□□□□ 0.04
SH3RF1-205ENST00000511421 RRP7AQ9Y3A4 280 aaKnown RBP15.31■□□□□ 0.04
SH3RF1-205ENST00000511421 A0A087WZG4 1122 aa15.3■□□□□ 0.04
SH3RF1-205ENST00000511421 C10orf71Q711Q0 1435 aa15.3■□□□□ 0.04
SH3RF1-205ENST00000511421 POLRMTO00411 1230 aaKnown RBP15.29■□□□□ 0.04
SH3RF1-205ENST00000511421 EIF4A1P60842 406 aaKnown RBP15.29■□□□□ 0.04
SH3RF1-205ENST00000511421 CCDC184Q52MB2 194 aa15.29■□□□□ 0.04
SH3RF1-205ENST00000511421 PELP1Q8IZL8 1130 aaKnown RBP15.29■□□□□ 0.04
SH3RF1-205ENST00000511421 GOLGB1Q14789 3259 aaKnown RBP15.29■□□□□ 0.04
SH3RF1-205ENST00000511421 YY1P25490 414 aa15.28■□□□□ 0.04
SH3RF1-205ENST00000511421 PIP4K2AP48426 406 aaPredicted RBP15.28■□□□□ 0.04
SH3RF1-205ENST00000511421 LMOD3Q0VAK6 560 aa15.28■□□□□ 0.04
SH3RF1-205ENST00000511421 NFIXQ14938 502 aa15.28■□□□□ 0.04
SH3RF1-205ENST00000511421 TRIM35Q9UPQ4 493 aa15.28■□□□□ 0.04
SH3RF1-205ENST00000511421 NBPF26B4DH59 902 aa15.28■□□□□ 0.04
SH3RF1-205ENST00000511421 GIGYF1O75420 1035 aaPredicted RBP15.28■□□□□ 0.04
SH3RF1-205ENST00000511421 NEUROD2Q15784 382 aa15.28■□□□□ 0.04
SH3RF1-205ENST00000511421 NBPF10Q6P3W6 841 aaKnown RBP15.28■□□□□ 0.04
SH3RF1-205ENST00000511421 NBPF15Q8N660 670 aa15.28■□□□□ 0.04
SH3RF1-205ENST00000511421 TBC1D2BQ9UPU7 963 aa15.28■□□□□ 0.04
SH3RF1-205ENST00000511421 ZNF330Q9Y3S2 320 aaPredicted RBP15.28■□□□□ 0.04
SH3RF1-205ENST00000511421 KDM3BQ7LBC6 1761 aa15.28■□□□□ 0.04
SH3RF1-205ENST00000511421 TGFB2P61812 414 aa15.27■□□□□ 0.03
SH3RF1-205ENST00000511421 KIF13BQ9NQT8 1826 aa15.27■□□□□ 0.03
SH3RF1-205ENST00000511421 PXDNLA1KZ92 1463 aa15.27■□□□□ 0.03
SH3RF1-205ENST00000511421 BABAM1Q9NWV8 329 aa15.26■□□□□ 0.03
SH3RF1-205ENST00000511421 TSPYL4Q9UJ04 414 aa15.26■□□□□ 0.03
SH3RF1-205ENST00000511421 GRIN3BO60391 1043 aa15.25■□□□□ 0.03
SH3RF1-205ENST00000511421 CAMTA2O94983 1202 aa15.25■□□□□ 0.03
SH3RF1-205ENST00000511421 A0A0G2JLW4 131 aa15.25■□□□□ 0.03
SH3RF1-205ENST00000511421 DZIP3Q86Y13 1208 aaKnown RBP15.25■□□□□ 0.03
SH3RF1-205ENST00000511421 KIAA1551Q9HCM1 1747 aa15.24■□□□□ 0.03
SH3RF1-205ENST00000511421 ANP32CO43423 234 aa15.24■□□□□ 0.03
SH3RF1-205ENST00000511421 DPEP1P16444 411 aa15.24■□□□□ 0.03
SH3RF1-205ENST00000511421 TBC1D9BQ66K14 1250 aa15.24■□□□□ 0.03
SH3RF1-205ENST00000511421 NPM2Q86SE8 214 aaKnown RBP15.24■□□□□ 0.03
SH3RF1-205ENST00000511421 WWC3Q9ULE0 1092 aa15.24■□□□□ 0.03
SH3RF1-205ENST00000511421 CHL1O00533 1208 aa15.23■□□□□ 0.03
SH3RF1-205ENST00000511421 APAF1O14727 1248 aa15.23■□□□□ 0.03
SH3RF1-205ENST00000511421 SERPINB2P05120 415 aa15.23■□□□□ 0.03
SH3RF1-205ENST00000511421 KCNA3P22001 575 aa15.23■□□□□ 0.03
SH3RF1-205ENST00000511421 BICDL1Q6ZP65 573 aa15.23■□□□□ 0.03
SH3RF1-205ENST00000511421 SCN7AQ01118 1682 aa15.22■□□□□ 0.03
SH3RF1-205ENST00000511421 CLEC4GQ6UXB4 293 aa15.21■□□□□ 0.03
SH3RF1-205ENST00000511421 NRXN2Q9P2S2 1712 aa15.21■□□□□ 0.03
SH3RF1-205ENST00000511421 LAMB4A4D0S4 1761 aa15.21■□□□□ 0.02
SH3RF1-205ENST00000511421 N4BP2Q86UW6 1770 aaPredicted RBP15.21■□□□□ 0.02
SH3RF1-205ENST00000511421 CHD4Q14839 1912 aa15.21■□□□□ 0.02
SH3RF1-205ENST00000511421 AFDNP55196 1824 aaKnown RBP15.2■□□□□ 0.02
SH3RF1-205ENST00000511421 RGL2O15211 777 aa15.19■□□□□ 0.02
SH3RF1-205ENST00000511421 CHRNA5P30532 468 aa15.19■□□□□ 0.02
SH3RF1-205ENST00000511421 MRS2Q9HD23 443 aa15.19■□□□□ 0.02
SH3RF1-205ENST00000511421 KRT24Q2M2I5 525 aa15.19■□□□□ 0.02
SH3RF1-205ENST00000511421 CFAP44Q96MT7 982 aa15.19■□□□□ 0.02
SH3RF1-205ENST00000511421 SETDB2Q96T68 719 aa15.19■□□□□ 0.02
SH3RF1-205ENST00000511421 BCS1LQ9Y276 419 aa15.19■□□□□ 0.02
SH3RF1-205ENST00000511421 LAS1LQ9Y4W2 734 aaKnown RBP15.19■□□□□ 0.02
SH3RF1-205ENST00000511421 ERBB4Q15303 1308 aa15.18■□□□□ 0.02
SH3RF1-205ENST00000511421 BCORQ6W2J9 1755 aa15.18■□□□□ 0.02
SH3RF1-205ENST00000511421 CARMIL3Q8ND23 1372 aa15.18■□□□□ 0.02
SH3RF1-205ENST00000511421 ZNF853P0CG23 659 aa15.18■□□□□ 0.02
SH3RF1-205ENST00000511421 PDIA6Q15084 440 aa15.18■□□□□ 0.02
SH3RF1-205ENST00000511421 PRR5LQ6MZQ0 368 aa15.18■□□□□ 0.02
SH3RF1-205ENST00000511421 LRP10Q7Z4F1 713 aa15.18■□□□□ 0.02
SH3RF1-205ENST00000511421 PIM2Q9P1W9 311 aa15.18■□□□□ 0.02
SH3RF1-205ENST00000511421 MYL6BP14649 208 aa15.17■□□□□ 0.02
SH3RF1-205ENST00000511421 EIF2S2P20042 333 aaKnown RBP15.17■□□□□ 0.02
SH3RF1-205ENST00000511421 HLFQ16534 295 aa15.17■□□□□ 0.02
SH3RF1-205ENST00000511421 TTLL7Q6ZT98 887 aa15.17■□□□□ 0.02
SH3RF1-205ENST00000511421 NGEFQ8N5V2 710 aa15.17■□□□□ 0.02
SH3RF1-205ENST00000511421 ZNF784Q8NCA9 323 aaPredicted RBP15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms