RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 PNPLA7Q6ZV29 1317 aa22.26■■□□□ 1.15
LIME1-208ENST00000493265 KCPQ6ZWJ8 1503 aa22.26■■□□□ 1.15
LIME1-208ENST00000493265 COL24A1Q17RW2 1714 aa22.26■■□□□ 1.15
LIME1-208ENST00000493265 DUSP27Q5VZP5 1158 aa22.24■■□□□ 1.15
LIME1-208ENST00000493265 C8orf58Q8NAV2 365 aa22.24■■□□□ 1.15
LIME1-208ENST00000493265 TFCP2L1Q9NZI6 479 aa22.24■■□□□ 1.15
LIME1-208ENST00000493265 UBR2Q8IWV8 1755 aa22.24■■□□□ 1.15
LIME1-208ENST00000493265 LOC102724428A0A0B4J2F2 783 aa22.23■■□□□ 1.15
LIME1-208ENST00000493265 PRAMEF22A3QJZ6 481 aa22.23■■□□□ 1.15
LIME1-208ENST00000493265 ATP6V1AP38606 617 aa22.23■■□□□ 1.15
LIME1-208ENST00000493265 SIK1P57059 783 aa22.23■■□□□ 1.15
LIME1-208ENST00000493265 TRMT2AQ8IZ69 625 aaKnown RBP22.23■■□□□ 1.15
LIME1-208ENST00000493265 HEG1Q9ULI3 1381 aa22.23■■□□□ 1.15
LIME1-208ENST00000493265 POLD1P28340 1107 aa22.22■■□□□ 1.15
LIME1-208ENST00000493265 GPR162Q16538 588 aa22.22■■□□□ 1.15
LIME1-208ENST00000493265 TSPYL6Q8N831 410 aa22.22■■□□□ 1.15
LIME1-208ENST00000493265 SLC16A10Q8TF71 515 aa22.22■■□□□ 1.15
LIME1-208ENST00000493265 SLC4A9Q96Q91 983 aa22.22■■□□□ 1.15
LIME1-208ENST00000493265 CCNL1Q9UK58 526 aaPredicted RBP22.22■■□□□ 1.15
LIME1-208ENST00000493265 NECTIN2Q92692 538 aa22.21■■□□□ 1.15
LIME1-208ENST00000493265 SNRPA1P09661 255 aaKnown RBP22.2■■□□□ 1.14
LIME1-208ENST00000493265 DNAJC10Q8IXB1 793 aa22.2■■□□□ 1.14
LIME1-208ENST00000493265 PELP1Q8IZL8 1130 aaKnown RBP22.2■■□□□ 1.14
LIME1-208ENST00000493265 GIGYF1O75420 1035 aaPredicted RBP22.19■■□□□ 1.14
LIME1-208ENST00000493265 EIF2S2P20042 333 aaKnown RBP22.19■■□□□ 1.14
LIME1-208ENST00000493265 TWISTNBQ3B726 338 aaPredicted RBP22.19■■□□□ 1.14
LIME1-208ENST00000493265 C5P01031 1676 aa22.19■■□□□ 1.14
LIME1-208ENST00000493265 ITPK1Q13572 414 aa22.18■■□□□ 1.14
LIME1-208ENST00000493265 VSIG10Q8N0Z9 540 aa22.17■■□□□ 1.14
LIME1-208ENST00000493265 USP16Q9Y5T5 823 aa22.17■■□□□ 1.14
LIME1-208ENST00000493265 TCERG1O14776 1098 aaKnown RBP22.16■■□□□ 1.14
LIME1-208ENST00000493265 MSH5O43196 834 aa22.16■■□□□ 1.14
LIME1-208ENST00000493265 NLGN2Q8NFZ4 835 aa22.16■■□□□ 1.14
LIME1-208ENST00000493265 TJP1Q07157 1748 aa22.16■■□□□ 1.14
LIME1-208ENST00000493265 LINC00116Q8NCU8 138 aa22.15■■□□□ 1.14
LIME1-208ENST00000493265 HDGFL1Q5TGJ6 251 aa22.14■■□□□ 1.13
LIME1-208ENST00000493265 TEX13AQ9BXU3 409 aaPredicted RBP22.14■■□□□ 1.13
LIME1-208ENST00000493265 VAMP4O75379 141 aa22.13■■□□□ 1.13
LIME1-208ENST00000493265 STARD3NLO95772 234 aa22.13■■□□□ 1.13
LIME1-208ENST00000493265 HMGB2P26583 209 aaKnown RBP22.13■■□□□ 1.13
LIME1-208ENST00000493265 PIP4K2AP48426 406 aaPredicted RBP22.13■■□□□ 1.13
LIME1-208ENST00000493265 GOLGB1Q14789 3259 aaKnown RBP22.12■■□□□ 1.13
LIME1-208ENST00000493265 CYP19A1P11511 503 aaPredicted RBP22.12■■□□□ 1.13
LIME1-208ENST00000493265 TAF1LQ8IZX4 1826 aa22.12■■□□□ 1.13
LIME1-208ENST00000493265 LAMB4A4D0S4 1761 aa22.12■■□□□ 1.13
LIME1-208ENST00000493265 A1BGP04217 495 aa22.11■■□□□ 1.13
LIME1-208ENST00000493265 HOXB7P09629 217 aa22.11■■□□□ 1.13
LIME1-208ENST00000493265 MSL1Q68DK7 614 aa22.11■■□□□ 1.13
LIME1-208ENST00000493265 COL23A1Q86Y22 540 aaPredicted RBP22.11■■□□□ 1.13
LIME1-208ENST00000493265 CANXP27824 592 aaKnown RBP22.1■■□□□ 1.13
LIME1-208ENST00000493265 CRKLP46109 303 aaKnown RBP22.1■■□□□ 1.13
LIME1-208ENST00000493265 C1QTNF8P60827 252 aa22.1■■□□□ 1.13
LIME1-208ENST00000493265 ZNF330Q9Y3S2 320 aaPredicted RBP22.1■■□□□ 1.13
LIME1-208ENST00000493265 ZNF831Q5JPB2 1677 aa22.1■■□□□ 1.13
LIME1-208ENST00000493265 ANXA1P04083 346 aa22.09■■□□□ 1.13
LIME1-208ENST00000493265 CCDC30Q5VVM6 783 aa22.09■■□□□ 1.13
LIME1-208ENST00000493265 CCDC87Q9NVE4 849 aa22.09■■□□□ 1.13
LIME1-208ENST00000493265 COL5A3P25940 1745 aaPredicted RBP22.09■■□□□ 1.13
LIME1-208ENST00000493265 SOS1Q07889 1333 aaPredicted RBP22.08■■□□□ 1.13
LIME1-208ENST00000493265 MYL6BP14649 208 aa22.08■■□□□ 1.13
LIME1-208ENST00000493265 BCL2L13Q9BXK5 485 aa22.08■■□□□ 1.13
LIME1-208ENST00000493265 CHPF2Q9P2E5 772 aa22.08■■□□□ 1.13
LIME1-208ENST00000493265 CICQ96RK0 1608 aaPredicted RBP22.07■■□□□ 1.12
LIME1-208ENST00000493265 AK7Q96M32 723 aa22.07■■□□□ 1.12
LIME1-208ENST00000493265 STK31Q9BXU1 1019 aa22.07■■□□□ 1.12
LIME1-208ENST00000493265 ZBTB1Q9Y2K1 713 aa22.07■■□□□ 1.12
LIME1-208ENST00000493265 C4BP0C0L5 1744 aa22.06■■□□□ 1.12
LIME1-208ENST00000493265 GNPATO15228 680 aa22.06■■□□□ 1.12
LIME1-208ENST00000493265 CT47B1P0C2W7 299 aaPredicted RBP22.06■■□□□ 1.12
LIME1-208ENST00000493265 PROSER3Q2NL68 480 aa22.06■■□□□ 1.12
LIME1-208ENST00000493265 INTS5Q6P9B9 1019 aaKnown RBP22.06■■□□□ 1.12
LIME1-208ENST00000493265 SMIM5Q71RC9 77 aa22.06■■□□□ 1.12
LIME1-208ENST00000493265 NBPF26B4DH59 902 aa22.05■■□□□ 1.12
LIME1-208ENST00000493265 YBX3P16989 372 aaKnown RBP eCLIP22.05■■□□□ 1.12
LIME1-208ENST00000493265 NBPF10Q6P3W6 841 aaKnown RBP22.05■■□□□ 1.12
LIME1-208ENST00000493265 NBPF15Q8N660 670 aa22.05■■□□□ 1.12
LIME1-208ENST00000493265 CHMP4AQ9BY43 222 aa22.05■■□□□ 1.12
LIME1-208ENST00000493265 SSH1Q8WYL5 1049 aa22.04■■□□□ 1.12
LIME1-208ENST00000493265 SMC4Q9NTJ3 1288 aa22.04■■□□□ 1.12
LIME1-208ENST00000493265 DBF4Q9UBU7 674 aaPredicted RBP22.04■■□□□ 1.12
LIME1-208ENST00000493265 CNTNAP4Q9C0A0 1308 aa22.04■■□□□ 1.12
LIME1-208ENST00000493265 PHF14O94880 888 aa22.03■■□□□ 1.12
LIME1-208ENST00000493265 SLC4A2P04920 1241 aa22.03■■□□□ 1.12
LIME1-208ENST00000493265 RARSP54136 660 aaKnown RBP22.03■■□□□ 1.12
LIME1-208ENST00000493265 PDIA6Q15084 440 aa22.02■■□□□ 1.12
LIME1-208ENST00000493265 RC3H1Q5TC82 1133 aaKnown RBP22.02■■□□□ 1.12
LIME1-208ENST00000493265 NPM2Q86SE8 214 aaKnown RBP22.02■■□□□ 1.12
LIME1-208ENST00000493265 DDX21Q9NR30 783 aaKnown RBP eCLIP22.02■■□□□ 1.12
LIME1-208ENST00000493265 RCAN3Q9UKA8 241 aa22.02■■□□□ 1.12
LIME1-208ENST00000493265 MYH14Q7Z406 1995 aaKnown RBP22.01■■□□□ 1.11
LIME1-208ENST00000493265 BCAR3O75815 825 aa22.01■■□□□ 1.11
LIME1-208ENST00000493265 AIMP1Q12904 312 aaKnown RBP22.01■■□□□ 1.11
LIME1-208ENST00000493265 ERBB4Q15303 1308 aa22.01■■□□□ 1.11
LIME1-208ENST00000493265 UBR3Q6ZT12 1888 aa22■■□□□ 1.11
LIME1-208ENST00000493265 GRIN3BO60391 1043 aa22■■□□□ 1.11
LIME1-208ENST00000493265 ALDH1L2Q3SY69 923 aa22■■□□□ 1.11
LIME1-208ENST00000493265 MRPL50Q8N5N7 158 aaKnown RBP22■■□□□ 1.11
LIME1-208ENST00000493265 ZNF428Q96B54 188 aa22■■□□□ 1.11
LIME1-208ENST00000493265 PHAXQ9H814 394 aaKnown RBP22■■□□□ 1.11
LIME1-208ENST00000493265 RTCBQ9Y3I0 505 aaKnown RBP22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms