RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 CDK15Q96Q40 435 aa9.88□□□□□ -0.83
PRPF40A-210ENST00000489741 EID1Q9Y6B2 187 aa9.88□□□□□ -0.83
PRPF40A-210ENST00000489741 KANK1Q14678 1352 aa9.88□□□□□ -0.83
PRPF40A-210ENST00000489741 ERFEQ4G0M1 354 aa9.87□□□□□ -0.83
PRPF40A-210ENST00000489741 BANK1Q8NDB2 785 aa9.87□□□□□ -0.83
PRPF40A-210ENST00000489741 TRIM34Q9BYJ4 488 aa9.87□□□□□ -0.83
PRPF40A-210ENST00000489741 DACH1Q9UI36 760 aa9.87□□□□□ -0.83
PRPF40A-210ENST00000489741 NOS1P29475 1434 aa9.87□□□□□ -0.83
PRPF40A-210ENST00000489741 IQGAP1P46940 1657 aa9.87□□□□□ -0.83
PRPF40A-210ENST00000489741 ADGRL2O95490 1459 aa9.86□□□□□ -0.83
PRPF40A-210ENST00000489741 VASH1Q7L8A9 365 aaPredicted RBP9.86□□□□□ -0.83
PRPF40A-210ENST00000489741 UBR1Q8IWV7 1749 aa9.86□□□□□ -0.83
PRPF40A-210ENST00000489741 TRMT44Q8IYL2 757 aaKnown RBP9.86□□□□□ -0.83
PRPF40A-210ENST00000489741 SLC10A4Q96EP9 437 aa9.86□□□□□ -0.83
PRPF40A-210ENST00000489741 SLC52A1Q9NWF4 448 aa9.86□□□□□ -0.83
PRPF40A-210ENST00000489741 GPSM3Q9Y4H4 160 aa9.86□□□□□ -0.83
PRPF40A-210ENST00000489741 CAPN5O15484 640 aaPredicted RBP9.85□□□□□ -0.83
PRPF40A-210ENST00000489741 KCNA6P17658 529 aa9.85□□□□□ -0.83
PRPF40A-210ENST00000489741 FSHRP23945 695 aa9.85□□□□□ -0.83
PRPF40A-210ENST00000489741 STRCP1A6NGW2 1772 aa9.85□□□□□ -0.83
PRPF40A-210ENST00000489741 CEP152O94986 1710 aa9.85□□□□□ -0.83
PRPF40A-210ENST00000489741 NR5A1Q13285 461 aa9.84□□□□□ -0.83
PRPF40A-210ENST00000489741 ATP13A2Q9NQ11 1180 aa9.84□□□□□ -0.83
PRPF40A-210ENST00000489741 MAP4K5Q9Y4K4 846 aa9.84□□□□□ -0.83
PRPF40A-210ENST00000489741 POTECB2RU33 542 aa9.83□□□□□ -0.84
PRPF40A-210ENST00000489741 APBB1O00213 710 aa9.83□□□□□ -0.84
PRPF40A-210ENST00000489741 WDR4P57081 412 aaKnown RBP9.83□□□□□ -0.84
PRPF40A-210ENST00000489741 ADAM32Q8TC27 787 aa9.83□□□□□ -0.84
PRPF40A-210ENST00000489741 GJD4Q96KN9 370 aaPredicted RBP9.83□□□□□ -0.84
PRPF40A-210ENST00000489741 CROCC2H7BZ55 1655 aa9.83□□□□□ -0.84
PRPF40A-210ENST00000489741 TET3O43151 1660 aa9.83□□□□□ -0.84
PRPF40A-210ENST00000489741 FAM135BQ49AJ0 1406 aa9.82□□□□□ -0.84
PRPF40A-210ENST00000489741 ANKRD50Q9ULJ7 1429 aa9.82□□□□□ -0.84
PRPF40A-210ENST00000489741 GRM5P41594 1212 aa9.82□□□□□ -0.84
PRPF40A-210ENST00000489741 FAM50AQ14320 339 aaKnown RBP9.82□□□□□ -0.84
PRPF40A-210ENST00000489741 MTMR14Q8NCE2 650 aa9.82□□□□□ -0.84
PRPF40A-210ENST00000489741 SLC26A8Q96RN1 970 aa9.82□□□□□ -0.84
PRPF40A-210ENST00000489741 SNRKQ9NRH2 765 aa9.82□□□□□ -0.84
PRPF40A-210ENST00000489741 GMPR2Q9P2T1 348 aaKnown RBP9.82□□□□□ -0.84
PRPF40A-210ENST00000489741 SYNMO15061 1565 aa9.81□□□□□ -0.84
PRPF40A-210ENST00000489741 MED1Q15648 1581 aaPredicted RBP9.81□□□□□ -0.84
PRPF40A-210ENST00000489741 TMEM94Q12767 1356 aa9.81□□□□□ -0.84
PRPF40A-210ENST00000489741 NR3C2P08235 984 aa9.81□□□□□ -0.84
PRPF40A-210ENST00000489741 OCSTAMPQ9BR26 566 aa9.81□□□□□ -0.84
PRPF40A-210ENST00000489741 CDV3Q9UKY7 258 aaKnown RBP9.81□□□□□ -0.84
PRPF40A-210ENST00000489741 CFAP65Q6ZU64 1925 aaKnown RBP9.81□□□□□ -0.84
PRPF40A-210ENST00000489741 PIK3C2BO00750 1634 aa9.81□□□□□ -0.84
PRPF40A-210ENST00000489741 EFCAB6Q5THR3 1501 aa9.81□□□□□ -0.84
PRPF40A-210ENST00000489741 RPRD2Q5VT52 1461 aaKnown RBP9.8□□□□□ -0.84
PRPF40A-210ENST00000489741 BMP1P13497 986 aa9.8□□□□□ -0.84
PRPF40A-210ENST00000489741 TIMP2P16035 220 aa9.8□□□□□ -0.84
PRPF40A-210ENST00000489741 PROSER2Q86WR7 435 aaPredicted RBP9.8□□□□□ -0.84
PRPF40A-210ENST00000489741 RGS17Q9UGC6 210 aaPredicted RBP9.8□□□□□ -0.84
PRPF40A-210ENST00000489741 NDUFB9Q9Y6M9 179 aa9.8□□□□□ -0.84
PRPF40A-210ENST00000489741 KDM5AP29375 1690 aaKnown RBP9.8□□□□□ -0.84
PRPF40A-210ENST00000489741 ROCK1Q13464 1354 aa9.79□□□□□ -0.84
PRPF40A-210ENST00000489741 C11orf95C9JLR9 678 aaPredicted RBP9.79□□□□□ -0.84
PRPF40A-210ENST00000489741 ZIC2O95409 532 aaPredicted RBP9.79□□□□□ -0.84
PRPF40A-210ENST00000489741 SENP2Q9HC62 589 aa9.79□□□□□ -0.84
PRPF40A-210ENST00000489741 TBX22Q9Y458 520 aa9.79□□□□□ -0.84
PRPF40A-210ENST00000489741 ZFYVE9O95405 1425 aa9.79□□□□□ -0.84
PRPF40A-210ENST00000489741 DZIP3Q86Y13 1208 aaKnown RBP9.78□□□□□ -0.84
PRPF40A-210ENST00000489741 KCTD15Q96SI1 283 aaPredicted RBP9.78□□□□□ -0.84
PRPF40A-210ENST00000489741 PLEKHG1Q9ULL1 1385 aa9.77□□□□□ -0.84
PRPF40A-210ENST00000489741 ZBBXA8MT70 800 aa9.77□□□□□ -0.85
PRPF40A-210ENST00000489741 NBPF20Q3BBV1 942 aa9.77□□□□□ -0.85
PRPF40A-210ENST00000489741 CCDC116Q8IYX3 515 aa9.77□□□□□ -0.85
PRPF40A-210ENST00000489741 ITPKCQ96DU7 683 aa9.77□□□□□ -0.85
PRPF40A-210ENST00000489741 ZFAND3Q9H8U3 227 aa9.77□□□□□ -0.85
PRPF40A-210ENST00000489741 ADGRB3O60242 1522 aa9.77□□□□□ -0.85
PRPF40A-210ENST00000489741 KLF16Q9BXK1 252 aaPredicted RBP9.76□□□□□ -0.85
PRPF40A-210ENST00000489741 RIMS2Q9UQ26 1411 aa9.75□□□□□ -0.85
PRPF40A-210ENST00000489741 FBXO45P0C2W1 286 aa9.75□□□□□ -0.85
PRPF40A-210ENST00000489741 TRIM46Q7Z4K8 759 aa9.75□□□□□ -0.85
PRPF40A-210ENST00000489741 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.75□□□□□ -0.85
PRPF40A-210ENST00000489741 TRIM47Q96LD4 638 aa9.75□□□□□ -0.85
PRPF40A-210ENST00000489741 PRM3Q9NNZ6 103 aa9.75□□□□□ -0.85
PRPF40A-210ENST00000489741 SLAIN2Q9P270 581 aa9.75□□□□□ -0.85
PRPF40A-210ENST00000489741 PCDHB9Q9Y5E1 797 aa9.75□□□□□ -0.85
PRPF40A-210ENST00000489741 EMILIN1Q9Y6C2 1016 aa9.75□□□□□ -0.85
PRPF40A-210ENST00000489741 NCOA3Q9Y6Q9 1424 aa9.74□□□□□ -0.85
PRPF40A-210ENST00000489741 NKTRP30414 1462 aaKnown RBP9.74□□□□□ -0.85
PRPF40A-210ENST00000489741 RAB15P59190 212 aa9.74□□□□□ -0.85
PRPF40A-210ENST00000489741 KIFC2Q96AC6 838 aa9.74□□□□□ -0.85
PRPF40A-210ENST00000489741 PGPEP1Q9NXJ5 209 aa9.74□□□□□ -0.85
PRPF40A-210ENST00000489741 XIRP1Q702N8 1843 aaKnown RBP9.74□□□□□ -0.85
PRPF40A-210ENST00000489741 ADAMTS13Q76LX8 1427 aa9.73□□□□□ -0.85
PRPF40A-210ENST00000489741 NWD1Q149M9 1564 aa9.73□□□□□ -0.85
PRPF40A-210ENST00000489741 DHX9Q08211 1270 aaKnown RBP9.73□□□□□ -0.85
PRPF40A-210ENST00000489741 SCARF1Q14162 830 aa9.73□□□□□ -0.85
PRPF40A-210ENST00000489741 INTS6LQ5JSJ4 861 aaKnown RBP9.73□□□□□ -0.85
PRPF40A-210ENST00000489741 PPP1R26Q5T8A7 1209 aaPredicted RBP9.73□□□□□ -0.85
PRPF40A-210ENST00000489741 MRPL14Q6P1L8 145 aaKnown RBP9.73□□□□□ -0.85
PRPF40A-210ENST00000489741 TMEM131LA2VDJ0 1609 aa9.72□□□□□ -0.85
PRPF40A-210ENST00000489741 PPP1R15AO75807 674 aaPredicted RBP9.72□□□□□ -0.85
PRPF40A-210ENST00000489741 SNRPBP14678 240 aaKnown RBP9.72□□□□□ -0.85
PRPF40A-210ENST00000489741 NR1H3Q13133 447 aa9.72□□□□□ -0.85
PRPF40A-210ENST00000489741 NUP155O75694 1391 aa9.72□□□□□ -0.85
PRPF40A-210ENST00000489741 MSH6P52701 1360 aa9.72□□□□□ -0.85
PRPF40A-210ENST00000489741 PIK3R4Q99570 1358 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms