RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 CYP19A1P11511 503 aaPredicted RBP19.38■□□□□ 0.69
USP4-212ENST00000486549 COL24A1Q17RW2 1714 aa19.38■□□□□ 0.69
USP4-212ENST00000486549 TRAPPC3LQ5T215 181 aa19.38■□□□□ 0.69
USP4-212ENST00000486549 SENP3-EIF4A1A0A087X0R7 540 aa19.37■□□□□ 0.69
USP4-212ENST00000486549 INTS5Q6P9B9 1019 aaKnown RBP19.37■□□□□ 0.69
USP4-212ENST00000486549 TRIM35Q9UPQ4 493 aa19.37■□□□□ 0.69
USP4-212ENST00000486549 ZBTB1Q9Y2K1 713 aa19.36■□□□□ 0.69
USP4-212ENST00000486549 PRAMEF22A3QJZ6 481 aa19.35■□□□□ 0.69
USP4-212ENST00000486549 STARD3NLO95772 234 aa19.35■□□□□ 0.69
USP4-212ENST00000486549 YY1P25490 414 aa19.35■□□□□ 0.69
USP4-212ENST00000486549 ARHGEF1Q92888 912 aaKnown RBP19.35■□□□□ 0.69
USP4-212ENST00000486549 TEX13AQ9BXU3 409 aaPredicted RBP19.35■□□□□ 0.69
USP4-212ENST00000486549 TSPYL4Q9UJ04 414 aa19.35■□□□□ 0.69
USP4-212ENST00000486549 LAMB4A4D0S4 1761 aa19.34■□□□□ 0.69
USP4-212ENST00000486549 ADRA2BP18089 450 aa19.34■□□□□ 0.69
USP4-212ENST00000486549 CANXP27824 592 aaKnown RBP19.34■□□□□ 0.69
USP4-212ENST00000486549 RFC4P35249 363 aa19.34■□□□□ 0.69
USP4-212ENST00000486549 FAM9BQ8IZU0 186 aa19.34■□□□□ 0.69
USP4-212ENST00000486549 SNRPA1P09661 255 aaKnown RBP19.33■□□□□ 0.68
USP4-212ENST00000486549 KLHL34Q8N239 644 aa19.33■□□□□ 0.68
USP4-212ENST00000486549 LAS1LQ9Y4W2 734 aaKnown RBP19.33■□□□□ 0.68
USP4-212ENST00000486549 SOS1Q07889 1333 aaPredicted RBP19.32■□□□□ 0.68
USP4-212ENST00000486549 ZNF330Q9Y3S2 320 aaPredicted RBP19.32■□□□□ 0.68
USP4-212ENST00000486549 COL15A1P39059 1388 aa19.32■□□□□ 0.68
USP4-212ENST00000486549 EIF4A1P60842 406 aaKnown RBP19.31■□□□□ 0.68
USP4-212ENST00000486549 SRP68Q9UHB9 627 aaKnown RBP19.31■□□□□ 0.68
USP4-212ENST00000486549 USP16Q9Y5T5 823 aa19.31■□□□□ 0.68
USP4-212ENST00000486549 A1BGP04217 495 aa19.3■□□□□ 0.68
USP4-212ENST00000486549 PIP4K2AP48426 406 aaPredicted RBP19.3■□□□□ 0.68
USP4-212ENST00000486549 GPR162Q16538 588 aa19.29■□□□□ 0.68
USP4-212ENST00000486549 CD2APQ9Y5K6 639 aa19.29■□□□□ 0.68
USP4-212ENST00000486549 USP42Q9H9J4 1324 aaKnown RBP19.28■□□□□ 0.68
USP4-212ENST00000486549 DIEXFQ68CQ4 756 aaKnown RBP19.28■□□□□ 0.68
USP4-212ENST00000486549 ZPR1O75312 459 aa19.27■□□□□ 0.68
USP4-212ENST00000486549 GIGYF1O75420 1035 aaPredicted RBP19.27■□□□□ 0.68
USP4-212ENST00000486549 GYS1P13807 737 aa19.27■□□□□ 0.68
USP4-212ENST00000486549 BABAM1Q9NWV8 329 aa19.27■□□□□ 0.68
USP4-212ENST00000486549 CHL1O00533 1208 aa19.26■□□□□ 0.67
USP4-212ENST00000486549 EIF5P55010 431 aaKnown RBP19.26■□□□□ 0.67
USP4-212ENST00000486549 USPL1Q5W0Q7 1092 aa19.26■□□□□ 0.67
USP4-212ENST00000486549 NPM2Q86SE8 214 aaKnown RBP19.26■□□□□ 0.67
USP4-212ENST00000486549 SALL2Q9Y467 1007 aaPredicted RBP19.26■□□□□ 0.67
USP4-212ENST00000486549 MMP10P09238 476 aa19.25■□□□□ 0.67
USP4-212ENST00000486549 IL6STP40189 918 aaPredicted RBP19.25■□□□□ 0.67
USP4-212ENST00000486549 CALD1Q05682 793 aaKnown RBP19.25■□□□□ 0.67
USP4-212ENST00000486549 NLGN1Q8N2Q7 840 aa19.25■□□□□ 0.67
USP4-212ENST00000486549 SCN7AQ01118 1682 aa19.24■□□□□ 0.67
USP4-212ENST00000486549 A0A087WZG4 1122 aa19.24■□□□□ 0.67
USP4-212ENST00000486549 GRIN3BO60391 1043 aa19.24■□□□□ 0.67
USP4-212ENST00000486549 FKBP8Q14318 412 aa19.24■□□□□ 0.67
USP4-212ENST00000486549 CFAP44Q96MT7 982 aa19.24■□□□□ 0.67
USP4-212ENST00000486549 NARFQ9UHQ1 456 aa19.24■□□□□ 0.67
USP4-212ENST00000486549 KRT24Q2M2I5 525 aa19.23■□□□□ 0.67
USP4-212ENST00000486549 MBIPQ9NS73 344 aa19.23■□□□□ 0.67
USP4-212ENST00000486549 TBC1D2BQ9UPU7 963 aa19.23■□□□□ 0.67
USP4-212ENST00000486549 BCORQ6W2J9 1755 aa19.22■□□□□ 0.67
USP4-212ENST00000486549 NBPF26B4DH59 902 aa19.22■□□□□ 0.67
USP4-212ENST00000486549 CCER2I3L3R5 266 aa19.22■□□□□ 0.67
USP4-212ENST00000486549 EIF2S2P20042 333 aaKnown RBP19.22■□□□□ 0.67
USP4-212ENST00000486549 GNAI1P63096 354 aa19.22■□□□□ 0.67
USP4-212ENST00000486549 NBPF10Q6P3W6 841 aaKnown RBP19.22■□□□□ 0.67
USP4-212ENST00000486549 NBPF15Q8N660 670 aa19.22■□□□□ 0.67
USP4-212ENST00000486549 IFT57Q9NWB7 429 aa19.22■□□□□ 0.67
USP4-212ENST00000486549 CCDC27Q2M243 656 aa19.21■□□□□ 0.67
USP4-212ENST00000486549 WWC1Q8IX03 1113 aa19.21■□□□□ 0.67
USP4-212ENST00000486549 PELP1Q8IZL8 1130 aaKnown RBP19.21■□□□□ 0.67
USP4-212ENST00000486549 ZNF853P0CG23 659 aa19.2■□□□□ 0.66
USP4-212ENST00000486549 DZIP3Q86Y13 1208 aaKnown RBP19.2■□□□□ 0.66
USP4-212ENST00000486549 NGEFQ8N5V2 710 aa19.2■□□□□ 0.66
USP4-212ENST00000486549 NLGN2Q8NFZ4 835 aa19.2■□□□□ 0.66
USP4-212ENST00000486549 NECTIN2Q92692 538 aa19.2■□□□□ 0.66
USP4-212ENST00000486549 PARP3Q9Y6F1 533 aa19.2■□□□□ 0.66
USP4-212ENST00000486549 MYL6BP14649 208 aa19.19■□□□□ 0.66
USP4-212ENST00000486549 MIER1Q8N108 512 aa19.19■□□□□ 0.66
USP4-212ENST00000486549 BCL2L12Q9HB09 334 aa19.19■□□□□ 0.66
USP4-212ENST00000486549 DDR1Q08345 913 aa19.18■□□□□ 0.66
USP4-212ENST00000486549 BICDL1Q6ZP65 573 aa19.18■□□□□ 0.66
USP4-212ENST00000486549 TSR2Q969E8 191 aaKnown RBP19.17■□□□□ 0.66
USP4-212ENST00000486549 AFDNP55196 1824 aaKnown RBP19.16■□□□□ 0.66
USP4-212ENST00000486549 CAMTA2O94983 1202 aa19.16■□□□□ 0.66
USP4-212ENST00000486549 NFIXQ14938 502 aa19.16■□□□□ 0.66
USP4-212ENST00000486549 NCBP3Q53F19 620 aaKnown RBP19.16■□□□□ 0.66
USP4-212ENST00000486549 POLRMTO00411 1230 aaKnown RBP19.15■□□□□ 0.66
USP4-212ENST00000486549 ANXA1P04083 346 aa19.15■□□□□ 0.66
USP4-212ENST00000486549 TM4SF1P30408 202 aa19.15■□□□□ 0.66
USP4-212ENST00000486549 DUSP27Q5VZP5 1158 aa19.15■□□□□ 0.66
USP4-212ENST00000486549 ERBB4Q15303 1308 aa19.15■□□□□ 0.66
USP4-212ENST00000486549 KIF13BQ9NQT8 1826 aa19.14■□□□□ 0.65
USP4-212ENST00000486549 CHD4Q14839 1912 aa19.14■□□□□ 0.65
USP4-212ENST00000486549 ELL2O00472 640 aaPredicted RBP19.14■□□□□ 0.65
USP4-212ENST00000486549 PROSER3Q2NL68 480 aa19.14■□□□□ 0.65
USP4-212ENST00000486549 HDGFL1Q5TGJ6 251 aa19.14■□□□□ 0.65
USP4-212ENST00000486549 TBC1D9BQ66K14 1250 aa19.14■□□□□ 0.65
USP4-212ENST00000486549 C10orf71Q711Q0 1435 aa19.14■□□□□ 0.65
USP4-212ENST00000486549 TGFB2P61812 414 aa19.13■□□□□ 0.65
USP4-212ENST00000486549 KIF6Q6ZMV9 814 aa19.13■□□□□ 0.65
USP4-212ENST00000486549 IL16Q14005 1332 aa19.13■□□□□ 0.65
USP4-212ENST00000486549 N4BP2Q86UW6 1770 aaPredicted RBP19.12■□□□□ 0.65
USP4-212ENST00000486549 HOXB7P09629 217 aa19.12■□□□□ 0.65
USP4-212ENST00000486549 PDIA6Q15084 440 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms