RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 MMP10P09238 476 aa22.43■■□□□ 1.18
VIM-205ENST00000485947 MYH14Q7Z406 1995 aaKnown RBP22.42■■□□□ 1.18
VIM-205ENST00000485947 VIRMAQ69YN4 1812 aaKnown RBP22.41■■□□□ 1.18
VIM-205ENST00000485947 SOS1Q07889 1333 aaPredicted RBP22.41■■□□□ 1.18
VIM-205ENST00000485947 USP42Q9H9J4 1324 aaKnown RBP22.41■■□□□ 1.18
VIM-205ENST00000485947 WDR43Q15061 677 aaKnown RBP eCLIP22.41■■□□□ 1.18
VIM-205ENST00000485947 FMNL2Q96PY5 1086 aa22.41■■□□□ 1.18
VIM-205ENST00000485947 HEG1Q9ULI3 1381 aa22.4■■□□□ 1.18
VIM-205ENST00000485947 BTBD11A6QL63 1104 aa22.4■■□□□ 1.18
VIM-205ENST00000485947 ZNF496Q96IT1 587 aaPredicted RBP22.4■■□□□ 1.18
VIM-205ENST00000485947 UBR2Q8IWV8 1755 aa22.4■■□□□ 1.18
VIM-205ENST00000485947 ZPR1O75312 459 aa22.39■■□□□ 1.17
VIM-205ENST00000485947 TGFB2P61812 414 aa22.39■■□□□ 1.17
VIM-205ENST00000485947 YTHDC1Q96MU7 727 aaKnown RBP22.39■■□□□ 1.17
VIM-205ENST00000485947 PARP3Q9Y6F1 533 aa22.39■■□□□ 1.17
VIM-205ENST00000485947 A0A087WZG4 1122 aa22.37■■□□□ 1.17
VIM-205ENST00000485947 PLEKHF1Q96S99 279 aa22.37■■□□□ 1.17
VIM-205ENST00000485947 NARFQ9UHQ1 456 aa22.37■■□□□ 1.17
VIM-205ENST00000485947 SIPA1L3O60292 1781 aaPredicted RBP22.37■■□□□ 1.17
VIM-205ENST00000485947 PELP1Q8IZL8 1130 aaKnown RBP22.35■■□□□ 1.17
VIM-205ENST00000485947 ZBTB1Q9Y2K1 713 aa22.35■■□□□ 1.17
VIM-205ENST00000485947 COL15A1P39059 1388 aa22.35■■□□□ 1.17
VIM-205ENST00000485947 EIF5P55010 431 aaKnown RBP22.34■■□□□ 1.17
VIM-205ENST00000485947 TAF7Q15545 349 aaPredicted RBP22.34■■□□□ 1.17
VIM-205ENST00000485947 C4AP0C0L4 1744 aa22.34■■□□□ 1.17
VIM-205ENST00000485947 MAPK8IP3Q9UPT6 1336 aa22.33■■□□□ 1.17
VIM-205ENST00000485947 C10orf71Q711Q0 1435 aa22.33■■□□□ 1.17
VIM-205ENST00000485947 YBX3P16989 372 aaKnown RBP eCLIP22.33■■□□□ 1.177e-14■■□□□ 11.7
VIM-205ENST00000485947 TM4SF1P30408 202 aa22.33■■□□□ 1.17
VIM-205ENST00000485947 IL6STP40189 918 aaPredicted RBP22.33■■□□□ 1.17
VIM-205ENST00000485947 FKBP8Q14318 412 aa22.33■■□□□ 1.17
VIM-205ENST00000485947 NFE2L2Q16236 605 aa22.33■■□□□ 1.17
VIM-205ENST00000485947 MCM10Q7L590 875 aa22.33■■□□□ 1.17
VIM-205ENST00000485947 SRP68Q9UHB9 627 aaKnown RBP22.33■■□□□ 1.17
VIM-205ENST00000485947 SNRPA1P09661 255 aaKnown RBP22.32■■□□□ 1.16
VIM-205ENST00000485947 ADAMTS8Q9UP79 889 aa22.32■■□□□ 1.16
VIM-205ENST00000485947 USPL1Q5W0Q7 1092 aa22.31■■□□□ 1.16
VIM-205ENST00000485947 NPM2Q86SE8 214 aaKnown RBP22.31■■□□□ 1.16
VIM-205ENST00000485947 KIF13BQ9NQT8 1826 aa22.31■■□□□ 1.16
VIM-205ENST00000485947 ATP10DQ9P241 1426 aa22.31■■□□□ 1.16
VIM-205ENST00000485947 HSPA6P17066 643 aa22.3■■□□□ 1.16
VIM-205ENST00000485947 CANXP27824 592 aaKnown RBP22.3■■□□□ 1.16
VIM-205ENST00000485947 HNRNPUQ00839 825 aaKnown RBP eCLIP22.29■■□□□ 1.16
VIM-205ENST00000485947 POLRMTO00411 1230 aaKnown RBP22.28■■□□□ 1.16
VIM-205ENST00000485947 PXDNLA1KZ92 1463 aa22.28■■□□□ 1.16
VIM-205ENST00000485947 RGL2O15211 777 aa22.27■■□□□ 1.16
VIM-205ENST00000485947 KCNQ3O43525 872 aa22.27■■□□□ 1.16
VIM-205ENST00000485947 DDR1Q08345 913 aa22.27■■□□□ 1.16
VIM-205ENST00000485947 LMOD3Q0VAK6 560 aa22.27■■□□□ 1.16
VIM-205ENST00000485947 DCTN1Q14203 1278 aa22.27■■□□□ 1.16
VIM-205ENST00000485947 BABAM1Q9NWV8 329 aa22.26■■□□□ 1.15
VIM-205ENST00000485947 NFIXQ14938 502 aa22.25■■□□□ 1.15
VIM-205ENST00000485947 BCL2L12Q9HB09 334 aa22.25■■□□□ 1.15
VIM-205ENST00000485947 CENPBP07199 599 aaPredicted RBP22.24■■□□□ 1.15
VIM-205ENST00000485947 USP16Q9Y5T5 823 aa22.24■■□□□ 1.15
VIM-205ENST00000485947 ZBED9Q6R2W3 1325 aa22.24■■□□□ 1.15
VIM-205ENST00000485947 ADCY9O60503 1353 aa22.24■■□□□ 1.15
VIM-205ENST00000485947 A1BGP04217 495 aa22.23■■□□□ 1.15
VIM-205ENST00000485947 GPBP1L1Q9HC44 474 aaPredicted RBP22.23■■□□□ 1.15
VIM-205ENST00000485947 A0A0G2JLW4 131 aa22.22■■□□□ 1.15
VIM-205ENST00000485947 DPEP1P16444 411 aa22.22■■□□□ 1.15
VIM-205ENST00000485947 PIM2Q9P1W9 311 aa22.22■■□□□ 1.15
VIM-205ENST00000485947 PDZRN3Q9UPQ7 1066 aa22.22■■□□□ 1.15
VIM-205ENST00000485947 RIPK4P57078 832 aa22.21■■□□□ 1.15
VIM-205ENST00000485947 CLEC4GQ6UXB4 293 aa22.21■■□□□ 1.15
VIM-205ENST00000485947 RUNDC1Q96C34 613 aa22.21■■□□□ 1.15
VIM-205ENST00000485947 SERPINB2P05120 415 aa22.2■■□□□ 1.14
VIM-205ENST00000485947 TMPOP42166 694 aaKnown RBP22.2■■□□□ 1.14
VIM-205ENST00000485947 NGEFQ8N5V2 710 aa22.2■■□□□ 1.14
VIM-205ENST00000485947 KCNA3P22001 575 aa22.19■■□□□ 1.14
VIM-205ENST00000485947 TBC1D2BQ9UPU7 963 aa22.19■■□□□ 1.14
VIM-205ENST00000485947 DLG5Q8TDM6 1919 aa22.18■■□□□ 1.14
VIM-205ENST00000485947 KIAA1551Q9HCM1 1747 aa22.18■■□□□ 1.14
VIM-205ENST00000485947 CAMTA2O94983 1202 aa22.18■■□□□ 1.14
VIM-205ENST00000485947 EIF4A1P60842 406 aaKnown RBP22.18■■□□□ 1.14
VIM-205ENST00000485947 DZIP3Q86Y13 1208 aaKnown RBP22.18■■□□□ 1.14
VIM-205ENST00000485947 BCS1LQ9Y276 419 aa22.18■■□□□ 1.14
VIM-205ENST00000485947 ZNF652Q9Y2D9 606 aa22.18■■□□□ 1.14
VIM-205ENST00000485947 ZNF330Q9Y3S2 320 aaPredicted RBP22.18■■□□□ 1.14
VIM-205ENST00000485947 CARMIL3Q8ND23 1372 aa22.17■■□□□ 1.14
VIM-205ENST00000485947 NRXN2Q9P2S2 1712 aa22.17■■□□□ 1.14
VIM-205ENST00000485947 ERBB4Q15303 1308 aa22.16■■□□□ 1.14
VIM-205ENST00000485947 NCBP3Q53F19 620 aaKnown RBP22.16■■□□□ 1.14
VIM-205ENST00000485947 DALRD3Q5D0E6 543 aaKnown RBP22.16■■□□□ 1.14
VIM-205ENST00000485947 CCDC146Q8IYE0 955 aa22.16■■□□□ 1.14
VIM-205ENST00000485947 SETDB2Q96T68 719 aa22.16■■□□□ 1.14
VIM-205ENST00000485947 MIS18AQ9NYP9 233 aa22.16■■□□□ 1.14
VIM-205ENST00000485947 PRAMEF22A3QJZ6 481 aa22.15■■□□□ 1.14
VIM-205ENST00000485947 TBC1D9BQ66K14 1250 aa22.15■■□□□ 1.14
VIM-205ENST00000485947 SCN7AQ01118 1682 aa22.14■■□□□ 1.14
VIM-205ENST00000485947 THUMPD2Q9BTF0 503 aaKnown RBP22.14■■□□□ 1.13
VIM-205ENST00000485947 BRIP1Q9BX63 1249 aa22.14■■□□□ 1.13
VIM-205ENST00000485947 TSPYL4Q9UJ04 414 aa22.14■■□□□ 1.13
VIM-205ENST00000485947 KDM3BQ7LBC6 1761 aa22.14■■□□□ 1.13
VIM-205ENST00000485947 NBPF26B4DH59 902 aa22.13■■□□□ 1.13
VIM-205ENST00000485947 NBPF10Q6P3W6 841 aaKnown RBP22.13■■□□□ 1.13
VIM-205ENST00000485947 NBPF15Q8N660 670 aa22.13■■□□□ 1.13
VIM-205ENST00000485947 N4BP2Q86UW6 1770 aaPredicted RBP22.12■■□□□ 1.13
VIM-205ENST00000485947 H0YIN7 160 aa22.12■■□□□ 1.13
VIM-205ENST00000485947 APAF1O14727 1248 aa22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms